Strain Fitness in Rahnella sp. WP5 around EX31_RS00805

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00800 and EX31_RS00805 are separated by 168 nucleotidesEX31_RS00805 and EX31_RS00810 are separated by 2 nucleotidesEX31_RS00810 and EX31_RS00815 are separated by 246 nucleotides EX31_RS00800: EX31_RS00800 - family 1 glycosylhydrolase, at 174,311 to 175,747 _RS00800 EX31_RS00805: EX31_RS00805 - translesion error-prone DNA polymerase V subunit UmuC, at 175,916 to 177,178 _RS00805 EX31_RS00810: EX31_RS00810 - translesion error-prone DNA polymerase V autoproteolytic subunit, at 177,181 to 177,600 _RS00810 EX31_RS00815: EX31_RS00815 - alpha/beta hydrolase, at 177,847 to 178,860 _RS00815 Position (kb) 175 176 177 178Strain fitness (log2 ratio) -2 -1 0 1 2at 175.043 kb on + strand, within EX31_RS00800at 175.044 kb on - strand, within EX31_RS00800at 175.049 kb on + strand, within EX31_RS00800at 175.057 kb on + strand, within EX31_RS00800at 175.136 kb on - strand, within EX31_RS00800at 175.146 kb on - strand, within EX31_RS00800at 175.146 kb on - strand, within EX31_RS00800at 175.162 kb on - strand, within EX31_RS00800at 175.189 kb on + strand, within EX31_RS00800at 175.225 kb on + strand, within EX31_RS00800at 175.225 kb on + strand, within EX31_RS00800at 175.226 kb on - strand, within EX31_RS00800at 175.236 kb on - strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.253 kb on + strand, within EX31_RS00800at 175.254 kb on - strand, within EX31_RS00800at 175.254 kb on - strand, within EX31_RS00800at 175.254 kb on - strand, within EX31_RS00800at 175.254 kb on - strand, within EX31_RS00800at 175.254 kb on - strand, within EX31_RS00800at 175.384 kb on + strand, within EX31_RS00800at 175.384 kb on + strand, within EX31_RS00800at 175.385 kb on - strand, within EX31_RS00800at 175.385 kb on - strand, within EX31_RS00800at 175.403 kb on + strand, within EX31_RS00800at 175.403 kb on + strand, within EX31_RS00800at 175.460 kb on - strand, within EX31_RS00800at 175.480 kb on + strand, within EX31_RS00800at 175.481 kb on - strand, within EX31_RS00800at 175.506 kb on - strand, within EX31_RS00800at 175.568 kb on + strand, within EX31_RS00800at 175.569 kb on - strand, within EX31_RS00800at 175.570 kb on + strand, within EX31_RS00800at 175.570 kb on + strand, within EX31_RS00800at 175.571 kb on - strand, within EX31_RS00800at 175.571 kb on - strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.585 kb on + strand, within EX31_RS00800at 175.586 kb on - strand, within EX31_RS00800at 175.586 kb on - strand, within EX31_RS00800at 175.586 kb on - strand, within EX31_RS00800at 175.586 kb on - strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.600 kb on + strand, within EX31_RS00800at 175.601 kb on - strand, within EX31_RS00800at 175.601 kb on - strand, within EX31_RS00800at 175.657 kb on + strandat 175.707 kb on - strandat 175.739 kb on - strandat 175.748 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.807 kb on + strandat 175.911 kb on + strandat 175.932 kb on - strandat 175.932 kb on - strandat 