Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00345 and EX31_RS00350 are separated by 4 nucleotides EX31_RS00350 and EX31_RS00355 are separated by 388 nucleotides
EX31_RS00345: EX31_RS00345 - LysR family transcriptional regulator, at 72,388 to 73,293
_RS00345
EX31_RS00350: EX31_RS00350 - exodeoxyribonuclease X, at 73,298 to 73,960
_RS00350
EX31_RS00355: EX31_RS00355 - mandelate racemase, at 74,349 to 75,503
_RS00355
Position (kb) 73
74 Strain fitness (log2 ratio) -2
-1
0
1 at 72.301 kb on + strand at 72.302 kb on - strand at 72.302 kb on - strand at 72.304 kb on + strand at 72.304 kb on + strand at 72.304 kb on + strand at 72.305 kb on - strand at 72.305 kb on - strand at 72.305 kb on - strand at 72.305 kb on - strand at 72.333 kb on + strand at 72.334 kb on - strand at 72.337 kb on - strand at 72.377 kb on - strand at 72.410 kb on + strand at 72.410 kb on + strand at 72.411 kb on - strand at 72.411 kb on - strand at 72.411 kb on - strand at 72.411 kb on - strand at 72.411 kb on - strand at 72.414 kb on + strand at 72.414 kb on + strand at 72.414 kb on + strand at 72.414 kb on + strand at 72.415 kb on - strand at 72.415 kb on - strand at 72.415 kb on - strand at 72.415 kb on - strand at 72.415 kb on - strand at 72.449 kb on + strand at 72.449 kb on + strand at 72.477 kb on - strand at 72.558 kb on + strand, within EX31_RS00345 at 72.559 kb on - strand, within EX31_RS00345 at 72.559 kb on - strand, within EX31_RS00345 at 72.761 kb on + strand, within EX31_RS00345 at 72.761 kb on + strand, within EX31_RS00345 at 72.761 kb on + strand, within EX31_RS00345 at 72.762 kb on - strand, within EX31_RS00345 at 72.762 kb on - strand, within EX31_RS00345 at 72.762 kb on - strand, within EX31_RS00345 at 72.762 kb on - strand, within EX31_RS00345 at 72.895 kb on - strand, within EX31_RS00345 at 72.955 kb on + strand, within EX31_RS00345 at 72.955 kb on + strand, within EX31_RS00345 at 72.955 kb on + strand, within EX31_RS00345 at 72.956 kb on - strand, within EX31_RS00345 at 73.000 kb on + strand, within EX31_RS00345 at 73.154 kb on + strand, within EX31_RS00345 at 73.154 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.157 kb on - strand, within EX31_RS00345 at 73.157 kb on - strand, within EX31_RS00345 at 73.157 kb on - strand, within EX31_RS00345 at 73.157 kb on - strand, within EX31_RS00345 at 73.157 kb on - strand, within EX31_RS00345 at 73.361 kb on - strand at 73.380 kb on + strand, within EX31_RS00350 at 73.520 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.626 kb on + strand, within EX31_RS00350 at 73.627 kb on - strand, within EX31_RS00350 at 73.627 kb on - strand, within EX31_RS00350 at 73.627 kb on - strand, within EX31_RS00350 at 73.731 kb on + strand, within EX31_RS00350 at 73.731 kb on + strand, within EX31_RS00350 at 73.731 kb on + strand, within EX31_RS00350 at 73.731 kb on + strand, within EX31_RS00350 at 73.732 kb on - strand, within EX31_RS00350 at 73.732 kb on - strand, within EX31_RS00350 at 73.732 kb on - strand, within EX31_RS00350 at 73.732 kb on - strand, within EX31_RS00350 at 73.735 kb on - strand, within EX31_RS00350 at 73.801 kb on + strand, within EX31_RS00350 at 73.925 kb on + strand at 73.926 kb on - strand at 73.926 kb on - strand at 73.949 kb on - strand at 