Strain Fitness in Rahnella sp. WP5 around EX31_RS07050

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07045 and EX31_RS07050 are separated by 60 nucleotidesEX31_RS07050 and EX31_RS07055 overlap by 4 nucleotidesEX31_RS07055 and EX31_RS07060 are separated by 26 nucleotides EX31_RS07045: EX31_RS07045 - extracellular solute-binding protein, at 202,081 to 203,331 _RS07045 EX31_RS07050: EX31_RS07050 - sugar ABC transporter permease, at 203,392 to 204,294 _RS07050 EX31_RS07055: EX31_RS07055 - carbohydrate ABC transporter permease, at 204,291 to 205,130 _RS07055 EX31_RS07060: EX31_RS07060 - carbohydrate kinase family protein, at 205,157 to 206,110 _RS07060 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1at 202.479 kb on + strand, within EX31_RS07045at 202.517 kb on - strand, within EX31_RS07045at 202.522 kb on + strand, within EX31_RS07045at 202.523 kb on - strand, within EX31_RS07045at 202.678 kb on + strand, within EX31_RS07045at 202.678 kb on + strand, within EX31_RS07045at 202.678 kb on + strand, within EX31_RS07045at 202.679 kb on - strand, within EX31_RS07045at 202.768 kb on + strand, within EX31_RS07045at 202.768 kb on + strand, within EX31_RS07045at 202.768 kb on + strand, within EX31_RS07045at 202.789 kb on - strand, within EX31_RS07045at 202.839 kb on + strand, within EX31_RS07045at 202.839 kb on + strand, within EX31_RS07045at 202.839 kb on + strand, within EX31_RS07045at 202.840 kb on - strand, within EX31_RS07045at 202.885 kb on + strand, within EX31_RS07045at 202.885 kb on + strand, within EX31_RS07045at 202.886 kb on - strand, within EX31_RS07045at 202.886 kb on - strand, within EX31_RS07045at 202.886 kb on - strand, within EX31_RS07045at 202.891 kb on + strand, within EX31_RS07045at 202.891 kb on + strand, within EX31_RS07045at 202.891 kb on + strand, within EX31_RS07045at 203.047 kb on + strand, within EX31_RS07045at 203.047 kb on + strand, within EX31_RS07045at 203.047 kb on + strand, within EX31_RS07045at 203.048 kb on - strand, within EX31_RS07045at 203.056 kb on + strand, within EX31_RS07045at 203.057 kb on - strand, within EX31_RS07045at 203.057 kb on - strand, within EX31_RS07045at 203.087 kb on - strand, within EX31_RS07045at 203.087 kb on - strand, within EX31_RS07045at 203.122 kb on + strand, within EX31_RS07045at 203.122 kb on + strand, within EX31_RS07045at 203.123 kb on - strand, within EX31_RS07045at 203.209 kb on - strandat 203.272 kb on - strandat 203.348 kb on + strandat 203.348 kb on + strandat 203.348 kb on + strandat 203.348 kb on + strandat 203.348 kb on + strandat 203.350 kb on + strandat 203.350 kb on + strandat 203.350 kb on + strandat 203.350 kb on + strandat 203.350 kb on + strandat 203.351 kb on - strandat 203.351 kb on - strandat 203.351 kb on - strandat 203.353 kb on + strandat 203.572 kb on + strand, within EX31_RS07050at 203.572 kb on + strand, within EX31_RS07050at 203.803 kb on - strand, within EX31_RS07050at 203.896 kb on - strand, within EX31_RS07050at 203.908 kb on + strand, within EX31_RS07050at 203.964 kb on - strand, within EX31_RS07050at 204.100 kb on + strand, within EX31_RS07050at 204.100 kb on + strand, within EX31_RS07050at 204.101 kb on - strand, within EX31_RS07050at 204.101 kb on - strand, within EX31_RS07050at 204.176 kb on - strand, within EX31_RS07050at 204.247 kb on + strandat 204.247 kb on + strandat 204.247 kb on + strandat 