Strain Fitness in Rahnella sp. WP5 around EX31_RS01335

Experiment: NL-CCM_agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS01330 and EX31_RS01335 are separated by 68 nucleotidesEX31_RS01335 and EX31_RS01340 are separated by 86 nucleotides EX31_RS01330: EX31_RS01330 - porin, at 296,495 to 297,175 _RS01330 EX31_RS01335: EX31_RS01335 - right-handed parallel beta-helix repeat-containing protein, at 297,244 to 299,412 _RS01335 EX31_RS01340: EX31_RS01340 - MFS transporter, at 299,499 to 301,064 _RS01340 Position (kb) 297 298 299 300Strain fitness (log2 ratio) -2 -1 0 1 2 3at 296.253 kb on - strandat 296.253 kb on - strandat 296.259 kb on - strandat 296.259 kb on - strandat 296.298 kb on - strandat 296.325 kb on - strandat 296.325 kb on - strandat 296.325 kb on - strandat 296.329 kb on - strandat 296.335 kb on - strandat 296.348 kb on - strandat 296.380 kb on + strandat 296.408 kb on - strandat 296.411 kb on - strandat 296.411 kb on - strandat 296.605 kb on + strand, within EX31_RS01330at 296.608 kb on - strand, within EX31_RS01330at 296.619 kb on - strand, within EX31_RS01330at 296.682 kb on + strand, within EX31_RS01330at 296.773 kb on - strand, within EX31_RS01330at 296.827 kb on + strand, within EX31_RS01330at 296.828 kb on - strand, within EX31_RS01330at 296.853 kb on + strand, within EX31_RS01330at 296.854 kb on - strand, within EX31_RS01330at 297.067 kb on + strand, within EX31_RS01330at 297.067 kb on + strand, within EX31_RS01330at 297.067 kb on + strand, within EX31_RS01330at 297.386 kb on + strandat 297.463 kb on - strand, within EX31_RS01335at 297.491 kb on + strand, within EX31_RS01335at 297.889 kb on - strand, within EX31_RS01335at 297.978 kb on + strand, within EX31_RS01335at 297.986 kb on + strand, within EX31_RS01335at 297.986 kb on + strand, within EX31_RS01335at 297.986 kb on + strand, within EX31_RS01335at 297.987 kb on - strand, within EX31_RS01335at 297.987 kb on - strand, within EX31_RS01335at 297.987 kb on - strand, within EX31_RS01335at 297.987 kb on - strand, within EX31_RS01335at 298.000 kb on - strand, within EX31_RS01335at 298.023 kb on + strand, within EX31_RS01335at 298.075 kb on + strand, within EX31_RS01335at 298.154 kb on + strand, within EX31_RS01335at 298.192 kb on + strand, within EX31_RS01335at 298.213 kb on - strand, within EX31_RS01335at 298.271 kb on + strand, within EX31_RS01335at 298.271 kb on + strand, within EX31_RS01335at 298.272 kb on - strand, within EX31_RS01335at 298.272 kb on - strand, within EX31_RS01335at 298.272 kb on - strand, within EX31_RS01335at 298.302 kb on + strand, within EX31_RS01335at 298.349 kb on + strand, within EX31_RS01335at 298.482 kb on + strand, within EX31_RS01335at 298.482 kb on + strand, within EX31_RS01335at 298.482 kb on + strand, within EX31_RS01335at 298.482 kb on + strand, within EX31_RS01335at 298.482 kb on + strand, within EX31_RS01335at 298.482 kb on + strand, within EX31_RS01335at 298.486 kb on + strand, within EX31_RS01335at 298.618 kb on + strand, within EX31_RS01335at 298.658 kb on + strand, within EX31_RS01335at 298.658 kb on + strand, within EX31_RS01335at 298.659 kb on - strand, within EX31_RS01335at 298.659 kb on - strand, within EX31_RS01335at 298.659 kb on - strand, within EX31_RS01335at 298.814 kb on + strand, within EX31_RS01335at 298.815 kb on - strand, within EX31_RS01335at 298.842 kb on + strand, within