Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10365 and EX31_RS10375 are separated by 508 nucleotides EX31_RS10375 and EX31_RS10380 are separated by 93 nucleotides EX31_RS10380 and EX31_RS10385 are separated by 298 nucleotides
EX31_RS10365: EX31_RS10365 - hypothetical protein, at 285,692 to 285,910
_RS10365
EX31_RS10375: EX31_RS10375 - hypothetical protein, at 286,419 to 286,655
_RS10375
EX31_RS10380: EX31_RS10380 - DUF4440 domain-containing protein, at 286,749 to 287,105
_RS10380
EX31_RS10385: EX31_RS10385 - arylamine N-acetyltransferase, at 287,404 to 288,192
_RS10385
Position (kb) 286
287
288 Strain fitness (log2 ratio) -2
-1
0
1
2 at 285.861 kb on + strand, within EX31_RS10365 at 285.861 kb on + strand, within EX31_RS10365 at 285.926 kb on + strand at 285.927 kb on - strand at 285.927 kb on - strand at 285.927 kb on - strand at 285.930 kb on + strand at 285.930 kb on + strand at 285.930 kb on + strand at 285.960 kb on - strand at 285.968 kb on + strand at 285.968 kb on + strand at 285.968 kb on + strand at 285.968 kb on + strand at 285.969 kb on - strand at 286.013 kb on + strand at 286.013 kb on + strand at 286.013 kb on + strand at 286.013 kb on + strand at 286.013 kb on + strand at 286.014 kb on - strand at 286.014 kb on - strand at 286.014 kb on - strand at 286.014 kb on - strand at 286.014 kb on - strand at 286.014 kb on - strand at 286.016 kb on + strand at 286.016 kb on + strand at 286.016 kb on + strand at 286.017 kb on - strand at 286.017 kb on - strand at 286.090 kb on + strand at 286.090 kb on + strand at 286.090 kb on + strand at 286.090 kb on + strand at 286.090 kb on + strand at 286.091 kb on - strand at 286.141 kb on + strand at 286.145 kb on - strand at 286.176 kb on + strand at 286.177 kb on - strand at 286.203 kb on - strand at 286.259 kb on - strand at 286.263 kb on + strand at 286.274 kb on + strand at 286.327 kb on + strand at 286.332 kb on + strand at 286.332 kb on + strand at 286.333 kb on - strand at 286.335 kb on + strand at 286.336 kb on - strand at 286.432 kb on + strand at 286.432 kb on + strand at 286.439 kb on - strand at 286.451 kb on + strand, within EX31_RS10375 at 286.451 kb on + strand, within EX31_RS10375 at 286.452 kb on - strand, within EX31_RS10375 at 286.481 kb on + strand, within EX31_RS10375 at 286.481 kb on + strand, within EX31_RS10375 at 286.482 kb on - strand, within EX31_RS10375 at 286.482 kb on - strand, within EX31_RS10375 at 286.576 kb on + strand, within EX31_RS10375 at 286.834 kb on - strand, within EX31_RS10380 at 286.834 kb on - strand, within EX31_RS10380 at 286.859 kb on + strand, within EX31_RS10380 at 286.871 kb on - strand, within EX31_RS10380 at 286.888 kb on + strand, within EX31_RS10380 at 286.889 kb on - strand, within EX31_RS10380 at 286.922 kb on + strand, within EX31_RS10380 at 286.963 kb on - strand, within EX31_RS10380 at 286.984 kb on - strand, within EX31_RS10380 at 286.987 kb on - strand, within EX31_RS10380 at 286.987 kb on - strand, within EX31_RS10380 at 287.026 kb on - strand, within EX31_RS10380 at 287.146 kb on - strand at 287.146 kb on - strand at 287.150 kb on + strand at 287.171 kb on - strand at 287.186 kb on + strand at 287.186 kb on + strand at 287.244 kb on + strand at 287.245 kb on - strand at 287.269 kb on - strand at 287.271 kb on + strand at 287.271 kb on + strand at 287.271 kb on + strand at 287.272 kb on - strand at 287.343 kb on + strand at 287.344 kb on - strand at 287.344 kb on - strand at 287.344 kb on - strand at 287.344 kb on - strand at 287.344 kb on - strand at 287.345 kb on + strand at 287.345 kb on + strand at 287.346 kb on - strand at 287.346 kb on - strand at 287.362 kb on + strand at 287.363 kb on - strand at 287.363 kb on - strand at 287.365 kb on - strand at 287.378 kb on - strand at 287.381 kb on + strand at 287.382 kb on - strand at 287.382 kb on - strand at 287.423 kb on + strand at 287.423 kb on + strand at 287.423 kb on + strand at 287.424 kb on - strand at 287.424 kb on - strand at 287.619 kb on - strand, within EX31_RS10385 at 287.669 kb on + strand, within EX31_RS10385 at 287.711 kb on + strand, within EX31_RS10385 at 287.712 kb on - strand, within EX31_RS10385 at 287.712 kb on - strand, within EX31_RS10385 at 287.719 kb on - strand, within EX31_RS10385 at 287.721 kb on + strand, within EX31_RS10385 at 287.734 kb on - strand, within EX31_RS10385 at 287.783 kb on - strand, within EX31_RS10385 at 287.802 kb on + strand, within EX31_RS10385 at 287.802 kb on + strand, within EX31_RS10385 at 287.807 kb on + strand, within EX31_RS10385 at 287.808 kb on - strand, within EX31_RS10385 at 287.808 kb on - strand, within EX31_RS10385 at 287.821 kb on + strand, within EX31_RS10385 at 287.821 kb on + strand, within EX31_RS10385 at 287.860 kb on + strand, within EX31_RS10385 at 287.861 kb on - strand, within EX31_RS10385 at 287.895 kb on - strand, within EX31_RS10385 at 287.895 kb on - strand, within EX31_RS10385 at 287.928 kb on + strand, within EX31_RS10385 at 287.931 kb on + strand, within EX31_RS10385 at 287.932 kb on - strand, within EX31_RS10385 at 287.935 kb on + strand, within EX31_RS10385 at 287.936 kb on - strand, within EX31_RS10385 at 287.936 kb on - strand, within EX31_RS10385 at 287.936 kb on - strand, within EX31_RS10385 at 287.936 kb on - strand, within EX31_RS10385 at 287.959 kb on + strand, within EX31_RS10385 at 287.975 kb on + strand, within EX31_RS10385 at 288.056 kb on - strand, within EX31_RS10385
