Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08585 and EX31_RS08590 are separated by 182 nucleotides EX31_RS08590 and EX31_RS08595 are separated by 180 nucleotides EX31_RS08595 and EX31_RS08600 are separated by 281 nucleotides
EX31_RS08585: EX31_RS08585 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 224,489 to 225,118
_RS08585
EX31_RS08590: EX31_RS08590 - ribosome assembly RNA-binding protein YhbY, at 225,301 to 225,597
_RS08590
EX31_RS08595: EX31_RS08595 - transcription elongation factor GreA, at 225,778 to 226,254
_RS08595
EX31_RS08600: EX31_RS08600 - serine-type D-Ala-D-Ala carboxypeptidase, at 226,536 to 227,969
_RS08600
Position (kb) 225
226
227 Strain fitness (log2 ratio) -2
-1
0
1 at 225.133 kb on - strand at 225.133 kb on - strand at 225.133 kb on - strand at 225.133 kb on - strand at 225.135 kb on - strand at 225.135 kb on - strand at 225.135 kb on - strand at 225.135 kb on - strand at 225.135 kb on - strand at 225.135 kb on - strand at 225.135 kb on - strand at 225.135 kb on - strand at 225.135 kb on - strand at 225.135 kb on - strand at 225.157 kb on - strand at 225.194 kb on - strand at 225.194 kb on - strand at 225.200 kb on - strand at 225.200 kb on - strand at 225.200 kb on - strand at 225.200 kb on - strand at 225.208 kb on - strand at 225.208 kb on - strand at 225.211 kb on - strand at 225.211 kb on - strand at 225.211 kb on - strand at 225.243 kb on - strand at 225.243 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.245 kb on - strand at 225.260 kb on - strand at 225.287 kb on - strand at 225.310 kb on - strand at 225.310 kb on - strand at 225.310 kb on - strand at 225.316 kb on - strand at 225.316 kb on - strand at 225.366 kb on + strand, within EX31_RS08590 at 225.367 kb on - strand, within EX31_RS08590 at 225.367 kb on - strand, within EX31_RS08590 at 225.367 kb on - strand, within EX31_RS08590 at 225.367 kb on - strand, within EX31_RS08590 at 225.447 kb on + strand, within EX31_RS08590 at 225.519 kb on + strand, within EX31_RS08590 at 225.520 kb on - strand, within EX31_RS08590 at 225.520 kb on - strand, within EX31_RS08590 at 225.540 kb on + strand, within EX31_RS08590 at 225.541 kb on - strand, within EX31_RS08590 at 225.541 kb on - strand, within EX31_RS08590 at 225.549 kb on - strand, within EX31_RS08590 at 225.549 kb on - strand, within EX31_RS08590 at 225.549 kb on - strand, within EX31_RS08590 at 225.583 kb on - strand at 225.604 kb on - strand at 225.625 kb on + strand at 225.625 kb on + strand at 225.626 kb on - strand at 225.626 kb on - strand at 225.690 kb on - strand at 225.701 kb on + strand at 225.701 kb on + strand at 225.702 kb on - strand at 225.736 kb on + strand at 225.736 kb on + strand at 225.768 kb on - strand at 225.768 kb on - strand at 225.768 kb on - strand at 225.785 kb on + strand at 225.785 kb on + strand at 225.785 kb on + strand at 225.785 kb on + strand at 225.786 kb on - strand at 225.786 kb on - strand at 225.786 kb on - strand at 225.799 kb on + strand at 225.800 kb on - strand at 