Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07195 and EX31_RS07200 are separated by 441 nucleotides EX31_RS07200 and EX31_RS07205 are separated by 135 nucleotides
EX31_RS07195: EX31_RS07195 - TerC/Alx family metal homeostasis membrane protein, at 236,157 to 237,182
_RS07195
EX31_RS07200: EX31_RS07200 - FNR family transcription factor, at 237,624 to 238,379
_RS07200
EX31_RS07205: EX31_RS07205 - universal stress protein UspE, at 238,515 to 239,474
_RS07205
Position (kb) 237
238
239 Strain fitness (log2 ratio) -2
-1
0
1
2 at 236.664 kb on + strand, within EX31_RS07195 at 236.664 kb on + strand, within EX31_RS07195 at 236.664 kb on + strand, within EX31_RS07195 at 236.665 kb on - strand, within EX31_RS07195 at 236.665 kb on - strand, within EX31_RS07195 at 236.681 kb on + strand, within EX31_RS07195 at 236.682 kb on - strand, within EX31_RS07195 at 236.692 kb on + strand, within EX31_RS07195 at 236.693 kb on - strand, within EX31_RS07195 at 236.891 kb on + strand, within EX31_RS07195 at 236.999 kb on + strand, within EX31_RS07195 at 236.999 kb on + strand, within EX31_RS07195 at 237.000 kb on - strand, within EX31_RS07195 at 237.001 kb on + strand, within EX31_RS07195 at 237.002 kb on - strand, within EX31_RS07195 at 237.002 kb on - strand, within EX31_RS07195 at 237.003 kb on + strand, within EX31_RS07195 at 237.003 kb on + strand, within EX31_RS07195 at 237.003 kb on + strand, within EX31_RS07195 at 237.003 kb on + strand, within EX31_RS07195 at 237.003 kb on + strand, within EX31_RS07195 at 237.004 kb on - strand, within EX31_RS07195 at 237.004 kb on - strand, within EX31_RS07195 at 237.004 kb on - strand, within EX31_RS07195 at 237.004 kb on - strand, within EX31_RS07195 at 237.004 kb on - strand, within EX31_RS07195 at 237.043 kb on - strand, within EX31_RS07195 at 237.126 kb on + strand at 237.127 kb on - strand at 237.183 kb on + strand at 237.184 kb on - strand at 237.184 kb on - strand at 237.184 kb on - strand at 237.279 kb on + strand at 237.356 kb on + strand at 237.376 kb on + strand at 237.376 kb on + strand at 237.377 kb on - strand at 237.546 kb on + strand at 237.547 kb on - strand at 237.554 kb on + strand at 237.554 kb on + strand at 237.554 kb on + strand at 237.554 kb on + strand at 237.554 kb on + strand at 237.555 kb on - strand at 237.555 kb on - strand at 237.555 kb on - strand at 237.555 kb on - strand at 237.555 kb on - strand at 237.556 kb on + strand at 237.556 kb on + strand at 237.557 kb on - strand at 237.557 kb on - strand at 237.557 kb on - strand at 237.560 kb on + strand at 237.560 kb on + strand at 237.561 kb on - strand at 237.561 kb on - strand at 237.565 kb on - strand at 237.623 kb on + strand at 237.623 kb on + strand at 237.653 kb on + strand at 237.692 kb on + strand at 237.692 kb on + strand at 237.692 kb on + strand at 237.710 kb on + strand, within EX31_RS07200 at 237.748 kb on + strand, within EX31_RS07200 at 237.800 kb on + strand, within EX31_RS07200 at 237.826 kb on + strand, within EX31_RS07200 at 237.826 kb on + strand, within EX31_RS07200 at 237.826 kb on + strand, within EX31_RS07200 at 237.826 kb on + strand, within EX31_RS07200 at 237.826 kb on + strand, within EX31_RS07200 at 237.826 