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 285,861 + EX31_RS10365 0.77 +1.2 285,861 + EX31_RS10365 0.77 -0.7 285,926 + -0.6 285,927 - +0.4 285,927 - +1.9 285,927 - -1.4 285,930 + +0.6 285,930 + +0.0 285,930 + -2.1 285,960 - -0.5 285,968 + +0.8 285,968 + -0.3 285,968 + +1.1 285,968 + -0.6 285,969 - +0.1 286,013 + -0.5 286,013 + +0.8 286,013 + +1.1 286,013 + -0.9 286,013 + -0.2 286,014 - -0.2 286,014 - -0.4 286,014 - -1.1 286,014 - -0.3 286,014 - -0.5 286,014 - -0.7 286,016 + -0.1 286,016 + -0.2 286,016 + -0.4 286,017 - +0.4 286,017 - -0.2 286,090 + -0.6 286,090 + +0.3 286,090 + +0.6 286,090 + -0.1 286,090 + +0.1 286,091 - -1.3 286,141 + +0.0 286,145 - +0.5 286,176 + -1.1 286,177 - +0.0 286,203 - -0.0 286,259 - -0.3 286,263 + -0.6 286,274 + -0.3 286,327 + -0.4 286,332 + -0.0 286,332 + -0.4 286,333 - -0.3 286,335 + -0.7 286,336 - -0.0 286,432 + -1.2 286,432 + +0.1 286,439 - -0.7 286,451 + EX31_RS10375 0.14 -0.8 286,451 + EX31_RS10375 0.14 -1.0 286,452 - EX31_RS10375 0.14 +0.2 286,481 + EX31_RS10375 0.26 -0.4 286,481 + EX31_RS10375 0.26 +0.7 286,482 - EX31_RS10375 0.27 +0.4 286,482 - EX31_RS10375 0.27 +0.1 286,576 + EX31_RS10375 0.66 -0.1 286,834 - EX31_RS10380 0.24 -0.3 286,834 - EX31_RS10380 0.24 +0.0 286,859 + EX31_RS10380 0.31 -0.8 286,871 - EX31_RS10380 0.34 -0.4 286,888 + EX31_RS10380 0.39 -0.1 286,889 - EX31_RS10380 0.39 -0.3 286,922 + EX31_RS10380 0.48 -0.3 286,963 - EX31_RS10380 0.60 -0.9 286,984 - EX31_RS10380 0.66 -0.7 286,987 - EX31_RS10380 0.67 -0.6 286,987 - EX31_RS10380 0.67 -1.5 287,026 - EX31_RS10380 0.78 +0.3 287,146 - +0.1 287,146 - +0.1 287,150 + +0.7 287,171 - -0.7 287,186 + -0.1 287,186 + -0.1 287,244 + +0.4 287,245 - -0.2 287,269 - +0.8 287,271 + -0.1 287,271 + +1.6 287,271 + +0.3 287,272 - +0.1 287,343 + +1.2 287,344 - -0.5 287,344 - +0.5 287,344 - +1.5 287,344 - -0.4 287,344 - +0.4 287,345 + -0.2 287,345 + -0.7 287,346 - -0.2 287,346 - +0.4 287,362 + -0.1 287,363 - +1.4 287,363 - +0.5 287,365 - +0.3 287,378 - -0.2 287,381 + +0.9 287,382 - +0.3 287,382 - -0.2 287,423 + -0.5 287,423 + +0.3 287,423 + +0.0 287,424 - -0.9 287,424 - -0.0 287,619 - EX31_RS10385 0.27 +0.3 287,669 + EX31_RS10385 0.34 -1.3 287,711 + EX31_RS10385 0.39 +0.3 287,712 - EX31_RS10385 0.39 -0.3 287,712 - EX31_RS10385 0.39 -1.3 287,719 - EX31_RS10385 0.40 -1.8 287,721 + EX31_RS10385 0.40 +0.3 287,734 - EX31_RS10385 0.42 +0.0 287,783 - EX31_RS10385 0.48 -0.2 287,802 + EX31_RS10385 0.50 +0.7 287,802 + EX31_RS10385 0.50 +1.2 287,807 + EX31_RS10385 0.51 +0.3 287,808 - EX31_RS10385 0.51 +0.2 287,808 - EX31_RS10385 0.51 -0.1 287,821 + EX31_RS10385 0.53 -0.2 287,821 + EX31_RS10385 0.53 +1.3 287,860 + EX31_RS10385 0.58 -0.7 287,861 - EX31_RS10385 0.58 +0.6 287,895 - EX31_RS10385 0.62 -0.2 287,895 - EX31_RS10385 0.62 -0.4 287,928 + EX31_RS10385 0.66 +0.6 287,931 + EX31_RS10385 0.67 +1.2 287,932 - EX31_RS10385 0.67 -1.9 287,935 + EX31_RS10385 0.67 -2.2 287,936 - EX31_RS10385 0.67 +0.3 287,936 - EX31_RS10385 0.67 -0.7 287,936 - EX31_RS10385 0.67 -0.4 287,936 - EX31_RS10385 0.67 +0.1 287,959 + EX31_RS10385 0.70 -0.2 287,975 + EX31_RS10385 0.72 -0.0 288,056 - EX31_RS10385 0.83 -1.8
Or see this region's nucleotide sequence