204.247 kb on + strandat 204.248 kb on - strandat 204.260 kb on + strandat 204.261 kb on - strandat 204.261 kb on - strandat 204.261 kb on - strandat 204.261 kb on - strandat 204.317 kb on - strandat 204.459 kb on - strand, within EX31_RS07055at 204.476 kb on - strand, within EX31_RS07055at 204.476 kb on - strand, within EX31_RS07055at 204.584 kb on + strand, within EX31_RS07055at 204.584 kb on + strand, within EX31_RS07055at 204.639 kb on + strand, within EX31_RS07055at 204.675 kb on + strand, within EX31_RS07055at 204.676 kb on - strand, within EX31_RS07055at 204.733 kb on - strand, within EX31_RS07055at 204.733 kb on - strand, within EX31_RS07055at 204.844 kb on + strand, within EX31_RS07055at 204.845 kb on - strand, within EX31_RS07055at 205.190 kb on + strandat 205.191 kb on - strandat 205.191 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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202,479 + EX31_RS07045 0.32 +0.3
202,517 - EX31_RS07045 0.35 +0.8
202,522 + EX31_RS07045 0.35 +1.0
202,523 - EX31_RS07045 0.35 +1.0
202,678 + EX31_RS07045 0.48 +0.2
202,678 + EX31_RS07045 0.48 -0.1
202,678 + EX31_RS07045 0.48 -0.3
202,679 - EX31_RS07045 0.48 -1.7
202,768 + EX31_RS07045 0.55 +1.4
202,768 + EX31_RS07045 0.55 +0.2
202,768 + EX31_RS07045 0.55 +0.2
202,789 - EX31_RS07045 0.57 -0.2
202,839 + EX31_RS07045 0.61 -1.0
202,839 + EX31_RS07045 0.61 -0.6
202,839 + EX31_RS07045 0.61 +0.5
202,840 - EX31_RS07045 0.61 +1.4
202,885 + EX31_RS07045 0.64 -0.8
202,885 + EX31_RS07045 0.64 +0.8
202,886 - EX31_RS07045 0.64 -1.5
202,886 - EX31_RS07045 0.64 -0.8
202,886 - EX31_RS07045 0.64 +0.3
202,891 + EX31_RS07045 0.65 -0.3
202,891 + EX31_RS07045 0.65 +0.2
202,891 + EX31_RS07045 0.65 +0.6
203,047 + EX31_RS07045 0.77 +0.3
203,047 + EX31_RS07045 0.77 -1.2
203,047 + EX31_RS07045 0.77 +0.2
203,048 - EX31_RS07045 0.77 -1.4
203,056 + EX31_RS07045 0.78 +0.2
203,057 - EX31_RS07045 0.78 -0.3
203,057 - EX31_RS07045 0.78 +0.3
203,087 - EX31_RS07045 0.80 -0.0
203,087 - EX31_RS07045 0.80 -2.0
203,122 + EX31_RS07045 0.83 +0.0
203,122 + EX31_RS07045 0.83 -2.6
203,123 - EX31_RS07045 0.83 +0.8
203,209 - +0.2
203,272 - -0.3
203,348 + +1.0
203,348 + +0.0
203,348 + -1.2
203,348 + -0.7
203,348 + -0.5
203,350 + -0.4
203,350 + -1.2
203,350 + +1.1
203,350 + -1.7
203,350 + -0.5
203,351 - -0.4
203,351 - -0.9
203,351 - -0.6
203,353 + +0.6
203,572 + EX31_RS07050 0.20 -0.4
203,572 + EX31_RS07050 0.20 -1.0
203,803 - EX31_RS07050 0.46 +0.3
203,896 - EX31_RS07050 0.56 +0.2
203,908 + EX31_RS07050 0.57 -1.0
203,964 - EX31_RS07050 0.63 +0.1
204,100 + EX31_RS07050 0.78 -0.9
204,100 + EX31_RS07050 0.78 +0.7
204,101 - EX31_RS07050 0.79 -1.5
204,101 - EX31_RS07050 0.79 -0.4
204,176 - EX31_RS07050 0.87 -1.6
204,247 + -1.5
204,247 + +0.4
204,247 + -1.1
204,247 + +1.2
204,248 - +0.6
204,260 + +0.6
204,261 - +0.7
204,261 - -0.5
204,261 - +0.7
204,261 - +0.8
204,317 - +0.5
204,459 - EX31_RS07055 0.20 +0.6
204,476 - EX31_RS07055 0.22 +0.0
204,476 - EX31_RS07055 0.22 -1.7
204,584 + EX31_RS07055 0.35 +0.5
204,584 + EX31_RS07055 0.35 +0.7
204,639 + EX31_RS07055 0.41 +0.6
204,675 + EX31_RS07055 0.46 -0.4
204,676 - EX31_RS07055 0.46 +0.5
204,733 - EX31_RS07055 0.53 +0.4
204,733 - EX31_RS07055 0.53 -0.9
204,844 + EX31_RS07055 0.66 +0.1
204,845 - EX31_RS07055 0.66 -0.1
205,190 + +0.3
205,191 - +0.2
205,191 - -1.3

Or see this region's nucleotide sequence