Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06920 and EX31_RS06925 are separated by 218 nucleotides EX31_RS06925 and EX31_RS06930 are separated by 123 nucleotides
EX31_RS06920: EX31_RS06920 - GlxA family transcriptional regulator, at 173,560 to 174,549
_RS06920
EX31_RS06925: EX31_RS06925 - transglycosylase SLT domain-containing protein, at 174,768 to 175,373
_RS06925
EX31_RS06930: EX31_RS06930 - cupin domain-containing protein, at 175,497 to 175,859
_RS06930
Position (kb) 174
175
176 Strain fitness (log2 ratio) -2
-1
0
1
2 at 173.836 kb on + strand, within EX31_RS06920 at 173.861 kb on - strand, within EX31_RS06920 at 173.960 kb on - strand, within EX31_RS06920 at 174.077 kb on + strand, within EX31_RS06920 at 174.078 kb on - strand, within EX31_RS06920 at 174.078 kb on - strand, within EX31_RS06920 at 174.078 kb on - strand, within EX31_RS06920 at 174.253 kb on + strand, within EX31_RS06920 at 174.254 kb on - strand, within EX31_RS06920 at 174.254 kb on - strand, within EX31_RS06920 at 174.303 kb on + strand, within EX31_RS06920 at 174.304 kb on - strand, within EX31_RS06920 at 174.304 kb on - strand, within EX31_RS06920 at 174.360 kb on + strand, within EX31_RS06920 at 174.484 kb on - strand at 174.509 kb on - strand at 174.509 kb on - strand at 174.509 kb on - strand at 174.574 kb on - strand at 174.694 kb on + strand at 174.698 kb on + strand at 174.909 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.987 kb on - strand, within EX31_RS06925 at 174.992 kb on + strand, within EX31_RS06925 at 175.046 kb on + strand, within EX31_RS06925 at 175.119 kb on + strand, within EX31_RS06925 at 175.223 kb on + strand, within EX31_RS06925 at 175.223 kb on + strand, within EX31_RS06925 at 175.265 kb on + strand, within EX31_RS06925 at 175.335 kb on + strand at 175.378 kb on + strand at 175.425 kb on - strand at 175.506 kb on - strand at 175.510 kb on + strand at 175.520 kb on + strand at 175.601 kb on + strand, within EX31_RS06930 at 175.939 kb on + strand at 175.939 kb on + strand at 175.948 kb on + strand at 175.948 kb on + strand at 175.960 kb on - strand at 176.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 173,836 + EX31_RS06920 0.28 +0.6 173,861 - EX31_RS06920 0.30 +0.1 173,960 - EX31_RS06920 0.40 -0.9 174,077 + EX31_RS06920 0.52 -0.3 174,078 - EX31_RS06920 0.52 +0.5 174,078 - EX31_RS06920 0.52 +0.2 174,078 - EX31_RS06920 0.52 -1.2 174,253 + EX31_RS06920 0.70 -0.0 174,254 - EX31_RS06920 0.70 -0.2 174,254 - EX31_RS06920 0.70 +0.6 174,303 + EX31_RS06920 0.75 +0.7 174,304 - EX31_RS06920 0.75 +0.3 174,304 - EX31_RS06920 0.75 +0.6 174,360 + EX31_RS06920 0.81 -2.3 174,484 - +0.5 174,509 - +2.1 174,509 - -1.2 174,509 - +0.2 174,574 - -0.5 174,694 + +0.7 174,698 + -1.2 174,909 + EX31_RS06925 0.23 -0.9 174,986 + EX31_RS06925 0.36 -0.6 174,986 + EX31_RS06925 0.36 +0.5 174,986 + EX31_RS06925 0.36 -0.6 174,986 + EX31_RS06925 0.36 -1.5 174,986 + EX31_RS06925 0.36 -0.2 174,986 + EX31_RS06925 0.36 +0.0 174,987 - EX31_RS06925 0.36 +2.0 174,992 + EX31_RS06925 0.37 -0.9 175,046 + EX31_RS06925 0.46 -1.5 175,119 + EX31_RS06925 0.58 +0.5 175,223 + EX31_RS06925 0.75 -0.3 175,223 + EX31_RS06925 0.75 -0.6 175,265 + EX31_RS06925 0.82 -0.1 175,335 + +0.6 175,378 + +0.3 175,425 - +0.2 175,506 - -1.8 175,510 + +0.0 175,520 + -0.8 175,601 + EX31_RS06930 0.29 -0.8 175,939 + +0.7 175,939 + +0.4 175,948 + -1.4 175,948 + -0.8 175,960 - +1.3 176,231 - -1.2
Or see this region's nucleotide sequence