Strain Fitness in Rahnella sp. WP5 around EX31_RS02280

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02270 and EX31_RS02275 are separated by 14 nucleotidesEX31_RS02275 and EX31_RS02280 are separated by 65 nucleotidesEX31_RS02280 and EX31_RS02285 are separated by 127 nucleotidesEX31_RS02285 and EX31_RS02290 are separated by 347 nucleotides EX31_RS02270: EX31_RS02270 - transcriptional regulator ChbR, at 490,960 to 491,796 _RS02270 EX31_RS02275: EX31_RS02275 - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 491,811 to 492,158 _RS02275 EX31_RS02280: EX31_RS02280 - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 492,224 to 493,582 _RS02280 EX31_RS02285: EX31_RS02285 - PTS sugar transporter subunit IIB, at 493,710 to 494,030 _RS02285 EX31_RS02290: EX31_RS02290 - LacI family DNA-binding transcriptional regulator, at 494,378 to 495,412 _RS02290 Position (kb) 492 493 494Strain fitness (log2 ratio) -2 -1 0 1at 491.413 kb on + strand, within EX31_RS02270at 491.486 kb on + strand, within EX31_RS02270at 491.486 kb on + strand, within EX31_RS02270at 491.486 kb on + strand, within EX31_RS02270at 491.487 kb on - strand, within EX31_RS02270at 491.487 kb on - strand, within EX31_RS02270at 491.524 kb on + strand, within EX31_RS02270at 491.524 kb on + strand, within EX31_RS02270at 491.670 kb on - strand, within EX31_RS02270at 491.701 kb on + strand, within EX31_RS02270at 492.147 kb on + strandat 492.274 kb on + strandat 492.275 kb on - strandat 492.292 kb on + strandat 492.292 kb on + strandat 492.292 kb on + strandat 492.293 kb on - strandat 492.293 kb on - strandat 492.315 kb on + strandat 492.315 kb on + strandat 492.316 kb on - strandat 492.316 kb on - strandat 492.316 kb on - strandat 492.316 kb on - strandat 492.509 kb on - strand, within EX31_RS02280at 492.551 kb on - strand, within EX31_RS02280at 492.572 kb on - strand, within EX31_RS02280at 492.628 kb on + strand, within EX31_RS02280at 492.681 kb on + strand, within EX31_RS02280at 492.762 kb on + strand, within EX31_RS02280at 492.932 kb on - strand, within EX31_RS02280at 492.932 kb on - strand, within EX31_RS02280at 492.955 kb on - strand, within EX31_RS02280at 492.956 kb on + strand, within EX31_RS02280at 492.956 kb on + strand, within EX31_RS02280at 492.957 kb on - strand, within EX31_RS02280at 492.957 kb on - strand, within EX31_RS02280at 492.957 kb on - strand, within EX31_RS02280at 492.977 kb on - strand, within EX31_RS02280at 493.118 kb on + strand, within EX31_RS02280at 493.118 kb on + strand, within EX31_RS02280at 493.119 kb on - strand, within EX31_RS02280at 493.119 kb on - strand, within EX31_RS02280at 493.119 kb on - strand, within EX31_RS02280at 493.173 kb on + strand, within EX31_RS02280at 493.174 kb on - strand, within EX31_RS02280at 493.191 kb on + strand, within EX31_RS02280at 493.191 kb on + strand, within EX31_RS02280at 493.303 kb on + strand, within EX31_RS02280at 493.303 kb on + strand, within EX31_RS02280at 493.430 kb on + strand, within EX31_RS02280at 493.436 kb on - strand, within EX31_RS02280at 493.438 kb on + strand, within EX31_RS02280at 493.522 kb on + strandat 493.550 kb on + strandat 493.550 kb on + strandat 493.586 kb on + strandat 493.587 kb on - strandat 493.761 kb on + strand, within EX31_RS02285at 493.844 kb on + strand, within EX31_RS02285at 493.844 kb on + strand, within EX31_RS02285at 493.844 kb on + strand, within EX31_RS02285at 493.845 kb on - strand, within EX31_RS02285at 493.845 kb on - strand, within EX31_RS02285at 493.847 kb on - strand, within EX31_RS02285at 493.943 kb on - strand, within EX31_RS02285at 493.967 kb on + strand, within EX31_RS02285at 493.968 kb on - strand, within EX31_RS02285at 494.011 kb on + strandat 494.033 kb on + strandat 494.033 kb on + strandat 494.034 kb on - strandat 494.097 kb on + strandat 494.097 kb on + strandat 494.098 kb on - strandat 494.151 kb on - strandat 494.151 kb on - strandat 494.186 kb on - strandat 494.186 kb on - strandat 494.242 kb on + strandat 494.259 kb on + strandat 494.259 kb on + strandat 494.259 kb on + strandat 494.260 kb on - strandat 494.264 kb on + strandat 494.264 kb on + strandat 494.265 kb on - strandat 494.300 kb on + strandat 494.306 kb on + strandat 494.307 kb on - strandat 494.325 kb on - strandat 494.554 kb on + strand, within EX31_RS02290at 494.561 kb on + strand, within EX31_RS02290at 494.561 kb on + strand, within EX31_RS02290at 494.561 kb on + strand, within EX31_RS02290at 494.561 kb on + strand, within EX31_RS02290at 494.562 kb on - strand, within EX31_RS02290at 494.572 kb on + strand, within EX31_RS02290at 494.572 kb on + strand, within EX31_RS02290