73.960 kb on + strand at 73.961 kb on - strand at 73.992 kb on + strand at 74.001 kb on + strand at 74.048 kb on + strand at 74.068 kb on + strand at 74.068 kb on + strand at 74.069 kb on - strand at 74.069 kb on - strand at 74.069 kb on - strand at 74.083 kb on + strand at 74.092 kb on + strand at 74.179 kb on - strand at 74.301 kb on - strand at 74.301 kb on - strand at 74.342 kb on + strand at 74.357 kb on - strand at 74.385 kb on + strand at 74.560 kb on + strand, within EX31_RS00355 at 74.681 kb on + strand, within EX31_RS00355 at 74.926 kb on + strand, within EX31_RS00355
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 72,301 + +0.4 72,302 - -0.4 72,302 - +0.1 72,304 + +0.0 72,304 + +0.2 72,304 + -0.2 72,305 - -0.1 72,305 - -1.4 72,305 - -0.2 72,305 - +1.2 72,333 + +0.7 72,334 - +1.6 72,337 - -0.2 72,377 - +0.1 72,410 + -0.0 72,410 + +0.3 72,411 - -1.6 72,411 - -0.1 72,411 - +0.1 72,411 - -1.5 72,411 - +0.0 72,414 + -0.1 72,414 + -0.6 72,414 + -1.2 72,414 + -1.1 72,415 - -0.6 72,415 - +0.6 72,415 - +0.2 72,415 - -2.6 72,415 - -0.3 72,449 + +1.2 72,449 + -0.1 72,477 - -0.6 72,558 + EX31_RS00345 0.19 -0.1 72,559 - EX31_RS00345 0.19 -1.1 72,559 - EX31_RS00345 0.19 +0.5 72,761 + EX31_RS00345 0.41 +0.5 72,761 + EX31_RS00345 0.41 +0.2 72,761 + EX31_RS00345 0.41 +0.7 72,762 - EX31_RS00345 0.41 +1.5 72,762 - EX31_RS00345 0.41 +0.2 72,762 - EX31_RS00345 0.41 +0.9 72,762 - EX31_RS00345 0.41 -0.4 72,895 - EX31_RS00345 0.56 +0.3 72,955 + EX31_RS00345 0.63 -0.3 72,955 + EX31_RS00345 0.63 +0.2 72,955 + EX31_RS00345 0.63 -1.1 72,956 - EX31_RS00345 0.63 +0.2 73,000 + EX31_RS00345 0.68 -0.5 73,154 + EX31_RS00345 0.85 -0.7 73,154 + EX31_RS00345 0.85 +0.5 73,156 + EX31_RS00345 0.85 -0.8 73,156 + EX31_RS00345 0.85 -0.2 73,156 + EX31_RS00345 0.85 -1.1 73,156 + EX31_RS00345 0.85 -0.2 73,156 + EX31_RS00345 0.85 +0.4 73,156 + EX31_RS00345 0.85 -2.5 73,157 - EX31_RS00345 0.85 +0.2 73,157 - EX31_RS00345 0.85 +0.1 73,157 - EX31_RS00345 0.85 -1.0 73,157 - EX31_RS00345 0.85 -1.3 73,157 - EX31_RS00345 0.85 -0.2 73,361 - +1.6 73,380 + EX31_RS00350 0.12 +0.6 73,520 - EX31_RS00350 0.33 -0.1 73,540 - EX31_RS00350 0.37 +0.3 73,540 - EX31_RS00350 0.37 +0.7 73,540 - EX31_RS00350 0.37 -0.0 73,540 - EX31_RS00350 0.37 -0.6 73,540 - EX31_RS00350 0.37 +0.3 73,540 - EX31_RS00350 0.37 -0.6 73,540 - EX31_RS00350 0.37 -1.2 73,540 - EX31_RS00350 0.37 -1.5 73,626 + EX31_RS00350 0.49 -0.7 73,627 - EX31_RS00350 0.50 -0.5 73,627 - EX31_RS00350 0.50 -0.4 73,627 - EX31_RS00350 0.50 -0.2 73,731 + EX31_RS00350 0.65 -0.5 73,731 + EX31_RS00350 0.65 -1.1 73,731 + EX31_RS00350 0.65 +0.6 73,731 + EX31_RS00350 0.65 -1.0 73,732 - EX31_RS00350 0.65 -0.2 73,732 - EX31_RS00350 0.65 -1.2 73,732 - EX31_RS00350 0.65 +0.3 73,732 - EX31_RS00350 0.65 -0.1 73,735 - EX31_RS00350 0.66 +0.2 73,801 + EX31_RS00350 0.76 -0.6 73,925 + -0.0 73,926 - -0.2 73,926 - +0.1 73,949 - +0.4 73,960 + -1.0 73,961 - +0.6 73,992 + -0.2 74,001 + -0.1 74,048 + -0.9 74,068 + -0.5 74,068 + -1.2 74,069 - -1.1 74,069 - +0.6 74,069 - -1.0 74,083 + +0.3 74,092 + -1.5 74,179 - +0.3 74,301 - -0.5 74,301 - +0.4 74,342 + +0.0 74,357 - +0.2 74,385 + +1.1 74,560 + EX31_RS00355 0.18 +0.4 74,681 + EX31_RS00355 0.29 -0.4 74,926 + EX31_RS00355 0.50 -0.0
Or see this region's nucleotide sequence