Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02480 and EX31_RS02485 overlap by 14 nucleotides EX31_RS02485 and EX31_RS02490 overlap by 4 nucleotides EX31_RS02490 and EX31_RS02495 overlap by 11 nucleotides
EX31_RS02480: EX31_RS02480 - acyl-CoA/acyl-ACP dehydrogenase, at 525,839 to 526,969
_RS02480
EX31_RS02485: EX31_RS02485 - hypothetical protein, at 526,956 to 527,807
_RS02485
EX31_RS02490: EX31_RS02490 - 3-oxoacyl-ACP synthase, at 527,804 to 528,751
_RS02490
EX31_RS02495: EX31_RS02495 - cytochrome P450, at 528,741 to 530,057
_RS02495
Position (kb) 526
527
528 Strain fitness (log2 ratio) -1
0
1 at 525.998 kb on - strand, within EX31_RS02480 at 526.047 kb on + strand, within EX31_RS02480 at 526.047 kb on + strand, within EX31_RS02480 at 526.048 kb on - strand, within EX31_RS02480 at 526.048 kb on - strand, within EX31_RS02480 at 526.048 kb on - strand, within EX31_RS02480 at 526.339 kb on - strand, within EX31_RS02480 at 526.531 kb on + strand, within EX31_RS02480 at 526.532 kb on - strand, within EX31_RS02480 at 526.598 kb on + strand, within EX31_RS02480 at 526.599 kb on - strand, within EX31_RS02480 at 526.599 kb on - strand, within EX31_RS02480 at 526.599 kb on - strand, within EX31_RS02480 at 526.672 kb on + strand, within EX31_RS02480 at 526.672 kb on + strand, within EX31_RS02480 at 526.676 kb on + strand, within EX31_RS02480 at 526.676 kb on + strand, within EX31_RS02480 at 526.676 kb on + strand, within EX31_RS02480 at 526.739 kb on + strand, within EX31_RS02480 at 526.765 kb on - strand, within EX31_RS02480 at 526.883 kb on + strand at 526.884 kb on - strand at 526.911 kb on + strand at 526.911 kb on + strand at 527.056 kb on - strand, within EX31_RS02485 at 527.278 kb on + strand, within EX31_RS02485 at 527.278 kb on + strand, within EX31_RS02485 at 527.278 kb on + strand, within EX31_RS02485 at 527.278 kb on + strand, within EX31_RS02485 at 527.279 kb on - strand, within EX31_RS02485 at 527.279 kb on - strand, within EX31_RS02485 at 527.279 kb on - strand, within EX31_RS02485 at 527.279 kb on - strand, within EX31_RS02485 at 527.430 kb on + strand, within EX31_RS02485 at 527.430 kb on + strand, within EX31_RS02485 at 527.431 kb on - strand, within EX31_RS02485 at 527.431 kb on - strand, within EX31_RS02485 at 527.509 kb on + strand, within EX31_RS02485 at 527.510 kb on - strand, within EX31_RS02485 at 527.510 kb on - strand, within EX31_RS02485 at 527.515 kb on - strand, within EX31_RS02485 at 527.654 kb on + strand, within EX31_RS02485 at 527.680 kb on + strand, within EX31_RS02485 at 527.680 kb on + strand, within EX31_RS02485 at 527.681 kb on - strand, within EX31_RS02485 at 527.681 kb on - strand, within EX31_RS02485 at 527.736 kb on + strand at 527.737 kb on - strand at 527.737 kb on - strand at 527.831 kb on - strand at 528.003 kb on + strand, within EX31_RS02490 at 528.003 kb on + strand, within EX31_RS02490 at 528.003 kb on + strand, within EX31_RS02490 at 528.003 kb on + strand, within EX31_RS02490 at 528.209 kb on + strand, within EX31_RS02490 at 528.210 kb on - strand, within EX31_RS02490 at 528.270 kb on - strand, within EX31_RS02490 at 528.270 kb on - strand, within EX31_RS02490 at 528.409 kb on + strand, within EX31_RS02490 at 528.409 kb on + strand, within EX31_RS02490 at 528.412 kb on + strand, within EX31_RS02490 at 528.621 kb on + strand, within EX31_RS02490 at 528.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 525,998 - EX31_RS02480 0.14 -0.1 526,047 + EX31_RS02480 0.18 +0.9 526,047 + EX31_RS02480 0.18 +0.3 526,048 - EX31_RS02480 0.18 +0.6 526,048 - EX31_RS02480 0.18 +0.2 526,048 - EX31_RS02480 0.18 -0.6 526,339 - EX31_RS02480 0.44 -1.3 526,531 + EX31_RS02480 0.61 -0.3 526,532 - EX31_RS02480 0.61 -0.7 526,598 + EX31_RS02480 0.67 +0.7 526,599 - EX31_RS02480 0.67 -0.1 526,599 - EX31_RS02480 0.67 -1.6 526,599 - EX31_RS02480 0.67 +0.6 526,672 + EX31_RS02480 0.74 +0.8 526,672 + EX31_RS02480 0.74 +0.7 526,676 + EX31_RS02480 0.74 -1.0 526,676 + EX31_RS02480 0.74 -0.5 526,676 + EX31_RS02480 0.74 -1.0 526,739 + EX31_RS02480 0.80 +0.9 526,765 - EX31_RS02480 0.82 +1.0 526,883 + +1.4 526,884 - -0.5 526,911 + -0.0 526,911 + -0.0 527,056 - EX31_RS02485 0.12 -0.8 527,278 + EX31_RS02485 0.38 +0.1 527,278 + EX31_RS02485 0.38 -1.7 527,278 + EX31_RS02485 0.38 -0.7 527,278 + EX31_RS02485 0.38 +0.4 527,279 - EX31_RS02485 0.38 -0.8 527,279 - EX31_RS02485 0.38 -0.9 527,279 - EX31_RS02485 0.38 +0.1 527,279 - EX31_RS02485 0.38 +0.2 527,430 + EX31_RS02485 0.56 -1.0 527,430 + EX31_RS02485 0.56 -0.5 527,431 - EX31_RS02485 0.56 -0.2 527,431 - EX31_RS02485 0.56 +0.2 527,509 + EX31_RS02485 0.65 -1.0 527,510 - EX31_RS02485 0.65 -0.7 527,510 - EX31_RS02485 0.65 -0.1 527,515 - EX31_RS02485 0.66 +1.1 527,654 + EX31_RS02485 0.82 +0.2 527,680 + EX31_RS02485 0.85 -0.9 527,680 + EX31_RS02485 0.85 -1.6 527,681 - EX31_RS02485 0.85 +0.3 527,681 - EX31_RS02485 0.85 -0.5 527,736 + +0.2 527,737 - +0.2 527,737 - -0.6 527,831 - +0.7 528,003 + EX31_RS02490 0.21 +0.1 528,003 + EX31_RS02490 0.21 +0.2 528,003 + EX31_RS02490 0.21 -0.7 528,003 + EX31_RS02490 0.21 -0.5 528,209 + EX31_RS02490 0.43 -0.5 528,210 - EX31_RS02490 0.43 -1.2 528,270 - EX31_RS02490 0.49 +0.6 528,270 - EX31_RS02490 0.49 -0.8 528,409 + EX31_RS02490 0.64 -0.6 528,409 + EX31_RS02490 0.64 -1.6 528,412 + EX31_RS02490 0.64 -1.6 528,621 + EX31_RS02490 0.86 +0.2 528,670 - -0.0
Or see this region's nucleotide sequence