225.800 kb on - strand at 225.800 kb on - strand at 225.800 kb on - strand at 225.800 kb on - strand at 225.800 kb on - strand at 225.800 kb on - strand at 225.800 kb on - strand at 225.800 kb on - strand at 225.800 kb on - strand at 225.800 kb on - strand at 225.800 kb on - strand at 225.800 kb on - strand at 226.033 kb on - strand, within EX31_RS08595 at 226.033 kb on - strand, within EX31_RS08595 at 226.053 kb on + strand, within EX31_RS08595 at 226.214 kb on - strand at 226.214 kb on - strand at 226.231 kb on + strand at 226.231 kb on + strand at 226.254 kb on + strand at 226.255 kb on - strand at 226.255 kb on - strand at 226.256 kb on + strand at 226.256 kb on + strand at 226.257 kb on - strand at 226.257 kb on - strand at 226.257 kb on - strand at 226.257 kb on - strand at 226.257 kb on - strand at 226.257 kb on - strand at 226.257 kb on - strand at 226.257 kb on - strand at 226.257 kb on - strand at 226.260 kb on + strand at 226.260 kb on + strand at 226.261 kb on - strand at 226.261 kb on - strand at 226.261 kb on - strand at 226.261 kb on - strand at 226.261 kb on - strand at 226.261 kb on - strand at 226.261 kb on - strand at 226.261 kb on - strand at 226.261 kb on - strand at 226.261 kb on - strand at 226.263 kb on + strand at 226.263 kb on + strand at 226.264 kb on - strand at 226.264 kb on - strand at 226.264 kb on - strand at 226.264 kb on - strand at 226.264 kb on - strand at 226.269 kb on + strand at 226.312 kb on - strand at 226.319 kb on + strand at 226.320 kb on - strand at 226.414 kb on + strand at 226.419 kb on + strand at 226.420 kb on - strand at 226.424 kb on + strand at 226.425 kb on - strand at 226.425 kb on - strand at 226.425 kb on - strand at 226.448 kb on + strand at 226.478 kb on - strand at 226.485 kb on + strand at 226.485 kb on + strand at 226.486 kb on - strand at 226.486 kb on - strand at 226.486 kb on - strand at 226.486 kb on - strand at 226.486 kb on - strand at 226.489 kb on - strand at 226.489 kb on - strand at 226.502 kb on - strand at 226.525 kb on + strand at 226.526 kb on - strand at 226.535 kb on - strand at 226.564 kb on + strand at 226.565 kb on - strand at 226.565 kb on - strand at 226.565 kb on - strand at 226.565 kb on - strand at 226.586 kb on + strand at 226.586 kb on + strand at 226.587 kb on - strand at 226.620 kb on + strand at 226.620 kb on + strand at 226.620 kb on + strand at 226.621 kb on - strand at 226.621 kb on - strand at 226.621 kb on - strand at 226.654 kb on + strand at 226.721 kb on + strand, within EX31_RS08600 at 226.721 kb on + strand, within EX31_RS08600 at 226.722 kb on - strand, within EX31_RS08600 at 226.724 kb on + strand, within EX31_RS08600 at 226.724 kb on + strand, within EX31_RS08600 at 226.724 kb on + strand, within EX31_RS08600 at 226.724 kb on + strand, within EX31_RS08600 at 226.724 kb on + strand, within EX31_RS08600 at 226.724 kb on + strand, within EX31_RS08600 at 226.724 kb on + strand, within EX31_RS08600 at 226.725 kb on - strand, within EX31_RS08600 at 226.787 kb on + strand, within EX31_RS08600 at 226.787 kb on + strand, within EX31_RS08600 at 226.788 kb on - strand, within EX31_RS08600 at 226.788 kb on - strand, within EX31_RS08600 at 226.792 kb on + strand, within EX31_RS08600 at 226.792 kb on + strand, within EX31_RS08600 at 226.792 kb on + strand, within EX31_RS08600 at 226.792 kb on + strand, within EX31_RS08600 at 226.792 kb on + strand, within EX31_RS08600 at 226.792 kb on + strand, within EX31_RS08600 at 226.793 kb on - strand, within EX31_RS08600 at 226.889 kb on + strand, within EX31_RS08600 at 226.889 kb on + strand, within EX31_RS08600 at 226.889 kb on + strand, within EX31_RS08600 at 226.889 kb on + strand, within EX31_RS08600 at 226.890 kb on - strand, within EX31_RS08600 at 226.890 kb on - strand, within EX31_RS08600 at 226.947 kb on - strand, within EX31_RS08600 at 227.063 kb on - strand, within EX31_RS08600 at 227.063 kb on - strand, within EX31_RS08600 at 227.070 kb on + strand, within EX31_RS08600 at 227.070 kb on + strand, within EX31_RS08600 at 227.070 kb on + strand, within EX31_RS08600 at 227.071 kb on - strand, within EX31_RS08600 at 227.071 kb on - strand, within EX31_RS08600 at 227.073 kb on - strand, within EX31_RS08600 at 227.081 kb on + strand, within EX31_RS08600 at 227.081 kb on + strand, within EX31_RS08600 at 227.118 kb on + strand, within EX31_RS08600 at 227.119 kb on - strand, within EX31_RS08600 at 227.122 kb on - strand, within EX31_RS08600 at 227.132 kb on + strand, within EX31_RS08600 at 227.132 kb on + strand, within EX31_RS08600 at 227.132 kb on + strand, within EX31_RS08600 at 227.132 kb on + strand, within EX31_RS08600 at 227.132 kb on + strand, within EX31_RS08600 at 227.132 kb on + strand, within EX31_RS08600 at 227.132 kb on + strand, within EX31_RS08600 at 227.132 kb on + strand, within EX31_RS08600 at 227.132 kb on + strand, within EX31_RS08600 at 227.133 kb on - strand, within EX31_RS08600 at 227.133 kb on - strand, within EX31_RS08600 at 227.133 kb on - strand, within EX31_RS08600 at 227.133 kb on - strand, within EX31_RS08600 at 227.133 kb on - strand, within EX31_RS08600 at 227.133 kb on - strand, within EX31_RS08600 at 227.133 kb on - strand, within EX31_RS08600 at 227.133 kb on - strand, within EX31_RS08600 at 227.133 kb on - strand, within EX31_RS08600 at 227.133 kb on - strand, within EX31_RS08600 at 227.133 kb on - strand, within EX31_RS08600 at 227.221 kb on - strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.222 kb on + strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600 at 227.223 kb on - strand, within EX31_RS08600
