Strain Fitness in Rahnella sp. WP5 around EX31_RS07225

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07220 and EX31_RS07225 are separated by 230 nucleotidesEX31_RS07225 and EX31_RS07230 are separated by 250 nucleotides EX31_RS07220: EX31_RS07220 - DUF1471 domain-containing protein, at 243,010 to 243,963 _RS07220 EX31_RS07225: EX31_RS07225 - membrane dipeptidase, at 244,194 to 245,306 _RS07225 EX31_RS07230: EX31_RS07230 - ABC transporter substrate-binding protein, at 245,557 to 247,152 _RS07230 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2at 243.212 kb on - strand, within EX31_RS07220at 243.241 kb on - strand, within EX31_RS07220at 243.263 kb on + strand, within EX31_RS07220at 243.277 kb on + strand, within EX31_RS07220at 243.277 kb on + strand, within EX31_RS07220at 243.277 kb on + strand, within EX31_RS07220at 243.349 kb on - strand, within EX31_RS07220at 243.435 kb on + strand, within EX31_RS07220at 243.463 kb on + strand, within EX31_RS07220at 243.514 kb on + strand, within EX31_RS07220at 243.514 kb on + strand, within EX31_RS07220at 243.532 kb on + strand, within EX31_RS07220at 243.532 kb on + strand, within EX31_RS07220at 243.534 kb on + strand, within EX31_RS07220at 243.534 kb on + strand, within EX31_RS07220at 243.773 kb on + strand, within EX31_RS07220at 243.776 kb on + strand, within EX31_RS07220at 243.776 kb on + strand, within EX31_RS07220at 243.776 kb on + strand, within EX31_RS07220at 243.892 kb on + strandat 243.892 kb on + strandat 243.941 kb on + strandat 243.961 kb on + strandat 243.961 kb on + strandat 244.145 kb on + strandat 244.208 kb on + strandat 244.410 kb on + strand, within EX31_RS07225at 244.410 kb on + strand, within EX31_RS07225at 244.411 kb on - strand, within EX31_RS07225at 244.411 kb on - strand, within EX31_RS07225at 244.415 kb on + strand, within EX31_RS07225at 244.536 kb on - strand, within EX31_RS07225at 244.536 kb on - strand, within EX31_RS07225at 244.553 kb on + strand, within EX31_RS07225at 244.554 kb on - strand, within EX31_RS07225at 244.804 kb on + strand, within EX31_RS07225at 244.805 kb on - strand, within EX31_RS07225at 244.805 kb on - strand, within EX31_RS07225at 244.856 kb on + strand, within EX31_RS07225at 244.873 kb on - strand, within EX31_RS07225at 244.883 kb on + strand, within EX31_RS07225at 245.085 kb on - strand, within EX31_RS07225at 245.252 kb on + strandat 245.307 kb on - strandat 245.327 kb on + strandat 245.328 kb on - strandat 245.409 kb on + strandat 245.409 kb on + strandat 245.409 kb on + strandat 245.409 kb on + strandat 245.491 kb on + strandat 245.492 kb on - strandat 245.654 kb on + strandat 245.655 kb on - strandat 245.742 kb on + strand, within EX31_RS07230at 245.743 kb on - strand, within EX31_RS07230at 245.746 kb on + strand, within EX31_RS07230at 245.747 kb on - strand, within EX31_RS07230at 245.747 kb on - strand, within EX31_RS07230at 245.951 kb on - strand, within EX31_RS07230at 245.955 kb on + strand, within EX31_RS07230at 245.956 kb on - strand, within EX31_RS07230at 245.956 kb on - strand, within EX31_RS07230at 245.958 kb on + strand, within EX31_RS07230at 246.067 kb on + strand, within EX31_RS07230at 246.094 kb on - strand, within EX31_RS07230at 246.286 kb on - strand, within EX31_RS07230

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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243,212 - EX31_RS07220 0.21 -0.8
243,241 - EX31_RS07220 0.24 +0.2
243,263 + EX31_RS07220 0.27 +0.2
243,277 + EX31_RS07220 0.28 -1.6
243,277 + EX31_RS07220 0.28 +0.2
243,277 + EX31_RS07220 0.28 +0.6
243,349 - EX31_RS07220 0.36 -0.2
243,435 + EX31_RS07220 0.45 +2.0
243,463 + EX31_RS07220 0.47 +0.1
243,514 + EX31_RS07220 0.53 -0.3
243,514 + EX31_RS07220 0.53 -0.5
243,532 + EX31_RS07220 0.55 -0.8
243,532 + EX31_RS07220 0.55 -1.2
243,534 + EX31_RS07220 0.55 +0.0
243,534 + EX31_RS07220 0.55 +0.4
243,773 + EX31_RS07220 0.80 -0.5
243,776 + EX31_RS07220 0.80 +0.0
243,776 + EX31_RS07220 0.80 +1.0
243,776 + EX31_RS07220 0.80 +0.5
243,892 + -0.7
243,892 + +1.4
243,941 + -0.2
243,961 + +0.7
243,961 + +0.5
244,145 + -0.6
244,208 + +2.1
244,410 + EX31_RS07225 0.19 -0.0
244,410 + EX31_RS07225 0.19 +0.2
244,411 - EX31_RS07225 0.19 +0.0
244,411 - EX31_RS07225 0.19 +0.3
244,415 + EX31_RS07225 0.20 -0.6
244,536 - EX31_RS07225 0.31 -0.3
244,536 - EX31_RS07225 0.31 -0.9
244,553 + EX31_RS07225 0.32 -0.8
244,554 - EX31_RS07225 0.32 -0.9
244,804 + EX31_RS07225 0.55 -0.8
244,805 - EX31_RS07225 0.55 -0.4
244,805 - EX31_RS07225 0.55 -1.5
244,856 + EX31_RS07225 0.59 -1.5
244,873 - EX31_RS07225 0.61 +0.8
244,883 + EX31_RS07225 0.62 -0.8
245,085 - EX31_RS07225 0.80 -0.6
245,252 + +0.3
245,307 - -0.2
245,327 + -0.6
245,328 - -1.6
245,409 + +1.0
245,409 + +0.6
245,409 + +0.9
245,409 + +0.3
245,491 + -0.0
245,492 - -0.8
245,654 + -1.4
245,655 - +0.1
245,742 + EX31_RS07230 0.12 -1.0
245,743 - EX31_RS07230 0.12 +0.9
245,746 + EX31_RS07230 0.12 +0.1
245,747 - EX31_RS07230 0.12 +0.7
245,747 - EX31_RS07230 0.12 +0.4
245,951 - EX31_RS07230 0.25 -0.7
245,955 + EX31_RS07230 0.25 -0.1
245,956 - EX31_RS07230 0.25 +0.4
245,956 - EX31_RS07230 0.25 -0.2
245,958 + EX31_RS07230 0.25 -0.7
246,067 + EX31_RS07230 0.32 +1.3
246,094 - EX31_RS07230 0.34 +0.4
246,286 - EX31_RS07230 0.46 -2.5

Or see this region's nucleotide sequence