Strain Fitness in Rahnella sp. WP5 around EX31_RS02310

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02305 and EX31_RS02310 are separated by 56 nucleotidesEX31_RS02310 and EX31_RS02315 overlap by 4 nucleotides EX31_RS02305: EX31_RS02305 - cytochrome c, at 498,448 to 499,728 _RS02305 EX31_RS02310: EX31_RS02310 - hypothetical protein, at 499,785 to 500,174 _RS02310 EX31_RS02315: EX31_RS02315 - MFS transporter, at 500,171 to 501,559 _RS02315 Position (kb) 499 500 501Strain fitness (log2 ratio) -2 -1 0 1at 498.808 kb on + strand, within EX31_RS02305at 498.845 kb on - strand, within EX31_RS02305at 498.851 kb on - strand, within EX31_RS02305at 498.856 kb on - strand, within EX31_RS02305at 499.016 kb on - strand, within EX31_RS02305at 499.054 kb on - strand, within EX31_RS02305at 499.193 kb on - strand, within EX31_RS02305at 499.303 kb on + strand, within EX31_RS02305at 499.303 kb on + strand, within EX31_RS02305at 499.303 kb on + strand, within EX31_RS02305at 499.303 kb on + strand, within EX31_RS02305at 499.304 kb on - strand, within EX31_RS02305at 499.304 kb on - strand, within EX31_RS02305at 499.304 kb on - strand, within EX31_RS02305at 499.425 kb on + strand, within EX31_RS02305at 499.648 kb on - strandat 499.727 kb on - strandat 499.727 kb on - strandat 499.849 kb on - strand, within EX31_RS02310at 499.849 kb on - strand, within EX31_RS02310at 500.134 kb on - strand, within EX31_RS02310at 500.199 kb on - strandat 500.199 kb on - strandat 500.215 kb on + strandat 500.258 kb on - strandat 500.426 kb on - strand, within EX31_RS02315at 500.426 kb on - strand, within EX31_RS02315at 500.426 kb on - strand, within EX31_RS02315at 500.426 kb on - strand, within EX31_RS02315at 500.430 kb on - strand, within EX31_RS02315at 500.430 kb on - strand, within EX31_RS02315at 500.489 kb on - strand, within EX31_RS02315at 500.489 kb on - strand, within EX31_RS02315at 500.585 kb on + strand, within EX31_RS02315at 500.586 kb on - strand, within EX31_RS02315at 500.586 kb on - strand, within EX31_RS02315at 500.712 kb on + strand, within EX31_RS02315at 500.755 kb on + strand, within EX31_RS02315at 500.755 kb on + strand, within EX31_RS02315at 500.755 kb on + strand, within EX31_RS02315at 500.756 kb on - strand, within EX31_RS02315at 500.756 kb on - strand, within EX31_RS02315at 500.764 kb on - strand, within EX31_RS02315at 500.764 kb on - strand, within EX31_RS02315at 500.799 kb on - strand, within EX31_RS02315at 500.799 kb on - strand, within EX31_RS02315at 500.846 kb on + strand, within EX31_RS02315

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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498,808 + EX31_RS02305 0.28 +0.7
498,845 - EX31_RS02305 0.31 +0.4
498,851 - EX31_RS02305 0.31 -0.9
498,856 - EX31_RS02305 0.32 -0.4
499,016 - EX31_RS02305 0.44 -1.3
499,054 - EX31_RS02305 0.47 -1.5
499,193 - EX31_RS02305 0.58 -0.3
499,303 + EX31_RS02305 0.67 -0.3
499,303 + EX31_RS02305 0.67 -1.5
499,303 + EX31_RS02305 0.67 -0.6
499,303 + EX31_RS02305 0.67 -0.6
499,304 - EX31_RS02305 0.67 -0.6
499,304 - EX31_RS02305 0.67 -0.6
499,304 - EX31_RS02305 0.67 +0.3
499,425 + EX31_RS02305 0.76 -0.2
499,648 - -0.2
499,727 - -0.2
499,727 - -0.9
499,849 - EX31_RS02310 0.16 -0.2
499,849 - EX31_RS02310 0.16 +0.2
500,134 - EX31_RS02310 0.89 -1.9
500,199 - -0.4
500,199 - +0.1
500,215 + -0.4
500,258 - -0.6
500,426 - EX31_RS02315 0.18 +0.3
500,426 - EX31_RS02315 0.18 -0.3
500,426 - EX31_RS02315 0.18 -1.0
500,426 - EX31_RS02315 0.18 -0.1
500,430 - EX31_RS02315 0.19 -0.3
500,430 - EX31_RS02315 0.19 +0.2
500,489 - EX31_RS02315 0.23 -0.4
500,489 - EX31_RS02315 0.23 +0.7
500,585 + EX31_RS02315 0.30 -0.5
500,586 - EX31_RS02315 0.30 -0.1
500,586 - EX31_RS02315 0.30 +0.2
500,712 + EX31_RS02315 0.39 -0.3
500,755 + EX31_RS02315 0.42 -2.0
500,755 + EX31_RS02315 0.42 +0.8
500,755 + EX31_RS02315 0.42 -0.0
500,756 - EX31_RS02315 0.42 -0.1
500,756 - EX31_RS02315 0.42 -1.8
500,764 - EX31_RS02315 0.43 +0.2
500,764 - EX31_RS02315 0.43 +0.3
500,799 - EX31_RS02315 0.45 -0.1
500,799 - EX31_RS02315 0.45 +1.2
500,846 + EX31_RS02315 0.49 -1.1

Or see this region's nucleotide sequence