Strain Fitness in Rahnella sp. WP5 around EX31_RS06780

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06775 and EX31_RS06780 are separated by 243 nucleotidesEX31_RS06780 and EX31_RS06785 overlap by 1 nucleotides EX31_RS06775: EX31_RS06775 - iron-containing alcohol dehydrogenase family protein, at 141,807 to 142,892 _RS06775 EX31_RS06780: EX31_RS06780 - glucose 1-dehydrogenase, at 143,136 to 143,906 _RS06780 EX31_RS06785: EX31_RS06785 - hypothetical protein, at 143,906 to 145,228 _RS06785 Position (kb) 143 144Strain fitness (log2 ratio) -2 -1 0 1 2at 142.231 kb on + strand, within EX31_RS06775at 142.422 kb on + strand, within EX31_RS06775at 142.502 kb on - strand, within EX31_RS06775at 142.511 kb on + strand, within EX31_RS06775at 142.581 kb on + strand, within EX31_RS06775at 142.581 kb on + strand, within EX31_RS06775at 142.581 kb on + strand, within EX31_RS06775at 142.582 kb on - strand, within EX31_RS06775at 142.817 kb on + strandat 142.848 kb on + strandat 143.077 kb on - strandat 143.167 kb on + strandat 143.186 kb on + strandat 143.186 kb on + strandat 143.187 kb on - strandat 143.188 kb on + strandat 143.188 kb on + strandat 143.189 kb on - strandat 143.189 kb on - strandat 143.189 kb on - strandat 143.189 kb on - strandat 143.189 kb on - strandat 143.391 kb on - strand, within EX31_RS06780at 143.417 kb on + strand, within EX31_RS06780at 143.429 kb on - strand, within EX31_RS06780at 143.604 kb on + strand, within EX31_RS06780at 143.604 kb on + strand, within EX31_RS06780at 143.604 kb on + strand, within EX31_RS06780at 143.605 kb on - strand, within EX31_RS06780at 143.605 kb on - strand, within EX31_RS06780at 143.605 kb on - strand, within EX31_RS06780at 143.605 kb on - strand, within EX31_RS06780at 144.214 kb on + strand, within EX31_RS06785at 144.225 kb on + strand, within EX31_RS06785at 144.225 kb on + strand, within EX31_RS06785at 144.225 kb on + strand, within EX31_RS06785at 144.225 kb on + strand, within EX31_RS06785at 144.225 kb on + strand, within EX31_RS06785at 144.226 kb on - strand, within EX31_RS06785at 144.226 kb on - strand, within EX31_RS06785at 144.226 kb on - strand, within EX31_RS06785at 144.226 kb on - strand, within EX31_RS06785at 144.226 kb on - strand, within EX31_RS06785at 144.226 kb on - strand, within EX31_RS06785at 144.227 kb on + strand, within EX31_RS06785at 144.227 kb on + strand, within EX31_RS06785at 144.227 kb on + strand, within EX31_RS06785at 144.227 kb on + strand, within EX31_RS06785at 144.227 kb on + strand, within EX31_RS06785at 144.227 kb on + strand, within EX31_RS06785at 144.227 kb on + strand, within EX31_RS06785at 144.228 kb on - strand, within EX31_RS06785at 144.228 kb on - strand, within EX31_RS06785at 144.228 kb on - strand, within EX31_RS06785at 144.228 kb on - strand, within EX31_RS06785at 144.255 kb on - strand, within EX31_RS06785at 144.262 kb on - strand, within EX31_RS06785at 144.288 kb on + strand, within EX31_RS06785at 144.344 kb on + strand, within EX31_RS06785at 144.513 kb on - strand, within EX31_RS06785at 144.534 kb on + strand, within EX31_RS06785at 144.535 kb on - strand, within EX31_RS06785at 144.621 kb on + strand, within EX31_RS06785at 144.883 kb on - strand, within EX31_RS06785

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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142,231 + EX31_RS06775 0.39 +0.4
142,422 + EX31_RS06775 0.57 +0.3
142,502 - EX31_RS06775 0.64 -0.3
142,511 + EX31_RS06775 0.65 +1.0
142,581 + EX31_RS06775 0.71 -0.1
142,581 + EX31_RS06775 0.71 +1.4
142,581 + EX31_RS06775 0.71 +0.1
142,582 - EX31_RS06775 0.71 -0.3
142,817 + -1.0
142,848 + -1.8
143,077 - -1.4
143,167 + +0.6
143,186 + -1.3
143,186 + -0.5
143,187 - +0.8
143,188 + +0.7
143,188 + +0.5
143,189 - +0.8
143,189 - +0.7
143,189 - +0.4
143,189 - +1.2
143,189 - +0.4
143,391 - EX31_RS06780 0.33 +0.3
143,417 + EX31_RS06780 0.36 -0.0
143,429 - EX31_RS06780 0.38 -0.5
143,604 + EX31_RS06780 0.61 -0.8
143,604 + EX31_RS06780 0.61 -0.1
143,604 + EX31_RS06780 0.61 -0.6
143,605 - EX31_RS06780 0.61 -2.1
143,605 - EX31_RS06780 0.61 -0.9
143,605 - EX31_RS06780 0.61 +0.2
143,605 - EX31_RS06780 0.61 -0.7
144,214 + EX31_RS06785 0.23 +0.5
144,225 + EX31_RS06785 0.24 +0.4
144,225 + EX31_RS06785 0.24 -0.3
144,225 + EX31_RS06785 0.24 -1.4
144,225 + EX31_RS06785 0.24 -0.7
144,225 + EX31_RS06785 0.24 -0.0
144,226 - EX31_RS06785 0.24 +0.4
144,226 - EX31_RS06785 0.24 -0.0
144,226 - EX31_RS06785 0.24 -0.0
144,226 - EX31_RS06785 0.24 +2.1
144,226 - EX31_RS06785 0.24 -0.4
144,226 - EX31_RS06785 0.24 +0.6
144,227 + EX31_RS06785 0.24 -1.1
144,227 + EX31_RS06785 0.24 +0.4
144,227 + EX31_RS06785 0.24 +0.7
144,227 + EX31_RS06785 0.24 -0.2
144,227 + EX31_RS06785 0.24 -0.2
144,227 + EX31_RS06785 0.24 -1.4
144,227 + EX31_RS06785 0.24 -1.2
144,228 - EX31_RS06785 0.24 +0.0
144,228 - EX31_RS06785 0.24 -0.1
144,228 - EX31_RS06785 0.24 -0.3
144,228 - EX31_RS06785 0.24 -0.7
144,255 - EX31_RS06785 0.26 +0.3
144,262 - EX31_RS06785 0.27 -2.2
144,288 + EX31_RS06785 0.29 -1.1
144,344 + EX31_RS06785 0.33 +0.1
144,513 - EX31_RS06785 0.46 -0.2
144,534 + EX31_RS06785 0.47 -0.3
144,535 - EX31_RS06785 0.48 +0.3
144,621 + EX31_RS06785 0.54 +0.2
144,883 - EX31_RS06785 0.74 +0.9

Or see this region's nucleotide sequence