Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07450 and EX31_RS07455 are separated by 13 nucleotides EX31_RS07455 and EX31_RS07460 are separated by 132 nucleotides EX31_RS07460 and EX31_RS07465 are separated by 105 nucleotides
EX31_RS07450: EX31_RS07450 - amino acid ABC transporter permease, at 302,672 to 303,337
_RS07450
EX31_RS07455: EX31_RS07455 - urea carboxylase-associated family protein, at 303,351 to 304,028
_RS07455
EX31_RS07460: EX31_RS07460 - NAD(P)-binding domain-containing protein, at 304,161 to 304,805
_RS07460
EX31_RS07465: EX31_RS07465 - LysR family transcriptional regulator, at 304,911 to 305,798
_RS07465
Position (kb)
304
305 Strain fitness (log2 ratio)
-2
-1
0
1 at 303.162 kb on + strand, within EX31_RS07450 at 303.162 kb on + strand, within EX31_RS07450 at 303.178 kb on + strand, within EX31_RS07450 at 303.178 kb on + strand, within EX31_RS07450 at 303.178 kb on + strand, within EX31_RS07450 at 303.178 kb on + strand, within EX31_RS07450 at 303.178 kb on + strand, within EX31_RS07450 at 303.179 kb on - strand, within EX31_RS07450 at 303.179 kb on - strand, within EX31_RS07450 at 303.182 kb on + strand, within EX31_RS07450 at 303.182 kb on + strand, within EX31_RS07450 at 303.182 kb on + strand, within EX31_RS07450 at 303.182 kb on + strand, within EX31_RS07450 at 303.230 kb on + strand, within EX31_RS07450 at 303.230 kb on + strand, within EX31_RS07450 at 303.230 kb on + strand, within EX31_RS07450 at 303.335 kb on + strand at 303.336 kb on - strand at 303.405 kb on - strand at 303.484 kb on - strand, within EX31_RS07455 at 303.507 kb on + strand, within EX31_RS07455 at 303.507 kb on + strand, within EX31_RS07455 at 303.507 kb on + strand, within EX31_RS07455 at 303.508 kb on - strand, within EX31_RS07455 at 303.508 kb on - strand, within EX31_RS07455 at 303.508 kb on - strand, within EX31_RS07455 at 303.508 kb on - strand, within EX31_RS07455 at 303.508 kb on - strand, within EX31_RS07455 at 303.509 kb on + strand, within EX31_RS07455 at 303.509 kb on + strand, within EX31_RS07455 at 303.509 kb on + strand, within EX31_RS07455 at 303.509 kb on + strand, within EX31_RS07455 at 303.509 kb on + strand, within EX31_RS07455 at 303.509 kb on + strand, within EX31_RS07455 at 303.510 kb on - strand, within EX31_RS07455 at 303.515 kb on + strand, within EX31_RS07455 at 303.515 kb on + strand, within EX31_RS07455 at 303.515 kb on + strand, within EX31_RS07455 at 303.515 kb on + strand, within EX31_RS07455 at 303.515 kb on + strand, within EX31_RS07455 at 303.516 kb on - strand, within EX31_RS07455 at 303.516 kb on - strand, within EX31_RS07455 at 303.853 kb on - strand, within EX31_RS07455 at 303.882 kb on + strand, within EX31_RS07455 at 303.882 kb on + strand, within EX31_RS07455 at 303.882 kb on + strand, within EX31_RS07455 at 303.883 kb on - strand, within EX31_RS07455 at 303.883 kb on - strand, within EX31_RS07455 at 303.883 kb on - strand, within EX31_RS07455 at 304.113 kb on - strand at 304.237 kb on + strand, within EX31_RS07460 at 304.238 kb on - strand, within EX31_RS07460 at 304.238 kb on - strand, within EX31_RS07460 at 