kb on + strand, within EX31_RS07200 at 237.826 kb on + strand, within EX31_RS07200 at 237.828 kb on + strand, within EX31_RS07200 at 237.828 kb on + strand, within EX31_RS07200 at 237.943 kb on + strand, within EX31_RS07200 at 237.943 kb on + strand, within EX31_RS07200 at 237.943 kb on + strand, within EX31_RS07200 at 237.980 kb on + strand, within EX31_RS07200 at 237.980 kb on + strand, within EX31_RS07200 at 237.980 kb on + strand, within EX31_RS07200 at 238.075 kb on + strand, within EX31_RS07200 at 238.075 kb on + strand, within EX31_RS07200 at 238.075 kb on + strand, within EX31_RS07200 at 238.075 kb on + strand, within EX31_RS07200 at 238.091 kb on + strand, within EX31_RS07200 at 238.091 kb on + strand, within EX31_RS07200 at 238.146 kb on + strand, within EX31_RS07200 at 238.146 kb on + strand, within EX31_RS07200 at 238.226 kb on + strand, within EX31_RS07200 at 238.226 kb on + strand, within EX31_RS07200 at 238.230 kb on + strand, within EX31_RS07200 at 238.230 kb on + strand, within EX31_RS07200 at 238.264 kb on + strand, within EX31_RS07200 at 238.300 kb on + strand, within EX31_RS07200 at 238.300 kb on + strand, within EX31_RS07200 at 238.300 kb on + strand, within EX31_RS07200 at 238.311 kb on + strand at 238.311 kb on + strand at 238.311 kb on + strand at 238.311 kb on + strand at 238.311 kb on + strand at 238.311 kb on + strand at 238.311 kb on + strand at 238.312 kb on - strand at 238.471 kb on + strand at 238.472 kb on - strand at 238.474 kb on + strand at 238.474 kb on + strand at 238.474 kb on + strand at 238.494 kb on + strand at 238.525 kb on - strand at 238.545 kb on - strand at 238.546 kb on + strand at 238.604 kb on + strand at 238.651 kb on - strand, within EX31_RS07205 at 238.749 kb on + strand, within EX31_RS07205 at 238.915 kb on + strand, within EX31_RS07205 at 238.915 kb on + strand, within EX31_RS07205 at 238.948 kb on + strand, within EX31_RS07205 at 239.161 kb on + strand, within EX31_RS07205 at 239.161 kb on + strand, within EX31_RS07205 at 239.161 kb on + strand, within EX31_RS07205 at 239.161 kb on + strand, within EX31_RS07205 at 239.161 kb on + strand, within EX31_RS07205 at 239.161 kb on + strand, within EX31_RS07205 at 239.162 kb on - strand, within EX31_RS07205 at 239.163 kb on + strand, within EX31_RS07205 at 239.163 kb on + strand, within EX31_RS07205 at 239.164 kb on - strand, within EX31_RS07205 at 239.165 kb on + strand, within EX31_RS07205 at 239.165 kb on + strand, within EX31_RS07205 at 239.166 kb on - strand, within EX31_RS07205 at 239.166 kb on - strand, within EX31_RS07205 at 239.166 kb on - strand, within EX31_RS07205 at 239.241 kb on - strand, within EX31_RS07205 at 239.241 kb on - strand, within EX31_RS07205
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 236,664 + EX31_RS07195 0.49 +0.3 236,664 + EX31_RS07195 0.49 +0.2 236,664 + EX31_RS07195 0.49 +0.8 236,665 - EX31_RS07195 0.50 -0.3 236,665 - EX31_RS07195 0.50 -0.6 236,681 + EX31_RS07195 0.51 -1.7 236,682 - EX31_RS07195 0.51 -0.7 236,692 + EX31_RS07195 0.52 -0.7 236,693 - EX31_RS07195 0.52 -1.4 236,891 + EX31_RS07195 0.72 -0.5 236,999 + EX31_RS07195 0.82 +0.6 236,999 + EX31_RS07195 0.82 -1.0 237,000 - EX31_RS07195 0.82 +0.5 