Strain Fitness in Rahnella sp. WP5 around EX31_RS01885

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01880 and EX31_RS01885 are separated by 669 nucleotidesEX31_RS01885 and EX31_RS01890 are separated by 113 nucleotidesEX31_RS01890 and EX31_RS01895 are separated by 73 nucleotides EX31_RS01880: EX31_RS01880 - type VI secretion system ATPase TssH, at 406,564 to 409,221 _RS01880 EX31_RS01885: EX31_RS01885 - type IV secretion protein Rhs, at 409,891 to 410,289 _RS01885 EX31_RS01890: EX31_RS01890 - hypothetical protein, at 410,403 to 410,747 _RS01890 EX31_RS01895: EX31_RS01895 - type VI secretion system tip protein VgrG, at 410,821 to 413,367 _RS01895 Position (kb) 409 410 411Strain fitness (log2 ratio) -2 -1 0 1at 408.905 kb on - strand, within EX31_RS01880at 408.905 kb on - strand, within EX31_RS01880at 409.290 kb on - strandat 409.331 kb on + strandat 409.340 kb on - strandat 409.340 kb on - strandat 409.468 kb on - strandat 409.639 kb on - strandat 409.819 kb on - strandat 409.845 kb on + strandat 409.975 kb on + strand, within EX31_RS01885at 410.114 kb on + strand, within EX31_RS01885at 410.157 kb on - strand, within EX31_RS01885at 410.193 kb on + strand, within EX31_RS01885at 410.257 kb on + strandat 410.328 kb on + strandat 410.358 kb on + strandat 410.882 kb on - strandat 410.972 kb on + strandat 410.983 kb on - strandat 411.030 kb on + strandat 411.030 kb on + strandat 411.188 kb on + strand, within EX31_RS01895at 411.188 kb on + strand, within EX31_RS01895at 411.188 kb on + strand, within EX31_RS01895at 411.188 kb on + strand, within EX31_RS01895at 411.193 kb on - strand, within EX31_RS01895at 411.245 kb on + strand, within EX31_RS01895at 411.246 kb on - strand, within EX31_RS01895at 411.254 kb on + strand, within EX31_RS01895at 411.254 kb on + strand, within EX31_RS01895

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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408,905 - EX31_RS01880 0.88 +0.0
408,905 - EX31_RS01880 0.88 -0.1
409,290 - -0.1
409,331 + +0.3
409,340 - +0.2
409,340 - -0.2
409,468 - -0.7
409,639 - +0.3
409,819 - +0.0
409,845 + -1.7
409,975 + EX31_RS01885 0.21 -0.9
410,114 + EX31_RS01885 0.56 -1.8
410,157 - EX31_RS01885 0.67 -0.8
410,193 + EX31_RS01885 0.76 -0.4
410,257 + +0.3
410,328 + -0.4
410,358 + +0.2
410,882 - -2.1
410,972 + -0.2
410,983 - -2.7
411,030 + +0.6
411,030 + +0.3
411,188 + EX31_RS01895 0.14 -1.4
411,188 + EX31_RS01895 0.14 +1.2
411,188 + EX31_RS01895 0.14 +0.6
411,188 + EX31_RS01895 0.14 -0.8
411,193 - EX31_RS01895 0.15 +0.2
411,245 + EX31_RS01895 0.17 +0.3
411,246 - EX31_RS01895 0.17 +0.2
411,254 + EX31_RS01895 0.17 -0.9
411,254 + EX31_RS01895 0.17 -0.8

Or see this region's nucleotide sequence