176.042 kb on + strandat 176.163 kb on + strand, within EX31_RS00805at 176.163 kb on + strand, within EX31_RS00805at 176.164 kb on - strand, within EX31_RS00805at 176.233 kb on + strand, within EX31_RS00805at 176.247 kb on - strand, within EX31_RS00805at 176.272 kb on - strand, within EX31_RS00805at 176.275 kb on - strand, within EX31_RS00805at 176.344 kb on + strand, within EX31_RS00805at 176.345 kb on - strand, within EX31_RS00805at 176.432 kb on - strand, within EX31_RS00805at 176.578 kb on + strand, within EX31_RS00805at 176.582 kb on - strand, within EX31_RS00805at 176.647 kb on + strand, within EX31_RS00805at 176.736 kb on - strand, within EX31_RS00805at 176.798 kb on + strand, within EX31_RS00805at 176.804 kb on - strand, within EX31_RS00805at 177.034 kb on + strand, within EX31_RS00805at 177.281 kb on - strand, within EX31_RS00810at 177.286 kb on + strand, within EX31_RS00810at 177.287 kb on - strand, within EX31_RS00810at 177.287 kb on - strand, within EX31_RS00810at 177.300 kb on + strand, within EX31_RS00810at 177.359 kb on - strand, within EX31_RS00810at 177.386 kb on - strand, within EX31_RS00810at 177.420 kb on + strand, within EX31_RS00810at 177.421 kb on - strand, within EX31_RS00810at 177.421 kb on - strand, within EX31_RS00810at 177.421 kb on - strand, within EX31_RS00810at 177.421 kb on - strand, within EX31_RS00810at 177.446 kb on + strand, within EX31_RS00810at 177.446 kb on + strand, within EX31_RS00810at 177.446 kb on + strand, within EX31_RS00810at 177.446 kb on + strand, within EX31_RS00810at 177.447 kb on - strand, within EX31_RS00810at 177.503 kb on + strand, within EX31_RS00810at 177.617 kb on + strandat 177.728 kb on - strandat 177.784 kb on - strandat 177.784 kb on - strandat 177.784 kb on - strandat 177.784 kb on - strandat 177.833 kb on - strandat 177.835 kb on + strandat 177.836 kb on - strandat 177.914 kb on + strandat 177.914 kb on + strandat 177.914 kb on + strandat 177.915 kb on - strandat 178.131 kb on + strand, within EX31_RS00815at 178.132 kb on - strand, within EX31_RS00815at 178.132 kb on - strand, within EX31_RS00815at 178.132 kb on - strand, within EX31_RS00815at 178.132 kb on - strand, within EX31_RS00815

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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175,043 + EX31_RS00800 0.51 -0.8
175,044 - EX31_RS00800 0.51 -0.7
175,049 + EX31_RS00800 0.51 +1.1
175,057 + EX31_RS00800 0.52 -0.6
175,136 - EX31_RS00800 0.57 -0.2
175,146 - EX31_RS00800 0.58 +0.9
175,146 - EX31_RS00800 0.58 +1.4
175,162 - EX31_RS00800 0.59 +0.6
175,189 + EX31_RS00800 0.61 -1.5
175,225 + EX31_RS00800 0.64 +0.3
175,225 + EX31_RS00800 0.64 -0.8
175,226 - EX31_RS00800 0.64 +0.3
175,236 - EX31_RS00800 0.64 -1.3
175,253 + EX31_RS00800 0.66 +0.1
175,253 + EX31_RS00800 0.66 -0.0
175,253 + EX31_RS00800 0.66 -0.8
175,253 + EX31_RS00800 0.66 -0.3
175,253 + EX31_RS00800 0.66 -0.6
175,253 + EX31_RS00800 0.66 -0.2
175,253 + EX31_RS00800 0.66 +0.3
175,254 - EX31_RS00800 0.66 -0.3
175,254 - EX31_RS00800 0.66 -0.0
175,254 - EX31_RS00800 0.66 -0.3
