Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06935 and EX31_RS06940 are separated by 49 nucleotides EX31_RS06940 and EX31_RS06945 are separated by 116 nucleotides EX31_RS06945 and EX31_RS06950 are separated by 16 nucleotides EX31_RS06950 and EX31_RS06955 are separated by 309 nucleotides
EX31_RS06935: EX31_RS06935 - ASCH domain-containing protein, at 176,397 to 176,702
_RS06935
EX31_RS06940: EX31_RS06940 - HD domain-containing protein, at 176,752 to 177,393
_RS06940
EX31_RS06945: EX31_RS06945 - helix-turn-helix domain-containing protein, at 177,510 to 178,472
_RS06945
EX31_RS06950: EX31_RS06950 - DNA-3-methyladenine glycosylase I, at 178,489 to 179,055
_RS06950
EX31_RS06955: EX31_RS06955 - hypothetical protein, at 179,365 to 179,913
_RS06955
Position (kb) 177
178
179 Strain fitness (log2 ratio) -1
0
1
2
3 at 176.634 kb on - strand, within EX31_RS06935 at 176.698 kb on + strand at 176.698 kb on + strand at 176.698 kb on + strand at 176.698 kb on + strand at 176.698 kb on + strand at 176.698 kb on + strand at 176.896 kb on - strand, within EX31_RS06940 at 176.896 kb on - strand, within EX31_RS06940 at 176.896 kb on - strand, within EX31_RS06940 at 176.946 kb on + strand, within EX31_RS06940 at 176.950 kb on + strand, within EX31_RS06940 at 176.951 kb on - strand, within EX31_RS06940 at 177.057 kb on + strand, within EX31_RS06940 at 177.120 kb on + strand, within EX31_RS06940 at 177.121 kb on - strand, within EX31_RS06940 at 177.121 kb on - strand, within EX31_RS06940 at 177.207 kb on + strand, within EX31_RS06940 at 177.208 kb on - strand, within EX31_RS06940 at 177.218 kb on + strand, within EX31_RS06940 at 177.219 kb on - strand, within EX31_RS06940 at 177.242 kb on - strand, within EX31_RS06940 at 177.242 kb on - strand, within EX31_RS06940 at 177.275 kb on + strand, within EX31_RS06940 at 177.276 kb on - strand, within EX31_RS06940 at 177.278 kb on + strand, within EX31_RS06940 at 177.279 kb on - strand, within EX31_RS06940 at 177.279 kb on - strand, within EX31_RS06940 at 177.279 kb on - strand, within EX31_RS06940 at 177.280 kb on + strand, within EX31_RS06940 at 177.280 kb on + strand, within EX31_RS06940 at 177.281 kb on - strand, within EX31_RS06940 at 177.304 kb on + strand, within EX31_RS06940 at 177.318 kb on + strand, within EX31_RS06940 at 177.393 kb on + strand at 177.396 kb on + strand at 177.396 kb on + strand at 177.397 kb on - strand at 177.428 kb on + strand at 177.428 kb on + strand at 177.440 kb on + strand at 177.527 kb on + strand at 177.618 kb on + strand, within EX31_RS06945 at 177.618 kb on + strand, within EX31_RS06945 at 177.619 kb on - strand, within EX31_RS06945 at 177.658 kb on + strand, within EX31_RS06945 at 177.658 kb on + strand, within EX31_RS06945 at 177.659 kb on - strand, within EX31_RS06945 at 177.959 kb on + strand, within EX31_RS06945 at 178.543 kb on - strand at 178.795 kb on - strand, within EX31_RS06950 at 179.177 kb on - strand at 179.256 kb on + strand at 179.257 kb on - strand at 179.257 kb on - strand at 179.333 kb on - strand at 179.333 kb on - strand at 179.337 kb on + strand at 179.388 kb on - strand at 179.388 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 176,634 - EX31_RS06935 0.77 -0.4 176,698 + +0.4 176,698 + -0.8 176,698 + -0.6 176,698 + +0.2 176,698 + -0.6 176,698 + +3.4 176,896 - EX31_RS06940 0.22 -0.4 176,896 - EX31_RS06940 0.22 +0.0 176,896 - EX31_RS06940 0.22 -0.2 176,946 + EX31_RS06940 0.30 -1.3 176,950 + EX31_RS06940 0.31 +0.0 176,951 - EX31_RS06940 0.31 +0.0 177,057 + EX31_RS06940 0.48 +0.9 177,120 + EX31_RS06940 0.57 -0.3 177,121 - EX31_RS06940 0.57 -1.2 177,121 - EX31_RS06940 0.57 +0.6 177,207 + EX31_RS06940 0.71 +0.0 177,208 - EX31_RS06940 0.71 -0.2 177,218 + EX31_RS06940 0.73 +1.0 177,219 - EX31_RS06940 0.73 +0.2 177,242 - EX31_RS06940 0.76 -0.2 177,242 - EX31_RS06940 0.76 +1.1 177,275 + EX31_RS06940 0.81 +1.3 177,276 - EX31_RS06940 0.82 +0.4 177,278 + EX31_RS06940 0.82 +0.0 177,279 - EX31_RS06940 0.82 +0.5 177,279 - EX31_RS06940 0.82 +0.1 177,279 - EX31_RS06940 0.82 -0.8 177,280 + EX31_RS06940 0.82 +0.3 177,280 + EX31_RS06940 0.82 -0.5 177,281 - EX31_RS06940 0.82 -0.2 177,304 + EX31_RS06940 0.86 +0.8 177,318 + EX31_RS06940 0.88 -1.5 177,393 + +0.4 177,396 + -0.3 177,396 + -0.5 177,397 - -0.1 177,428 + -0.9 177,428 + -0.5 177,440 + +1.2 177,527 + -0.0 177,618 + EX31_RS06945 0.11 -0.5 177,618 + EX31_RS06945 0.11 +0.1 177,619 - EX31_RS06945 0.11 +0.3 177,658 + EX31_RS06945 0.15 -0.8 177,658 + EX31_RS06945 0.15 -0.5 177,659 - EX31_RS06945 0.15 -1.3 177,959 + EX31_RS06945 0.47 -0.3 178,543 - -1.5 178,795 - EX31_RS06950 0.54 +0.6 179,177 - +0.3 179,256 + +1.7 179,257 - -0.5 179,257 - +0.4 179,333 - -1.3 179,333 - -0.6 179,337 + +0.2 179,388 - -0.2 179,388 - -0.3
Or see this region's nucleotide sequence