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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491,413 + EX31_RS02270 0.54 -0.1
491,486 + EX31_RS02270 0.63 -1.0
491,486 + EX31_RS02270 0.63 -0.3
491,486 + EX31_RS02270 0.63 -0.8
491,487 - EX31_RS02270 0.63 -0.4
491,487 - EX31_RS02270 0.63 -1.6
491,524 + EX31_RS02270 0.67 +0.5
491,524 + EX31_RS02270 0.67 +0.4
491,670 - EX31_RS02270 0.85 -2.0
491,701 + EX31_RS02270 0.89 -1.7
492,147 + -1.0
492,274 + +1.3
492,275 - -0.3
492,292 + -0.2
492,292 + +0.6
492,292 + +0.2
492,293 - -0.1
492,293 - -0.2
492,315 + -0.9
492,315 + -1.9
492,316 - -1.3
492,316 - +0.2
492,316 - -0.1
492,316 - -0.3
492,509 - EX31_RS02280 0.21 -0.5
492,551 - EX31_RS02280 0.24 -1.6
492,572 - EX31_RS02280 0.26 -0.5
492,628 + EX31_RS02280 0.30 -0.2
492,681 + EX31_RS02280 0.34 -0.2
492,762 + EX31_RS02280 0.40 -1.8
492,932 - EX31_RS02280 0.52 +0.4
492,932 - EX31_RS02280 0.52 +0.0
492,955 - EX31_RS02280 0.54 -1.7
492,956 + EX31_RS02280 0.54 -0.8
492,956 + EX31_RS02280 0.54 +0.2
492,957 - EX31_RS02280 0.54 +0.4
492,957 - EX31_RS02280 0.54 +0.0
492,957 - EX31_RS02280 0.54 -1.2
492,977 - EX31_RS02280 0.55 -0.2
493,118 + EX31_RS02280 0.66 -2.6
493,118 + EX31_RS02280 0.66 -1.1
493,119 - EX31_RS02280 0.66 -0.4
493,119 - EX31_RS02280 0.66 -1.1
493,119 - EX31_RS02280 0.66 -0.0
493,173 + EX31_RS02280 0.70 +1.1
493,174 - EX31_RS02280 0.70 +0.1
493,191 + EX31_RS02280 0.71 -0.8
493,191 + EX31_RS02280 0.71 +0.1
493,303 + EX31_RS02280 0.79 +0.2
493,303 + EX31_RS02280 0.79 +0.1
493,430 + EX31_RS02280 0.89 -0.6
493,436 - EX31_RS02280 0.89 -0.3
493,438 + EX31_RS02280 0.89 -2.2
493,522 + -0.5
493,550 + +0.4
493,550 + +0.5
493,586 + +0.3
493,587 - +0.4
493,761 + EX31_RS02285 0.16 -1.6
493,844 + EX31_RS02285 0.42 -0.8
493,844 + EX31_RS02285 0.42 -0.2
493,844 + EX31_RS02285 0.42 +0.2
493,845 - EX31_RS02285 0.42 +0.1
493,845 - EX31_RS02285 0.42 +0.4
493,847 - EX31_RS02285 0.43 +0.0
493,943 - EX31_RS02285 0.73 +1.1
493,967 + EX31_RS02285 0.80 -1.5
493,968 - EX31_RS02285 0.80 +0.0
494,011 + -0.7
494,033 + +0.8
494,033 + +0.4
494,034 - +1.3
494,097 + -0.1
494,097 + +0.0
494,098 - -0.3
494,151 - -1.6
494,151 - +1.0
494,186 - +0.8
494,186 - -0.0
494,242 + -0.3
494,259 + -0.5
494,259 + +0.4
494,259 + -0.1
494,260 - -0.0
494,264 + -0.5
494,264 + -0.2
494,265 - +0.4
494,300 + -0.5
494,306 + -0.3
494,307 - +0.2
494,325 - -0.2
494,554 + EX31_RS02290 0.17 +0.1
494,561 + EX31_RS02290 0.18 -0.1
494,561 + EX31_RS02290 0.18 -0.0
494,561 + EX31_RS02290 0.18 -0.0
494,561 + EX31_RS02290 0.18 -1.1
494,562 - EX31_RS02290 0.18 -0.1
494,572 + EX31_RS02290 0.19 +0.1
494,572 + EX31_RS02290 0.19 -0.1

Or see this region's nucleotide sequence