175,254 - EX31_RS00800 0.66 +0.0
175,254 - EX31_RS00800 0.66 +0.1
175,384 + EX31_RS00800 0.75 +0.2
175,384 + EX31_RS00800 0.75 +0.1
175,385 - EX31_RS00800 0.75 -0.5
175,385 - EX31_RS00800 0.75 -0.2
175,403 + EX31_RS00800 0.76 -0.1
175,403 + EX31_RS00800 0.76 -0.3
175,460 - EX31_RS00800 0.80 +0.5
175,480 + EX31_RS00800 0.81 +0.0
175,481 - EX31_RS00800 0.81 +0.9
175,506 - EX31_RS00800 0.83 -0.5
175,568 + EX31_RS00800 0.87 -0.0
175,569 - EX31_RS00800 0.88 +0.5
175,570 + EX31_RS00800 0.88 -0.4
175,570 + EX31_RS00800 0.88 -0.7
175,571 - EX31_RS00800 0.88 -0.6
175,571 - EX31_RS00800 0.88 -0.3
175,585 + EX31_RS00800 0.89 -0.1
175,585 + EX31_RS00800 0.89 -2.3
175,585 + EX31_RS00800 0.89 -0.1
175,585 + EX31_RS00800 0.89 -0.1
175,585 + EX31_RS00800 0.89 -0.5
175,585 + EX31_RS00800 0.89 -0.4
175,585 + EX31_RS00800 0.89 +0.8
175,586 - EX31_RS00800 0.89 +0.6
175,586 - EX31_RS00800 0.89 +0.8
175,586 - EX31_RS00800 0.89 -0.0
175,586 - EX31_RS00800 0.89 +0.1
175,600 + EX31_RS00800 0.90 -0.5
175,600 + EX31_RS00800 0.90 -1.5
175,600 + EX31_RS00800 0.90 +0.5
175,600 + EX31_RS00800 0.90 +0.1
175,600 + EX31_RS00800 0.90 +0.8
175,600 + EX31_RS00800 0.90 +0.2
175,600 + EX31_RS00800 0.90 -0.7
175,600 + EX31_RS00800 0.90 +0.1
175,600 + EX31_RS00800 0.90 +0.4
175,601 - EX31_RS00800 0.90 +0.8
175,601 - EX31_RS00800 0.90 +0.6
175,657 + -0.1
175,707 - +0.3
175,739 - +0.2
175,748 + -0.2
175,807 + +0.2
175,807 + +0.1
175,807 + -0.4
175,911 + -0.9
175,932 - -0.4
175,932 - -0.3
176,042 + -0.8
176,163 + EX31_RS00805 0.20 -1.2
176,163 + EX31_RS00805 0.20 -0.8
176,164 - EX31_RS00805 0.20 -1.3
176,233 + EX31_RS00805 0.25 -0.4
176,247 - EX31_RS00805 0.26 -0.4
176,272 - EX31_RS00805 0.28 +1.4
176,275 - EX31_RS00805 0.28 -0.1
176,344 + EX31_RS00805 0.34 +0.3
176,345 - EX31_RS00805 0.34 -0.8
176,432 - EX31_RS00805 0.41 -0.4
176,578 + EX31_RS00805 0.52 -1.2
176,582 - EX31_RS00805 0.53 -0.7
176,647 + EX31_RS00805 0.58 +2.0
176,736 - EX31_RS00805 0.65 -0.1
176,798 + EX31_RS00805 0.70 -0.9
176,804 - EX31_RS00805 0.70 -0.4
177,034 + EX31_RS00805 0.89 +1.2
177,281 - EX31_RS00810 0.24 +0.3
177,286 + EX31_RS00810 0.25 -0.5
177,287 - EX31_RS00810 0.25 -0.8
177,287 - EX31_RS00810 0.25 -0.2
177,300 + EX31_RS00810 0.28 +1.2
177,359 - EX31_RS00810 0.42 -0.1
177,386 - EX31_RS00810 0.49 -0.2
177,420 + EX31_RS00810 0.57 +0.6
177,421 - EX31_RS00810 0.57 +0.7
177,421 - EX31_RS00810 0.57 -1.2
177,421 - EX31_RS00810 0.57 +0.4
177,421 - EX31_RS00810 0.57 -0.2
177,446 + EX31_RS00810 0.63 +0.1
177,446 + EX31_RS00810 0.63 -0.7
177,446 + EX31_RS00810 0.63 +1.5
177,446 + EX31_RS00810 0.63 -0.4
177,447 - EX31_RS00810 0.63 +0.1
177,503 + EX31_RS00810 0.77 -0.4
177,617 + +1.0
177,728 - +2.1
177,784 - -0.7
177,784 - +0.7
177,784 - +0.8
177,784 - -0.2
177,833 - -0.5
177,835 + -0.6
177,836 - +1.2
177,914 + +0.9
177,914 + +0.5
177,914 + -1.4
177,915 - -2.6
178,131 + EX31_RS00815 0.28 -0.1
178,132 - EX31_RS00815 0.28 -0.5
178,132 - EX31_RS00815 0.28 -0.4
178,132 - EX31_RS00815 0.28 -0.7
178,132 - EX31_RS00815 0.28 -0.2

Or see this region's nucleotide sequence