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 225,133 - +0.1 225,133 - -1.4 225,133 - +0.1 225,133 - +0.1 225,135 - -0.5 225,135 - +1.0 225,135 - -0.6 225,135 - +0.5 225,135 - -0.4 225,135 - +0.6 225,135 - +0.6 225,135 - -0.4 225,135 - +0.4 225,135 - -0.2 225,157 - -0.2 225,194 - +0.3 225,194 - +0.4 225,200 - +0.0 225,200 - +0.0 225,200 - -0.0 225,200 - +0.7 225,208 - -0.0 225,208 - +0.1 225,211 - -0.7 225,211 - -0.3 225,211 - -0.5 225,243 - -0.5 225,243 - +0.2 225,245 - -0.2 225,245 - +0.6 225,245 - +1.2 225,245 - -0.3 225,245 - +0.7 225,245 - -0.3 225,245 - -0.4 225,245 - +0.3 225,245 - -0.1 225,245 - -0.0 225,245 - +0.9 225,245 - -0.0 225,245 - +0.4 225,245 - -0.1 225,245 - +0.9 225,245 - -0.1 225,245 - +0.1 225,245 - +0.3 225,245 - -0.3 225,245 - -0.2 225,245 - +0.2 225,245 - -0.3 225,245 - +0.5 225,245 - -0.1 225,245 - +0.4 225,245 - +0.9 225,245 - +1.1 225,245 - +0.2 225,245 - +0.6 225,245 - -0.3 225,245 - +0.1 225,245 - +0.5 225,245 - -0.3 225,245 - +0.8 225,245 - -0.2 225,245 - -1.0 225,245 - +0.1 225,245 - +0.1 225,260 - -0.1 225,287 - +0.4 225,310 - +0.5 225,310 - +0.2 225,310 - -0.5 225,316 - -0.1 225,316 - +0.8 225,366 + EX31_RS08590 0.22 +0.5 225,367 - EX31_RS08590 0.22 +0.7 225,367 - EX31_RS08590 0.22 +0.8 225,367 - EX31_RS08590 0.22 -0.2 225,367 - EX31_RS08590 0.22 +0.7 225,447 + EX31_RS08590 0.49 -0.2 225,519 + EX31_RS08590 0.73 +0.2 225,520 - EX31_RS08590 0.74 +0.2 225,520 - EX31_RS08590 0.74 -0.5 225,540 + EX31_RS08590 0.80 +0.1 225,541 - EX31_RS08590 0.81 +0.1 225,541 - EX31_RS08590 0.81 -0.8 225,549 - EX31_RS08590 0.84 +0.5 225,549 - EX31_RS08590 0.84 +0.6 225,549 - EX31_RS08590 0.84 -0.5 225,583 - -0.7 225,604 - +0.6 225,625 + -0.2 225,625 + +0.1 225,626 - -0.2 225,626 - -0.2 225,690 - -0.3 225,701 + -0.5 225,701 + +0.2 225,702 - +0.4 225,736 + +0.8 225,736 + -1.7 225,768 - -1.6 225,768 - -0.2 225,768 - +0.2 225,785 + -0.5 225,785 + -1.2 225,785 + -0.2 225,785 + +0.9 225,786 - -0.2 225,786 - +0.1 225,786 - -0.3 225,799 + -0.2 225,800 - -1.2 225,800 - +0.6 225,800 - -1.1 225,800 - +0.5 225,800 - -0.5 225,800 - -0.2 225,800 - -0.3 225,800 - -0.1 225,800 - +0.5 225,800 - -1.6 225,800 - +0.8 225,800 - +0.6 225,800 - -1.6 226,033 - EX31_RS08595 0.53 -0.5 226,033 - EX31_RS08595 0.53 -0.5 226,053 + EX31_RS08595 0.58 -0.5 226,214 - -0.8 226,214 - -0.5 226,231 + +0.1 226,231 + -1.2 226,254 + +0.1 226,255 - +0.2 226,255 - +0.1 226,256 + -0.4 226,256 + +0.2 226,257 - +0.3 226,257 - +0.7 226,257 - -0.1 226,257 - +0.1 226,257 - +0.3 226,257 - +0.2 226,257 - -0.4 226,257 - -0.1 226,257 - +0.3 226,260 + -1.8 226,260 + -1.2 226,261 - +0.6 226,261 - -0.5 226,261 - -0.1 226,261 - +0.5 226,261 - -0.6 226,261 - -0.3 226,261 - +1.1 226,261 - -1.1 226,261 - -0.7 226,261 - -0.3 226,263 + -1.2 226,263 + +1.1 226,264 - -0.0 226,264 - +0.4 226,264 - -0.1 226,264 - +0.6 226,264 - -0.8 226,269 + -0.9 226,312 - -1.4 226,319 + -0.3 226,320 - -0.7 226,414 + +0.0 226,419 + -0.1 226,420 - +0.2 226,424 + +0.1 226,425 - +0.5 226,425 - -0.1 226,425 - +0.2 226,448 + -0.1 226,478 - +1.0 226,485 + -0.1 226,485 + -0.6 226,486 - -0.1 226,486 - -0.2 226,486 - +0.9 226,486 - -0.4 226,486 - -0.2 226,489 - -0.2 226,489 - -2.3 226,502 - -0.1 226,525 + +0.8 226,526 - +0.2 226,535 - -0.3 226,564 + +0.3 226,565 - -0.4 226,565 - -0.1 226,565 - +0.4 226,565 - +0.3 226,586 + -0.5 226,586 + -0.2 226,587 - +0.6 226,620 + +0.2 226,620 + -0.2 226,620 + +0.7 226,621 - +0.0 226,621 - +0.0 226,621 - -1.7 226,654 + +0.4 