EX31_RS01335at 298.932 kb on + strand, within EX31_RS01335at 298.933 kb on - strand, within EX31_RS01335at 299.005 kb on + strand, within EX31_RS01335at 299.120 kb on + strand, within EX31_RS01335at 299.126 kb on + strand, within EX31_RS01335at 299.126 kb on + strand, within EX31_RS01335at 299.126 kb on + strand, within EX31_RS01335at 299.127 kb on - strand, within EX31_RS01335at 299.412 kb on + strandat 299.412 kb on + strandat 299.412 kb on + strandat 299.412 kb on + strandat 299.413 kb on - strandat 299.413 kb on - strandat 299.413 kb on - strandat 299.413 kb on - strandat 299.413 kb on - strandat 299.413 kb on - strandat 299.413 kb on - strandat 299.413 kb on - strandat 299.501 kb on - strandat 299.558 kb on + strandat 299.640 kb on + strandat 299.641 kb on - strandat 299.681 kb on + strand, within EX31_RS01340at 299.682 kb on - strand, within EX31_RS01340at 299.689 kb on - strand, within EX31_RS01340at 299.689 kb on - strand, within EX31_RS01340at 299.848 kb on + strand, within EX31_RS01340at 299.926 kb on + strand, within EX31_RS01340at 299.926 kb on + strand, within EX31_RS01340at 299.982 kb on - strand, within EX31_RS01340at 299.982 kb on - strand, within EX31_RS01340at 299.983 kb on + strand, within EX31_RS01340at 300.001 kb on + strand, within EX31_RS01340at 300.001 kb on + strand, within EX31_RS01340at 300.001 kb on + strand, within EX31_RS01340at 300.002 kb on - strand, within EX31_RS01340at 300.002 kb on - strand, within EX31_RS01340at 300.004 kb on + strand, within EX31_RS01340at 300.004 kb on + strand, within EX31_RS01340at 300.064 kb on + strand, within EX31_RS01340at 300.065 kb on - strand, within EX31_RS01340at 300.143 kb on - strand, within EX31_RS01340at 300.179 kb on + strand, within EX31_RS01340at 300.250 kb on + strand, within EX31_RS01340at 300.251 kb on - strand, within EX31_RS01340at 300.251 kb on - strand, within EX31_RS01340at 300.274 kb on + strand, within EX31_RS01340at 300.275 kb on - strand, within EX31_RS01340at 300.275 kb on - strand, within EX31_RS01340at 300.275 kb on - strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.322 kb on + strand, within EX31_RS01340at 300.323 kb on - strand, within EX31_RS01340at 300.323 kb on - strand, within EX31_RS01340at 300.323 kb on - strand, within EX31_RS01340at 300.323 kb on - strand, within EX31_RS01340at 300.323 kb on - strand, within EX31_RS01340at 300.323 kb on - strand, within EX31_RS01340at 300.323 kb on - strand, within EX31_RS01340at 300.338 kb on + strand, within EX31_RS01340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
remove
296,253 - -0.1
296,253 - +0.1
296,259 - +0.0
296,259 - +0.4
296,298 - -0.0
296,325 - -0.7
296,325 - +0.5
296,325 - -0.8
296,329 - -1.1
296,335 - -0.0
296,348 - +0.4
296,380 + -1.2
296,408 - -1.4
296,411 - -0.6
296,411 - -1.1
296,605 + EX31_RS01330 0.16 +0.3
296,608 - EX31_RS01330 0.17 -0.5
296,619 - EX31_RS01330 0.18 -0.5
296,682 + EX31_RS01330 0.27 -2.0
296,773 - EX31_RS01330 0.41 +0.2
296,827 + EX31_RS01330 0.49 -0.9
296,828 - EX31_RS01330 0.49 +0.5
296,853 + EX31_RS01330 0.53 +0.4
296,854 - EX31_RS01330 0.53 +1.2
297,067 + EX31_RS01330 0.84 +0.3
297,067 + EX31_RS01330 0.84 -1.8
297,067 + EX31_RS01330 0.84 +1.4
297,386 + +0.2
297,463 - EX31_RS01335 0.10 +0.9
297,491 + EX31_RS01335 0.11 +0.4
297,889 - EX31_RS01335 0.30 +0.1
297,978 + EX31_RS01335 0.34 -0.9
297,986 + EX31_RS01335 0.34 -0.2