237,001 + EX31_RS07195 0.82 +0.5 237,002 - EX31_RS07195 0.82 +1.5 237,002 - EX31_RS07195 0.82 +0.8 237,003 + EX31_RS07195 0.82 +1.1 237,003 + EX31_RS07195 0.82 +0.3 237,003 + EX31_RS07195 0.82 -1.4 237,003 + EX31_RS07195 0.82 -0.4 237,003 + EX31_RS07195 0.82 +1.6 237,004 - EX31_RS07195 0.83 -0.9 237,004 - EX31_RS07195 0.83 +0.2 237,004 - EX31_RS07195 0.83 -0.6 237,004 - EX31_RS07195 0.83 +0.7 237,004 - EX31_RS07195 0.83 -0.1 237,043 - EX31_RS07195 0.86 -0.4 237,126 + +0.8 237,127 - -1.1 237,183 + +0.4 237,184 - +0.6 237,184 - +0.9 237,184 - +1.7 237,279 + -0.2 237,356 + +0.5 237,376 + -1.5 237,376 + +0.7 237,377 - -0.7 237,546 + -0.2 237,547 - +0.1 237,554 + -1.0 237,554 + +0.9 237,554 + -0.6 237,554 + +1.9 237,554 + +0.2 237,555 - -0.6 237,555 - -0.2 237,555 - +0.2 237,555 - -1.3 237,555 - +0.3 237,556 + +0.4 237,556 + -0.8 237,557 - +0.7 237,557 - +0.1 237,557 - +1.4 237,560 + +1.2 237,560 + -0.5 237,561 - +0.6 237,561 - -0.3 237,565 - +0.2 237,623 + +0.1 237,623 + +1.0 237,653 + -0.2 237,692 + +0.5 237,692 + -0.3 237,692 + -0.8 237,710 + EX31_RS07200 0.11 -0.3 237,748 + EX31_RS07200 0.16 -2.2 237,800 + EX31_RS07200 0.23 +0.1 237,826 + EX31_RS07200 0.27 +0.8 237,826 + EX31_RS07200 0.27 -0.6 237,826 + EX31_RS07200 0.27 +0.3 237,826 + EX31_RS07200 0.27 -1.2 237,826 + EX31_RS07200 0.27 -0.5 237,826 + EX31_RS07200 0.27 -0.5 237,826 + EX31_RS07200 0.27 -0.9 237,828 + EX31_RS07200 0.27 -0.7 237,828 + EX31_RS07200 0.27 -0.5 237,943 + EX31_RS07200 0.42 +0.3 237,943 + EX31_RS07200 0.42 -0.6 237,943 + EX31_RS07200 0.42 -0.5 237,980 + EX31_RS07200 0.47 +0.3 237,980 + EX31_RS07200 0.47 +0.3 237,980 + EX31_RS07200 0.47 -0.7 238,075 + EX31_RS07200 0.60 -0.9 238,075 + EX31_RS07200 0.60 -0.3 238,075 + EX31_RS07200 0.60 +0.5 238,075 + EX31_RS07200 0.60 -0.9 238,091 + EX31_RS07200 0.62 +0.1 238,091 + EX31_RS07200 0.62 -1.0 238,146 + EX31_RS07200 0.69 -0.0 238,146 + EX31_RS07200 0.69 -1.5 238,226 + EX31_RS07200 0.80 -0.5 238,226 + EX31_RS07200 0.80 -0.2 238,230 + EX31_RS07200 0.80 -0.4 238,230 + EX31_RS07200 0.80 +1.0 238,264 + EX31_RS07200 0.85 -0.1 238,300 + EX31_RS07200 0.89 -0.1 238,300 + EX31_RS07200 0.89 -0.4 238,300 + EX31_RS07200 0.89 -0.4 238,311 + -1.3 238,311 + +0.3 238,311 + -1.0 238,311 + -0.2 238,311 + -0.9 238,311 + -0.3 238,311 + -1.6 238,312 - -1.2 238,471 + +0.2 238,472 - +0.6 238,474 + +0.0 238,474 + -0.8 238,474 + -0.6 238,494 + +0.2 238,525 - +0.2 238,545 - -0.3 238,546 + -1.2 238,604 + +0.7 238,651 - EX31_RS07205 0.14 +0.8 238,749 + EX31_RS07205 0.24 -1.9 238,915 + EX31_RS07205 0.42 -0.7 238,915 + EX31_RS07205 0.42 +0.1 238,948 + EX31_RS07205 0.45 +1.0 239,161 + EX31_RS07205 0.67 +1.3 239,161 + EX31_RS07205 0.67 -0.9 239,161 + EX31_RS07205 0.67 +1.0 239,161 + EX31_RS07205 0.67 -0.0 239,161 + EX31_RS07205 0.67 -0.9 239,161 + EX31_RS07205 0.67 +0.6 239,162 - EX31_RS07205 0.67 -0.3 239,163 + EX31_RS07205 0.68 -1.0 239,163 + EX31_RS07205 0.68 -0.9 239,164 - EX31_RS07205 0.68 +0.3 239,165 + EX31_RS07205 0.68 -0.3 239,165 + EX31_RS07205 0.68 +0.3 239,166 - EX31_RS07205 0.68 +0.0 239,166 - EX31_RS07205 0.68 -0.9 239,166 - EX31_RS07205 0.68 -0.9 239,241 - EX31_RS07205 0.76 -0.5 239,241 - EX31_RS07205 0.76 +0.1
Or see this region's nucleotide sequence