Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11630 and EX31_RS11635 are separated by 230 nucleotides EX31_RS11635 and EX31_RS11640 are separated by 168 nucleotides
EX31_RS11630: EX31_RS11630 - L-asparagine permease, at 265,852 to 267,333
_RS11630
EX31_RS11635: EX31_RS11635 - transcriptional antiterminator BglG, at 267,564 to 268,412
_RS11635
EX31_RS11640: EX31_RS11640 - 6-phospho-beta-glucosidase, at 268,581 to 269,978
_RS11640
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 266.788 kb on - strand, within EX31_RS11630 at 266.939 kb on + strand, within EX31_RS11630 at 266.940 kb on - strand, within EX31_RS11630 at 266.940 kb on - strand, within EX31_RS11630 at 266.940 kb on - strand, within EX31_RS11630 at 266.940 kb on - strand, within EX31_RS11630 at 266.940 kb on - strand, within EX31_RS11630 at 266.940 kb on - strand, within EX31_RS11630 at 266.940 kb on - strand, within EX31_RS11630 at 266.959 kb on - strand, within EX31_RS11630 at 267.008 kb on - strand, within EX31_RS11630 at 267.011 kb on + strand, within EX31_RS11630 at 267.011 kb on + strand, within EX31_RS11630 at 267.012 kb on - strand, within EX31_RS11630 at 267.012 kb on - strand, within EX31_RS11630 at 267.045 kb on - strand, within EX31_RS11630 at 267.045 kb on - strand, within EX31_RS11630 at 267.045 kb on - strand, within EX31_RS11630 at 267.076 kb on + strand, within EX31_RS11630 at 267.076 kb on + strand, within EX31_RS11630 at 267.076 kb on + strand, within EX31_RS11630 at 267.121 kb on - strand, within EX31_RS11630 at 267.121 kb on - strand, within EX31_RS11630 at 267.135 kb on - strand, within EX31_RS11630 at 267.135 kb on - strand, within EX31_RS11630 at 267.135 kb on - strand, within EX31_RS11630 at 267.258 kb on - strand at 267.353 kb on + strand at 267.354 kb on - strand at 267.457 kb on + strand at 267.512 kb on - strand at 267.530 kb on + strand at 267.611 kb on + strand at 267.612 kb on - strand at 267.622 kb on + strand at 267.623 kb on - strand at 267.623 kb on - strand at 267.623 kb on - strand at 267.623 kb on - strand at 267.626 kb on + strand at 267.626 kb on + strand at 267.626 kb on + strand at 267.626 kb on + strand at 267.626 kb on + strand at 267.627 kb on - strand at 267.627 kb on - strand at 267.627 kb on - strand at 267.627 kb on - strand at 267.627 kb on - strand at 267.627 kb on - strand at 267.656 kb on - strand, within EX31_RS11635 at 267.671 kb on - strand, within EX31_RS11635 at 267.854 kb on - strand, within EX31_RS11635 at 267.854 kb on - strand, within EX31_RS11635 at 268.135 kb on + strand, within EX31_RS11635 at 268.136 kb on - strand, within EX31_RS11635 at 268.136 kb on - strand, within EX31_RS11635 at 268.218 kb on - strand, within EX31_RS11635 at 268.385 kb on + strand at 268.526 kb on - strand at 268.557 kb on + strand at 268.558 kb on - strand at 268.611 kb on - strand at 268.611 kb on - strand at 268.687 kb on - strand at 268.687 kb on - strand at 268.690 kb on + strand at 268.690 kb on + strand at 268.690 kb on + strand at 268.690 kb on + strand at 268.690 kb on + strand at 268.690 kb on + strand at 268.690 kb on + strand at 268.690 kb on + strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.691 kb on - strand at 268.694 kb on + strand at 268.694 kb on + strand at 268.694 kb on + strand at 268.694 kb on + strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.695 kb on - strand at 268.696 kb on + strand at 268.696 kb on + strand at 268.696 kb on + strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.697 kb on - strand at 268.825 kb on + strand, within EX31_RS11640 at 268.825 kb on + strand, within EX31_RS11640 at 268.825 kb on + strand, within EX31_RS11640 at 268.826 kb on - strand, within EX31_RS11640 at 268.826 kb on - strand, within EX31_RS11640 at 268.826 kb on - strand, within EX31_RS11640 at 268.838 kb on - strand, within EX31_RS11640 at 268.902 kb on - strand, within EX31_RS11640 at 268.902 kb on - strand, within EX31_RS11640 at 268.902 kb on - strand, within EX31_RS11640 at 268.902 kb on - strand, within EX31_RS11640 at 268.905 kb on + strand, within EX31_RS11640 at 268.906 kb on - strand, within EX31_RS11640 at 268.918 kb on + strand, within EX31_RS11640 at 268.927 kb on + strand, within EX31_RS11640 at 269.012 kb on + strand, within EX31_RS11640 at 269.013 kb on - strand, within EX31_RS11640 at 269.013 kb on - strand, within EX31_RS11640 at 269.013 kb on - strand, within EX31_RS11640 at 269.016 kb on + strand, within EX31_RS11640 at 269.016 kb on + strand, within EX31_RS11640 at 269.016 kb on + strand, within EX31_RS11640 at 269.016 kb on + strand, within EX31_RS11640 at 269.017 kb on - strand, within EX31_RS11640 at 269.017 kb on - strand, within EX31_RS11640 at 269.017 kb on - strand, within EX31_RS11640 at 269.017 kb on - strand, within EX31_RS11640 at 269.019 kb on + strand, within EX31_RS11640 at 269.019 kb on + strand, within EX31_RS11640 at 269.019 kb on + strand, within EX31_RS11640 at 269.019 kb on + strand, within EX31_RS11640 at 269.019 kb on + strand, within EX31_RS11640 at 269.020 kb on - strand, within EX31_RS11640 at 269.020 kb on - strand, within EX31_RS11640 at 269.020 kb on - strand, within EX31_RS11640 at 269.021 kb on + strand, within EX31_RS11640 at 269.022 kb on - strand, within EX31_RS11640 at 269.022 kb on - strand, within EX31_RS11640 at 269.039 kb on + strand, within EX31_RS11640 at 269.040 kb on - strand, within EX31_RS11640 at 269.077 kb on + strand, within EX31_RS11640 at 269.077 kb on + strand, within EX31_RS11640 at 269.077 kb on + strand, within EX31_RS11640 at 269.078 kb on - strand, within EX31_RS11640 at 269.078 kb on - strand, within EX31_RS11640 at 269.078 kb on - strand, within EX31_RS11640 at 269.078 kb on - strand, within EX31_RS11640 at 269.078 kb on - strand, within EX31_RS11640 at 269.080 kb on + strand, within EX31_RS11640 at 269.081 kb on - strand, within EX31_RS11640 at 269.081 kb on - strand, within EX31_RS11640 at 269.124 kb on - strand, within EX31_RS11640 at 269.136 kb on - strand, within EX31_RS11640 at 269.136 kb on - strand, within EX31_RS11640 at 269.136 kb on - strand, within EX31_RS11640 at 269.139 kb on - strand, within EX31_RS11640 at 269.141 kb on + strand, within EX31_RS11640 at 269.141 kb on + strand, within EX31_RS11640 at 269.142 kb on - strand, within EX31_RS11640 at 269.177 kb on + strand, within EX31_RS11640 at 269.178 kb on - strand, within EX31_RS11640 at 269.178 kb on - strand, within EX31_RS11640 at 269.178 kb on - strand, within EX31_RS11640 at 269.178 kb on - strand, within EX31_RS11640 at 269.179 kb on + strand, within EX31_RS11640 at 269.179 kb on + strand, within EX31_RS11640 at 269.179 kb on + strand, within EX31_RS11640 at 269.179 kb on + strand, within EX31_RS11640 at 269.180 kb on - strand, within EX31_RS11640 at 269.180 kb on - strand, within EX31_RS11640 at 269.180 kb on - strand, within EX31_RS11640 at 269.180 kb on - strand, within EX31_RS11640 at 269.180 kb on - strand, within EX31_RS11640 at 269.180 kb on - strand, within EX31_RS11640 at 269.180 kb on - strand, within EX31_RS11640 at 269.180 kb on - strand, within EX31_RS11640 at 269.303 kb on + strand, within EX31_RS11640 at 269.304 kb on - strand, within EX31_RS11640 at 269.389 kb on + strand, within EX31_RS11640 at 269.389 kb on + strand, within EX31_RS11640 at 269.389 kb on + strand, within EX31_RS11640 at 269.389 kb on + strand, within EX31_RS11640 at 269.390 kb on - strand, within EX31_RS11640 at 269.390 kb on - strand, within EX31_RS11640 at 269.390 kb on - strand, within EX31_RS11640 at 269.390 kb on - strand, within EX31_RS11640 at 269.390 kb on - strand, within EX31_RS11640
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 266,788 - EX31_RS11630 0.63 +0.1 266,939 + EX31_RS11630 0.73 -0.2 266,940 - EX31_RS11630 0.73 +0.2 266,940 - EX31_RS11630 0.73 +0.7 266,940 - EX31_RS11630 0.73 +0.2 266,940 - EX31_RS11630 0.73 -0.3 266,940 - EX31_RS11630 0.73 -0.7 266,940 - EX31_RS11630 0.73 -0.7 266,940 - EX31_RS11630 0.73 -0.8 266,959 - EX31_RS11630 0.75 -0.1 267,008 - EX31_RS11630 0.78 +0.4 267,011 + EX31_RS11630 0.78 -0.2 267,011 + EX31_RS11630 0.78 +1.5 267,012 - EX31_RS11630 0.78 -0.5 267,012 - EX31_RS11630 0.78 +0.7 267,045 - EX31_RS11630 0.80 -0.3 267,045 - EX31_RS11630 0.80 -0.4 267,045 - EX31_RS11630 0.80 -1.1 267,076 + EX31_RS11630 0.83 +0.1 267,076 + EX31_RS11630 0.83 -0.3 267,076 + EX31_RS11630 0.83 -0.1 267,121 - EX31_RS11630 0.86 +1.9 267,121 - EX31_RS11630 0.86 -0.2 267,135 - EX31_RS11630 0.87 +0.5 267,135 - EX31_RS11630 0.87 +0.8 267,135 - EX31_RS11630 0.87 -1.1 267,258 - -0.5 267,353 + -2.8 267,354 - +0.8 267,457 + +0.7 267,512 - -0.3 267,530 + -1.5 267,611 + -0.0 267,612 - +0.3 267,622 + -0.2 267,623 - -0.1 267,623 - +1.3 267,623 - -0.3 267,623 - +0.0 267,626 + -1.4 267,626 + -1.0 267,626 + -0.2 267,626 + +0.1 267,626 + -0.7 267,627 - +0.8 267,627 - +0.1 267,627 - +0.1 267,627 - -0.2 267,627 - +2.1 267,627 - +2.1 267,656 - EX31_RS11635 0.11 -0.8 267,671 - EX31_RS11635 0.13 +1.6 267,854 - EX31_RS11635 0.34 -0.7 267,854 - EX31_RS11635 0.34 -0.3 268,135 + EX31_RS11635 0.67 -0.5 268,136 - EX31_RS11635 0.67 +0.4 268,136 - EX31_RS11635 0.67 -1.7 268,218 - EX31_RS11635 0.77 +0.2 268,385 + -1.0 268,526 - -0.2 268,557 + +0.5 268,558 - +0.4 268,611 - +0.1 268,611 - +0.3 268,687 - -0.6 268,687 - +0.3 268,690 + -0.0 268,690 + -0.2 268,690 + +0.2 268,690 + +1.4 268,690 + +0.0 268,690 + +0.1 268,690 + -1.3 268,690 + +0.4 268,691 - +0.1 268,691 - +0.5 268,691 - +0.2 268,691 - -1.8 268,691 - -0.1 268,691 - -0.5 268,691 - +0.7 268,691 - +0.2 268,691 - +0.7 268,691 - +0.1 268,691 - -1.0 268,691 - +0.9 268,691 - -0.6 268,691 - -0.5 268,691 - +0.4 268,691 - -0.5 268,691 - -0.3 268,691 - +0.1 268,691 - +0.3 268,691 - -0.4 268,691 - +0.7 268,691 - -0.3 268,691 - +0.5 268,691 - -1.7 268,694 + -1.6 268,694 + -0.8 268,694 + +0.0 268,694 + -1.4 268,695 - +0.1 268,695 - -0.1 268,695 - -0.3 268,695 - -0.0 268,695 - +0.2 268,695 - -0.3 