226,721 + EX31_RS08600 0.13 +0.4 226,721 + EX31_RS08600 0.13 -0.3 226,722 - EX31_RS08600 0.13 -0.4 226,724 + EX31_RS08600 0.13 -0.2 226,724 + EX31_RS08600 0.13 -0.0 226,724 + EX31_RS08600 0.13 -0.1 226,724 + EX31_RS08600 0.13 +0.3 226,724 + EX31_RS08600 0.13 +0.1 226,724 + EX31_RS08600 0.13 +0.2 226,724 + EX31_RS08600 0.13 +1.6 226,725 - EX31_RS08600 0.13 -0.0 226,787 + EX31_RS08600 0.18 -1.0 226,787 + EX31_RS08600 0.18 -0.4 226,788 - EX31_RS08600 0.18 +0.1 226,788 - EX31_RS08600 0.18 -0.1 226,792 + EX31_RS08600 0.18 -0.5 226,792 + EX31_RS08600 0.18 -0.5 226,792 + EX31_RS08600 0.18 -0.6 226,792 + EX31_RS08600 0.18 +0.1 226,792 + EX31_RS08600 0.18 -0.1 226,792 + EX31_RS08600 0.18 -0.9 226,793 - EX31_RS08600 0.18 -0.4 226,889 + EX31_RS08600 0.25 +0.1 226,889 + EX31_RS08600 0.25 +0.2 226,889 + EX31_RS08600 0.25 +0.2 226,889 + EX31_RS08600 0.25 +0.8 226,890 - EX31_RS08600 0.25 +0.2 226,890 - EX31_RS08600 0.25 +0.3 226,947 - EX31_RS08600 0.29 +0.1 227,063 - EX31_RS08600 0.37 -0.8 227,063 - EX31_RS08600 0.37 +0.0 227,070 + EX31_RS08600 0.37 +0.1 227,070 + EX31_RS08600 0.37 +0.2 227,070 + EX31_RS08600 0.37 -0.7 227,071 - EX31_RS08600 0.37 +0.8 227,071 - EX31_RS08600 0.37 +0.5 227,073 - EX31_RS08600 0.37 -0.1 227,081 + EX31_RS08600 0.38 +0.3 227,081 + EX31_RS08600 0.38 +0.7 227,118 + EX31_RS08600 0.41 -0.7 227,119 - EX31_RS08600 0.41 +0.0 227,122 - EX31_RS08600 0.41 +0.1 227,132 + EX31_RS08600 0.42 +0.3 227,132 + EX31_RS08600 0.42 +0.4 227,132 + EX31_RS08600 0.42 -0.1 227,132 + EX31_RS08600 0.42 +0.1 227,132 + EX31_RS08600 0.42 +0.3 227,132 + EX31_RS08600 0.42 +0.5 227,132 + EX31_RS08600 0.42 -0.1 227,132 + EX31_RS08600 0.42 -0.5 227,132 + EX31_RS08600 0.42 -0.1 227,133 - EX31_RS08600 0.42 +0.2 227,133 - EX31_RS08600 0.42 -0.4 227,133 - EX31_RS08600 0.42 -0.1 227,133 - EX31_RS08600 0.42 +0.1 227,133 - EX31_RS08600 0.42 +0.3 227,133 - EX31_RS08600 0.42 -0.7 227,133 - EX31_RS08600 0.42 +0.5 227,133 - EX31_RS08600 0.42 +0.5 227,133 - EX31_RS08600 0.42 +1.1 227,133 - EX31_RS08600 0.42 +0.0 227,133 - EX31_RS08600 0.42 +0.4 227,221 - EX31_RS08600 0.48 +0.5 227,222 + EX31_RS08600 0.48 +0.7 227,222 + EX31_RS08600 0.48 +1.4 227,222 + EX31_RS08600 0.48 -0.1 227,222 + EX31_RS08600 0.48 -0.0 227,222 + EX31_RS08600 0.48 +0.9 227,222 + EX31_RS08600 0.48 -0.4 227,222 + EX31_RS08600 0.48 +0.2 227,222 + EX31_RS08600 0.48 +0.2 227,222 + EX31_RS08600 0.48 -0.9 227,222 + EX31_RS08600 0.48 +0.1 227,222 + EX31_RS08600 0.48 +0.2 227,222 + EX31_RS08600 0.48 -0.4 227,222 + EX31_RS08600 0.48 +0.1 227,223 - EX31_RS08600 0.48 +0.4 227,223 - EX31_RS08600 0.48 +0.5 227,223 - EX31_RS08600 0.48 -0.5 227,223 - EX31_RS08600 0.48 +0.5 227,223 - EX31_RS08600 0.48 -0.8 227,223 - EX31_RS08600 0.48 +0.0 227,223 - EX31_RS08600 0.48 -0.0 227,223 - EX31_RS08600 0.48 +0.6 227,223 - EX31_RS08600 0.48 -0.2 227,223 - EX31_RS08600 0.48 -0.2 227,223 - EX31_RS08600 0.48 -0.2 227,223 - EX31_RS08600 0.48 -0.3 227,223 - EX31_RS08600 0.48 +0.2 227,223 - EX31_RS08600 0.48 -1.1
Or see this region's nucleotide sequence