304.315 kb on + strand, within EX31_RS07460 at 304.316 kb on - strand, within EX31_RS07460 at 304.540 kb on + strand, within EX31_RS07460 at 304.812 kb on + strand at 304.813 kb on - strand at 304.885 kb on - strand at 305.103 kb on + strand, within EX31_RS07465 at 305.103 kb on + strand, within EX31_RS07465 at 305.103 kb on + strand, within EX31_RS07465 at 305.104 kb on - strand, within EX31_RS07465 at 305.104 kb on - strand, within EX31_RS07465 at 305.104 kb on - strand, within EX31_RS07465 at 305.132 kb on - strand, within EX31_RS07465 at 305.132 kb on - strand, within EX31_RS07465 at 305.250 kb on + strand, within EX31_RS07465 at 305.251 kb on - strand, within EX31_RS07465 at 305.684 kb on - strand, within EX31_RS07465 at 305.686 kb on + strand, within EX31_RS07465 at 305.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 303,162 + EX31_RS07450 0.74 -0.3 303,162 + EX31_RS07450 0.74 +0.1 303,178 + EX31_RS07450 0.76 +0.1 303,178 + EX31_RS07450 0.76 +0.7 303,178 + EX31_RS07450 0.76 +0.3 303,178 + EX31_RS07450 0.76 +0.4 303,178 + EX31_RS07450 0.76 +0.5 303,179 - EX31_RS07450 0.76 +0.6 303,179 - EX31_RS07450 0.76 -0.0 303,182 + EX31_RS07450 0.77 -0.4 303,182 + EX31_RS07450 0.77 -0.0 303,182 + EX31_RS07450 0.77 +0.4 303,182 + EX31_RS07450 0.77 +1.0 303,230 + EX31_RS07450 0.84 -0.5 303,230 + EX31_RS07450 0.84 +0.4 303,230 + EX31_RS07450 0.84 -0.2 303,335 + -0.1 303,336 - +0.9 303,405 - -0.2 303,484 - EX31_RS07455 0.20 +0.1 303,507 + EX31_RS07455 0.23 -0.9 303,507 + EX31_RS07455 0.23 -0.5 303,507 + EX31_RS07455 0.23 -2.2 303,508 - EX31_RS07455 0.23 -0.2 303,508 - EX31_RS07455 0.23 +1.2 303,508 - EX31_RS07455 0.23 -0.1 303,508 - EX31_RS07455 0.23 -0.7 303,508 - EX31_RS07455 0.23 +0.8 303,509 + EX31_RS07455 0.23 +0.5 303,509 + EX31_RS07455 0.23 +0.1 303,509 + EX31_RS07455 0.23 +0.3 303,509 + EX31_RS07455 0.23 -1.2 303,509 + EX31_RS07455 0.23 +0.9 303,509 + EX31_RS07455 0.23 -0.2 303,510 - EX31_RS07455 0.23 -0.2 303,515 + EX31_RS07455 0.24 -0.6 303,515 + EX31_RS07455 0.24 -1.0 303,515 + EX31_RS07455 0.24 +1.0 303,515 + EX31_RS07455 0.24 -1.7 303,515 + EX31_RS07455 0.24 -1.0 303,516 - EX31_RS07455 0.24 +1.3 303,516 - EX31_RS07455 0.24 +0.0 303,853 - EX31_RS07455 0.74 +0.3 303,882 + EX31_RS07455 0.78 -0.8 303,882 + EX31_RS07455 0.78 -0.4 303,882 + EX31_RS07455 0.78 -0.4 303,883 - EX31_RS07455 0.78 -1.4 303,883 - EX31_RS07455 0.78 -1.0 303,883 - EX31_RS07455 0.78 +1.4 304,113 - -0.3 304,237 + EX31_RS07460 0.12 +0.1 304,238 - EX31_RS07460 0.12 -0.9 304,238 - EX31_RS07460 0.12 -1.8 304,315 + EX31_RS07460 0.24 -0.4 304,316 - EX31_RS07460 0.24 -0.3 304,540 + EX31_RS07460 0.59 -0.1 304,812 + +0.8 304,813 - -0.7 304,885 - +0.8 305,103 + EX31_RS07465 0.22 +1.4 305,103 + EX31_RS07465 0.22 +0.5 305,103 + EX31_RS07465 0.22 -0.6 305,104 - EX31_RS07465 0.22 -1.3 305,104 - EX31_RS07465 0.22 -0.2 305,104 - EX31_RS07465 0.22 +0.0 305,132 - EX31_RS07465 0.25 -0.5 305,132 - EX31_RS07465 0.25 -0.0 305,250 + EX31_RS07465 0.38 +0.2 305,251 - EX31_RS07465 0.38 +0.3 305,684 - EX31_RS07465 0.87 +0.3 305,686 + EX31_RS07465 0.87 -0.5 305,720 + +0.2
Or see this region's nucleotide sequence