268,695 - -0.5 268,695 - -0.0 268,695 - -1.0 268,695 - +0.1 268,695 - -0.2 268,695 - -1.8 268,695 - +0.7 268,695 - -0.7 268,695 - +0.3 268,696 + -0.0 268,696 + +0.4 268,696 + +0.6 268,697 - -0.4 268,697 - -0.4 268,697 - +0.1 268,697 - +1.5 268,697 - +0.5 268,697 - -0.0 268,697 - -2.5 268,697 - +1.3 268,697 - +0.2 268,697 - +0.8 268,697 - +0.7 268,697 - -0.8 268,697 - -2.0 268,697 - +0.1 268,825 + EX31_RS11640 0.17 -0.1 268,825 + EX31_RS11640 0.17 +0.3 268,825 + EX31_RS11640 0.17 -0.8 268,826 - EX31_RS11640 0.18 +0.1 268,826 - EX31_RS11640 0.18 +0.4 268,826 - EX31_RS11640 0.18 -0.1 268,838 - EX31_RS11640 0.18 +0.0 268,902 - EX31_RS11640 0.23 +0.1 268,902 - EX31_RS11640 0.23 -0.3 268,902 - EX31_RS11640 0.23 +1.4 268,902 - EX31_RS11640 0.23 -0.6 268,905 + EX31_RS11640 0.23 +0.3 268,906 - EX31_RS11640 0.23 +0.8 268,918 + EX31_RS11640 0.24 +0.0 268,927 + EX31_RS11640 0.25 +0.3 269,012 + EX31_RS11640 0.31 +0.5 269,013 - EX31_RS11640 0.31 -0.5 269,013 - EX31_RS11640 0.31 -0.4 269,013 - EX31_RS11640 0.31 +0.9 269,016 + EX31_RS11640 0.31 -0.4 269,016 + EX31_RS11640 0.31 -0.7 269,016 + EX31_RS11640 0.31 -0.0 269,016 + EX31_RS11640 0.31 -0.2 269,017 - EX31_RS11640 0.31 +0.6 269,017 - EX31_RS11640 0.31 -0.4 269,017 - EX31_RS11640 0.31 +1.7 269,017 - EX31_RS11640 0.31 +0.0 269,019 + EX31_RS11640 0.31 +0.4 269,019 + EX31_RS11640 0.31 -0.3 269,019 + EX31_RS11640 0.31 -0.4 269,019 + EX31_RS11640 0.31 -0.2 269,019 + EX31_RS11640 0.31 +0.1 269,020 - EX31_RS11640 0.31 -0.4 269,020 - EX31_RS11640 0.31 +0.4 269,020 - EX31_RS11640 0.31 +0.3 269,021 + EX31_RS11640 0.31 -0.2 269,022 - EX31_RS11640 0.32 -0.0 269,022 - EX31_RS11640 0.32 +1.2 269,039 + EX31_RS11640 0.33 +0.6 269,040 - EX31_RS11640 0.33 -1.1 269,077 + EX31_RS11640 0.35 +0.2 269,077 + EX31_RS11640 0.35 -1.1 269,077 + EX31_RS11640 0.35 -2.5 269,078 - EX31_RS11640 0.36 +1.0 269,078 - EX31_RS11640 0.36 +0.6 269,078 - EX31_RS11640 0.36 -1.0 269,078 - EX31_RS11640 0.36 -0.1 269,078 - EX31_RS11640 0.36 -0.5 269,080 + EX31_RS11640 0.36 +0.3 269,081 - EX31_RS11640 0.36 +0.2 269,081 - EX31_RS11640 0.36 +0.3 269,124 - EX31_RS11640 0.39 +0.7 269,136 - EX31_RS11640 0.40 -0.6 269,136 - EX31_RS11640 0.40 -0.4 269,136 - EX31_RS11640 0.40 -0.9 269,139 - EX31_RS11640 0.40 +0.5 269,141 + EX31_RS11640 0.40 -0.7 269,141 + EX31_RS11640 0.40 -0.7 269,142 - EX31_RS11640 0.40 +0.5 269,177 + EX31_RS11640 0.43 +0.3 269,178 - EX31_RS11640 0.43 -0.9 269,178 - EX31_RS11640 0.43 +0.4 269,178 - EX31_RS11640 0.43 +0.9 269,178 - EX31_RS11640 0.43 +1.4 269,179 + EX31_RS11640 0.43 -0.4 269,179 + EX31_RS11640 0.43 -0.7 269,179 + EX31_RS11640 0.43 -0.4 269,179 + EX31_RS11640 0.43 +0.6 269,180 - EX31_RS11640 0.43 +0.5 269,180 - EX31_RS11640 0.43 -0.2 269,180 - EX31_RS11640 0.43 -1.1 269,180 - EX31_RS11640 0.43 -0.4 269,180 - EX31_RS11640 0.43 -0.1 269,180 - EX31_RS11640 0.43 -0.6 269,180 - EX31_RS11640 0.43 -0.7 269,180 - EX31_RS11640 0.43 -0.4 269,303 + EX31_RS11640 0.52 -1.4 269,304 - EX31_RS11640 0.52 -0.8 269,389 + EX31_RS11640 0.58 +0.4 269,389 + EX31_RS11640 0.58 -0.2 269,389 + EX31_RS11640 0.58 +0.4 269,389 + EX31_RS11640 0.58 +0.1 269,390 - EX31_RS11640 0.58 -1.0 269,390 - EX31_RS11640 0.58 -0.6 269,390 - EX31_RS11640 0.58 +2.6 269,390 - EX31_RS11640 0.58 -0.4 269,390 - EX31_RS11640 0.58 +0.1
Or see this region's nucleotide sequence