297,986 + EX31_RS01335 0.34 -0.7
297,986 + EX31_RS01335 0.34 +0.3
297,987 - EX31_RS01335 0.34 -0.3
297,987 - EX31_RS01335 0.34 +0.1
297,987 - EX31_RS01335 0.34 +0.1
297,987 - EX31_RS01335 0.34 +0.0
298,000 - EX31_RS01335 0.35 +0.6
298,023 + EX31_RS01335 0.36 +1.7
298,075 + EX31_RS01335 0.38 +1.4
298,154 + EX31_RS01335 0.42 -0.4
298,192 + EX31_RS01335 0.44 +0.2
298,213 - EX31_RS01335 0.45 +0.4
298,271 + EX31_RS01335 0.47 -1.5
298,271 + EX31_RS01335 0.47 +0.4
298,272 - EX31_RS01335 0.47 +1.4
298,272 - EX31_RS01335 0.47 -0.2
298,272 - EX31_RS01335 0.47 +0.3
298,302 + EX31_RS01335 0.49 +1.4
298,349 + EX31_RS01335 0.51 +0.8
298,482 + EX31_RS01335 0.57 +0.0
298,482 + EX31_RS01335 0.57 +3.3
298,482 + EX31_RS01335 0.57 +0.4
298,482 + EX31_RS01335 0.57 +0.7
298,482 + EX31_RS01335 0.57 +0.5
298,482 + EX31_RS01335 0.57 -0.5
298,486 + EX31_RS01335 0.57 +0.0
298,618 + EX31_RS01335 0.63 -0.9
298,658 + EX31_RS01335 0.65 +0.7
298,658 + EX31_RS01335 0.65 -1.5
298,659 - EX31_RS01335 0.65 +0.0
298,659 - EX31_RS01335 0.65 +1.2
298,659 - EX31_RS01335 0.65 +0.4
298,814 + EX31_RS01335 0.72 -0.5
298,815 - EX31_RS01335 0.72 +0.2
298,842 + EX31_RS01335 0.74 +1.7
298,932 + EX31_RS01335 0.78 -0.4
298,933 - EX31_RS01335 0.78 +0.0
299,005 + EX31_RS01335 0.81 -0.3
299,120 + EX31_RS01335 0.86 -0.3
299,126 + EX31_RS01335 0.87 -0.1
299,126 + EX31_RS01335 0.87 +0.5
299,126 + EX31_RS01335 0.87 +0.4
299,127 - EX31_RS01335 0.87 +1.2
299,412 + -0.5
299,412 + +0.7
299,412 + -0.3
299,412 + +0.8
299,413 - +0.4
299,413 - +1.0
299,413 - -0.6
299,413 - +0.4
299,413 - +0.4
299,413 - -0.6
299,413 - -0.0
299,413 - -0.3
299,501 - +0.3
299,558 + +0.2
299,640 + -0.4
299,641 - +0.5
299,681 + EX31_RS01340 0.12 +0.2
299,682 - EX31_RS01340 0.12 -0.9
299,689 - EX31_RS01340 0.12 -0.3
299,689 - EX31_RS01340 0.12 -0.1
299,848 + EX31_RS01340 0.22 +0.4
299,926 + EX31_RS01340 0.27 -1.1
299,926 + EX31_RS01340 0.27 +0.6
299,982 - EX31_RS01340 0.31 -0.5
299,982 - EX31_RS01340 0.31 -0.8
299,983 + EX31_RS01340 0.31 +0.1
300,001 + EX31_RS01340 0.32 +0.5
300,001 + EX31_RS01340 0.32 -0.7
300,001 + EX31_RS01340 0.32 +0.4
300,002 - EX31_RS01340 0.32 -0.5
300,002 - EX31_RS01340 0.32 -0.7
300,004 + EX31_RS01340 0.32 +0.2
300,004 + EX31_RS01340 0.32 -0.3
300,064 + EX31_RS01340 0.36 -0.1
300,065 - EX31_RS01340 0.36 +2.1
300,143 - EX31_RS01340 0.41 +0.0
300,179 + EX31_RS01340 0.43 -1.8
300,250 + EX31_RS01340 0.48 -0.1
300,251 - EX31_RS01340 0.48 -0.2
300,251 - EX31_RS01340 0.48 +0.1
300,274 + EX31_RS01340 0.49 -0.2
300,275 - EX31_RS01340 0.50 -1.5
300,275 - EX31_RS01340 0.50 -0.2
300,275 - EX31_RS01340 0.50 -0.1
300,322 + EX31_RS01340 0.53 +0.1
300,322 + EX31_RS01340 0.53 -1.0
300,322 + EX31_RS01340 0.53 +0.3
300,322 + EX31_RS01340 0.53 +0.1
300,322 + EX31_RS01340 0.53 +0.8
300,322 + EX31_RS01340 0.53 +0.6
300,322 + EX31_RS01340 0.53 +1.4
300,322 + EX31_RS01340 0.53 +0.2
300,322 + EX31_RS01340 0.53 -0.1
300,322 + EX31_RS01340 0.53 -0.8
300,322 + EX31_RS01340 0.53 +0.2
300,322 + EX31_RS01340 0.53 -0.8
300,322 + EX31_RS01340 0.53 -1.3
300,322 + EX31_RS01340 0.53 +0.2
300,323 - EX31_RS01340 0.53 -0.4
300,323 - EX31_RS01340 0.53 -1.2
300,323 - EX31_RS01340 0.53 +3.1
300,323 - EX31_RS01340 0.53 +0.2
300,323 - EX31_RS01340 0.53 -0.5
300,323 - EX31_RS01340 0.53 -0.0
300,323 - EX31_RS01340 0.53 +0.3
300,338 + EX31_RS01340 0.54 +0.6

Or see this region's nucleotide sequence