Strain Fitness in Rahnella sp. WP5 around EX31_RS07460

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07450 and EX31_RS07455 are separated by 13 nucleotidesEX31_RS07455 and EX31_RS07460 are separated by 132 nucleotidesEX31_RS07460 and EX31_RS07465 are separated by 105 nucleotides EX31_RS07450: EX31_RS07450 - amino acid ABC transporter permease, at 302,672 to 303,337 _RS07450 EX31_RS07455: EX31_RS07455 - urea carboxylase-associated family protein, at 303,351 to 304,028 _RS07455 EX31_RS07460: EX31_RS07460 - NAD(P)-binding domain-containing protein, at 304,161 to 304,805 _RS07460 EX31_RS07465: EX31_RS07465 - LysR family transcriptional regulator, at 304,911 to 305,798 _RS07465 Position (kb) 304 305Strain fitness (log2 ratio) -2 -1 0 1at 303.162 kb on + strand, within EX31_RS07450at 303.162 kb on + strand, within EX31_RS07450at 303.178 kb on + strand, within EX31_RS07450at 303.178 kb on + strand, within EX31_RS07450at 303.178 kb on + strand, within EX31_RS07450at 303.178 kb on + strand, within EX31_RS07450at 303.178 kb on + strand, within EX31_RS07450at 303.179 kb on - strand, within EX31_RS07450at 303.179 kb on - strand, within EX31_RS07450at 303.182 kb on + strand, within EX31_RS07450at 303.182 kb on + strand, within EX31_RS07450at 303.182 kb on + strand, within EX31_RS07450at 303.182 kb on + strand, within EX31_RS07450at 303.230 kb on + strand, within EX31_RS07450at 303.230 kb on + strand, within EX31_RS07450at 303.230 kb on + strand, within EX31_RS07450at 303.335 kb on + strandat 303.336 kb on - strandat 303.405 kb on - strandat 303.484 kb on - strand, within EX31_RS07455at 303.507 kb on + strand, within EX31_RS07455at 303.507 kb on + strand, within EX31_RS07455at 303.507 kb on + strand, within EX31_RS07455at 303.508 kb on - strand, within EX31_RS07455at 303.508 kb on - strand, within EX31_RS07455at 303.508 kb on - strand, within EX31_RS07455at 303.508 kb on - strand, within EX31_RS07455at 303.508 kb on - strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.509 kb on + strand, within EX31_RS07455at 303.510 kb on - strand, within EX31_RS07455at 303.515 kb on + strand, within EX31_RS07455at 303.515 kb on + strand, within EX31_RS07455at 303.515 kb on + strand, within EX31_RS07455at 303.515 kb on + strand, within EX31_RS07455at 303.515 kb on + strand, within EX31_RS07455at 303.516 kb on - strand, within EX31_RS07455at 303.516 kb on - strand, within EX31_RS07455at 303.853 kb on - strand, within EX31_RS07455at 303.882 kb on + strand, within EX31_RS07455at 303.882 kb on + strand, within EX31_RS07455at 303.882 kb on + strand, within EX31_RS07455at 303.883 kb on - strand, within EX31_RS07455at 303.883 kb on - strand, within EX31_RS07455at 303.883 kb on - strand, within EX31_RS07455at 304.113 kb on - strandat 304.237 kb on + strand, within EX31_RS07460at 304.238 kb on - strand, within EX31_RS07460at 304.238 kb on - strand, within EX31_RS07460at 304.315 kb on + strand, within EX31_RS07460at 304.316 kb on - strand, within EX31_RS07460at 304.540 kb on + strand, within