Strain Fitness in Rahnella sp. WP5 around EX31_RS01085

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01080 and EX31_RS01085 overlap by 4 nucleotidesEX31_RS01085 and EX31_RS01090 overlap by 4 nucleotidesEX31_RS01090 and EX31_RS01095 overlap by 4 nucleotides EX31_RS01080: EX31_RS01080 - metal ABC transporter substrate-binding protein, at 235,343 to 236,284 _RS01080 EX31_RS01085: EX31_RS01085 - ATP-binding cassette domain-containing protein, at 236,281 to 237,060 _RS01085 EX31_RS01090: EX31_RS01090 - metal ABC transporter permease, at 237,057 to 237,911 _RS01090 EX31_RS01095: EX31_RS01095 - metal ABC transporter permease, at 237,908 to 238,762 _RS01095 Position (kb) 236 237 238Strain fitness (log2 ratio) -2 -1 0 1at 235.290 kb on + strandat 235.292 kb on + strandat 235.292 kb on + strandat 235.303 kb on + strandat 235.371 kb on + strandat 235.379 kb on + strandat 235.543 kb on - strand, within EX31_RS01080at 235.645 kb on + strand, within EX31_RS01080at 235.732 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.749 kb on - strand, within EX31_RS01080at 235.802 kb on + strand, within EX31_RS01080at 235.802 kb on + strand, within EX31_RS01080at 235.835 kb on + strand, within EX31_RS01080at 235.860 kb on - strand, within EX31_RS01080at 235.874 kb on - strand, within EX31_RS01080at 235.982 kb on + strand, within EX31_RS01080at 235.997 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.228 kb on + strandat 236.228 kb on + strandat 236.228 kb on + strandat 236.228 kb on + strandat 236.229 kb on - strandat 236.316 kb on + strandat 236.316 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.418 kb on + strand, within EX31_RS01085at 236.433 kb on + strand, within EX31_RS01085at 236.433 kb on + strand, within EX31_RS01085at 236.527 kb on + strand, within EX31_RS01085at 236.527 kb on + strand, within EX31_RS01085at 236.528 kb on - strand, within EX31_RS01085at 236.641 kb on - strand, within EX31_RS01085at 236.965 kb on - strand, within EX31_RS01085at 237.012 kb on + strandat 237.012 kb on + strandat 237.088 kb on - strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.094 kb on - strandat 237.095 kb on + strandat 237.095 kb on + strandat 237.096 kb on - strandat 237.276 kb on - strand, within EX31_RS01090at 237.379 kb on + strand, within EX31_RS01090at 237.434 kb on + strand, within EX31_RS01090at 237.463 kb on + strand, within EX31_RS01090at 237.476 kb on + strand, within EX31_RS01090at 237.509 kb on + strand, within EX31_RS01090at 237.602 kb on + strand, within EX31_RS01090at 237.631 kb on + strand, within EX31_RS01090at 237.691 kb on - strand, within EX31_RS01090at 237.778 kb on - strand, within EX31_RS01090at 237.890 kb on + strandat 237.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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235,290 + +0.3
235,292 + +0.6
235,292 + -0.4
235,303 + +0.3
235,371 + +0.3
235,379 + -0.1
235,543 - EX31_RS01080 0.21 -0.2
235,645 + EX31_RS01080 0.32 +0.2
235,732 + EX31_RS01080 0.41 +0.5
235,748 + EX31_RS01080 0.43 -0.2
235,748 + EX31_RS01080 0.43 -0.1
235,748 + EX31_RS01080 0.43 +0.4
235,748 + EX31_RS01080 0.43 -2.0
235,748 + EX31_RS01080 0.43 -1.4
235,749 - EX31_RS01080 0.43 +1.1
235,802 + EX31_RS01080 0.49 -0.4
235,802 + EX31_RS01080 0.49 +0.7
235,835 + EX31_RS01080 0.52 +0.9
235,860 - EX31_RS01080 0.55 -1.0
235,874 - EX31_RS01080 0.56 -0.0
235,982 + EX31_RS01080 0.68 -1.0
235,997 + EX31_RS01080 0.69 -0.2
236,015 + EX31_RS01080 0.71 +0.2
236,015 + EX31_RS01080 0.71 -0.1
236,015 + EX31_RS01080 0.71 -1.0
236,186 + EX31_RS01080 0.89 +0.6
236,186 + EX31_RS01080 0.89 +0.4
236,186 + EX31_RS01080 0.89 +0.0
236,186 + EX31_RS01080 0.89 +0.1
236,228 + -0.9
236,228 + +0.1
236,228 + -0.4
236,228 + +0.2
236,229 - -1.6
236,316 + -0.3
236,316 + -1.0
236,329 + +0.6
236,329 + +0.0
236,329 + -0.0
236,329 + -0.1
236,329 + +0.2
236,329 + -1.5
236,418 + EX31_RS01085 0.18 -0.6
236,433 + EX31_RS01085 0.19 +0.7
236,433 + EX31_RS01085 0.19 +0.3
236,527 + EX31_RS01085 0.32 -0.8
236,527 + EX31_RS01085 0.32 -0.7
236,528 - EX31_RS01085 0.32 -1.2
236,641 - EX31_RS01085 0.46 -0.7
236,965 - EX31_RS01085 0.88 -0.5
237,012 + +0.1
237,012 + +0.0
237,088 - -0.0
237,093 + +0.5
237,093 + +0.3
237,093 + +0.0
237,093 + +0.0
237,093 + +0.3
237,093 + -1.1
237,093 + +1.2
237,093 + +0.6
237,093 + -0.1
237,093 + +0.6
237,093 + +0.3
237,093 + -0.0
237,093 + -0.1
237,093 + +0.2
237,093 + +0.2
237,093 + -0.7
237,093 + -0.8
237,093 + -0.6
237,093 + +0.0
237,093 + -0.2
237,094 - -1.2
237,095 + +0.0
237,095 + +0.2
237,096 - -1.1
237,276 - EX31_RS01090 0.26 +1.5
237,379 + EX31_RS01090 0.38 -1.5
237,434 + EX31_RS01090 0.44 -1.6
237,463 + EX31_RS01090 0.47 -0.9
237,476 + EX31_RS01090 0.49 -1.2
237,509 + EX31_RS01090 0.53 -0.4
237,602 + EX31_RS01090 0.64 +0.2
237,631 + EX31_RS01090 0.67 +0.2
237,691 - EX31_RS01090 0.74 -0.9
237,778 - EX31_RS01090 0.84 +0.3
237,890 + -0.6
237,956 - -0.3

Or see this region's nucleotide sequence