EX31_RS07460at 304.812 kb on + strandat 304.813 kb on - strandat 304.885 kb on - strandat 305.103 kb on + strand, within EX31_RS07465at 305.103 kb on + strand, within EX31_RS07465at 305.103 kb on + strand, within EX31_RS07465at 305.104 kb on - strand, within EX31_RS07465at 305.104 kb on - strand, within EX31_RS07465at 305.104 kb on - strand, within EX31_RS07465at 305.132 kb on - strand, within EX31_RS07465at 305.132 kb on - strand, within EX31_RS07465at 305.250 kb on + strand, within EX31_RS07465at 305.251 kb on - strand, within EX31_RS07465at 305.684 kb on - strand, within EX31_RS07465at 305.686 kb on + strand, within EX31_RS07465at 305.720 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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303,162 + EX31_RS07450 0.74 -0.3
303,162 + EX31_RS07450 0.74 +0.1
303,178 + EX31_RS07450 0.76 +0.1
303,178 + EX31_RS07450 0.76 +0.7
303,178 + EX31_RS07450 0.76 +0.3
303,178 + EX31_RS07450 0.76 +0.4
303,178 + EX31_RS07450 0.76 +0.5
303,179 - EX31_RS07450 0.76 +0.6
303,179 - EX31_RS07450 0.76 -0.0
303,182 + EX31_RS07450 0.77 -0.4
303,182 + EX31_RS07450 0.77 -0.0
303,182 + EX31_RS07450 0.77 +0.4
303,182 + EX31_RS07450 0.77 +1.0
303,230 + EX31_RS07450 0.84 -0.5
303,230 + EX31_RS07450 0.84 +0.4
303,230 + EX31_RS07450 0.84 -0.2
303,335 + -0.1
303,336 - +0.9
303,405 - -0.2
303,484 - EX31_RS07455 0.20 +0.1
303,507 + EX31_RS07455 0.23 -0.9
303,507 + EX31_RS07455 0.23 -0.5
303,507 + EX31_RS07455 0.23 -2.2
303,508 - EX31_RS07455 0.23 -0.2
303,508 - EX31_RS07455 0.23 +1.2
303,508 - EX31_RS07455 0.23 -0.1
303,508 - EX31_RS07455 0.23 -0.7
303,508 - EX31_RS07455 0.23 +0.8
303,509 + EX31_RS07455 0.23 +0.5
303,509 + EX31_RS07455 0.23 +0.1
303,509 + EX31_RS07455 0.23 +0.3
303,509 + EX31_RS07455 0.23 -1.2
303,509 + EX31_RS07455 0.23 +0.9
303,509 + EX31_RS07455 0.23 -0.2
303,510 - EX31_RS07455 0.23 -0.2
303,515 + EX31_RS07455 0.24 -0.6
303,515 + EX31_RS07455 0.24 -1.0
303,515 + EX31_RS07455 0.24 +1.0
303,515 + EX31_RS07455 0.24 -1.7
303,515 + EX31_RS07455 0.24 -1.0
303,516 - EX31_RS07455 0.24 +1.3
303,516 - EX31_RS07455 0.24 +0.0
303,853 - EX31_RS07455 0.74 +0.3
303,882 + EX31_RS07455 0.78 -0.8
303,882 + EX31_RS07455 0.78 -0.4
303,882 + EX31_RS07455 0.78 -0.4
303,883 - EX31_RS07455 0.78 -1.4
303,883 - EX31_RS07455 0.78 -1.0
303,883 - EX31_RS07455 0.78 +1.4
304,113 - -0.3
304,237 + EX31_RS07460 0.12 +0.1
304,238 - EX31_RS07460 0.12 -0.9
304,238 - EX31_RS07460 0.12 -1.8
304,315 + EX31_RS07460 0.24 -0.4
304,316 - EX31_RS07460 0.24 -0.3
304,540 + EX31_RS07460 0.59 -0.1
304,812 + +0.8
304,813 - -0.7
304,885 - +0.8
305,103 + EX31_RS07465 0.22 +1.4
305,103 + EX31_RS07465 0.22 +0.5
305,103 + EX31_RS07465 0.22 -0.6
305,104 - EX31_RS07465 0.22 -1.3
305,104 - EX31_RS07465 0.22 -0.2
305,104 - EX31_RS07465 0.22 +0.0
305,132 - EX31_RS07465 0.25 -0.5
305,132 - EX31_RS07465 0.25 -0.0
305,250 + EX31_RS07465 0.38 +0.2
305,251 - EX31_RS07465 0.38 +0.3
305,684 - EX31_RS07465 0.87 +0.3
305,686 + EX31_RS07465 0.87 -0.5
305,720 + +0.2

Or see this region's nucleotide sequence