Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00185 and EX31_RS00190 are separated by 535 nucleotides EX31_RS00190 and EX31_RS00195 are separated by 212 nucleotides EX31_RS00195 and EX31_RS00200 are separated by 162 nucleotides
EX31_RS00185: EX31_RS00185 - LysR family transcriptional regulator, at 39,582 to 40,466
_RS00185
EX31_RS00190: EX31_RS00190 - H-NS histone family protein, at 41,002 to 41,409
_RS00190
EX31_RS00195: EX31_RS00195 - hydrogenase, at 41,622 to 42,155
_RS00195
EX31_RS00200: EX31_RS00200 - hypothetical protein, at 42,318 to 42,782
_RS00200
Position (kb) 41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.056 kb on + strand, within EX31_RS00185 at 40.056 kb on + strand, within EX31_RS00185 at 40.056 kb on + strand, within EX31_RS00185 at 40.056 kb on + strand, within EX31_RS00185 at 40.056 kb on + strand, within EX31_RS00185 at 40.056 kb on + strand, within EX31_RS00185 at 40.056 kb on + strand, within EX31_RS00185 at 40.058 kb on + strand, within EX31_RS00185 at 40.087 kb on + strand, within EX31_RS00185 at 40.087 kb on + strand, within EX31_RS00185 at 40.087 kb on + strand, within EX31_RS00185 at 40.137 kb on + strand, within EX31_RS00185 at 40.233 kb on + strand, within EX31_RS00185 at 40.233 kb on + strand, within EX31_RS00185 at 40.233 kb on + strand, within EX31_RS00185 at 40.292 kb on + strand, within EX31_RS00185 at 40.292 kb on + strand, within EX31_RS00185 at 40.292 kb on + strand, within EX31_RS00185 at 40.292 kb on + strand, within EX31_RS00185 at 40.305 kb on - strand, within EX31_RS00185 at 40.351 kb on - strand, within EX31_RS00185 at 40.351 kb on - strand, within EX31_RS00185 at 40.539 kb on - strand at 40.539 kb on - strand at 40.542 kb on + strand at 40.543 kb on - strand at 40.662 kb on - strand at 40.667 kb on + strand at 40.667 kb on + strand at 40.668 kb on - strand at 40.712 kb on - strand at 40.715 kb on + strand at 40.716 kb on - strand at 40.718 kb on + strand at 40.725 kb on + strand at 40.726 kb on + strand at 40.726 kb on + strand at 40.726 kb on + strand at 40.726 kb on + strand at 40.726 kb on + strand at 40.727 kb on - strand at 40.751 kb on + strand at 40.752 kb on - strand at 40.754 kb on - strand at 40.754 kb on - strand at 40.774 kb on + strand at 40.848 kb on + strand at 40.852 kb on + strand at 40.858 kb on + strand at 40.903 kb on - strand at 40.903 kb on - strand at 40.906 kb on - strand at 40.912 kb on + strand at 40.913 kb on - strand at 40.913 kb on - strand at 40.915 kb on + strand at 40.915 kb on + strand at 40.935 kb on + strand at 40.935 kb on + strand at 40.983 kb on + strand at 40.983 kb on + strand at 40.983 kb on + strand at 40.983 kb on + strand at 41.015 kb on + strand at 41.037 kb on + strand at 41.038 kb on - strand at 41.256 kb on + strand, within EX31_RS00190 at 41.293 kb on + strand, within EX31_RS00190 at 41.293 kb on + strand, within EX31_RS00190 at 41.293 kb on + strand, within EX31_RS00190 at 41.293 kb on + strand, within EX31_RS00190 at 41.356 kb on - strand, within EX31_RS00190 at 41.379 kb on + strand at 41.379 kb on + strand at 41.563 kb on + strand at 41.564 kb on - strand at 41.564 kb on - strand at 41.568 kb on + strand at 41.574 kb on + strand at 41.574 kb on + strand at 41.575 kb on - strand at 41.575 kb on - strand at 41.575 kb on - strand at 41.575 kb on - strand at 41.575 kb on - strand at 41.575 kb on - strand at 41.575 kb on - strand at 41.575 kb on - strand at 41.585 kb on - strand at 41.585 kb on - strand at 41.585 kb on - strand at 41.585 kb on - strand at 41.589 kb on - strand at 41.589 kb on - strand at 41.621 kb on + strand at 41.622 kb on - strand at 41.651 kb on + strand at 41.651 kb on + strand at 41.652 kb on - strand at 41.678 kb on - strand, within EX31_RS00195 at 41.678 kb on - strand, within EX31_RS00195 at 41.683 kb on + strand, within EX31_RS00195 at 41.684 kb on - strand, within EX31_RS00195 at 41.691 kb on + strand, within EX31_RS00195 at 41.691 kb on + strand, within EX31_RS00195 at 41.691 kb on + strand, within EX31_RS00195 at 41.692 kb on - strand, within EX31_RS00195 at 41.692 kb on - strand, within EX31_RS00195 at 41.705 kb on + strand, within EX31_RS00195 at 41.705 kb on + strand, within EX31_RS00195 at 41.706 kb on - strand, within EX31_RS00195 at 41.707 kb on + strand, within EX31_RS00195 at 41.707 kb on + strand, within EX31_RS00195 at 41.707 kb on + strand, within EX31_RS00195 at 41.708 kb on - strand, within EX31_RS00195 at 41.708 kb on - strand, within EX31_RS00195 at 41.756 kb on + strand, within EX31_RS00195 at 41.786 kb on - strand, within EX31_RS00195 at 41.798 kb on + strand, within EX31_RS00195 at 41.798 kb on + strand, within EX31_RS00195 at 41.798 kb on + strand, within EX31_RS00195 at 41.799 kb on - strand, within EX31_RS00195 at 41.799 kb on - strand, within EX31_RS00195 at 41.799 kb on - strand, within EX31_RS00195 at 41.823 kb on + strand, within EX31_RS00195 at 41.823 kb on + strand, within EX31_RS00195 at 41.823 kb on + strand, within EX31_RS00195 at 41.824 kb on - strand, within EX31_RS00195 at 41.824 kb on - strand, within EX31_RS00195 at 41.824 kb on - strand, within EX31_RS00195 at 41.868 kb on + strand, within EX31_RS00195 at 41.869 kb on - strand, within EX31_RS00195 at 41.890 kb on + strand, within EX31_RS00195 at 41.890 kb on + strand, within EX31_RS00195 at 41.890 kb on + strand, within EX31_RS00195 at 41.890 kb on + strand, within EX31_RS00195 at 41.890 kb on + strand, within EX31_RS00195 at 41.891 kb on - strand, within EX31_RS00195 at 41.891 kb on - strand, within EX31_RS00195 at 41.891 kb on - strand, within EX31_RS00195 at 41.891 kb on - strand, within EX31_RS00195 at 41.894 kb on + strand, within EX31_RS00195 at 41.894 kb on + strand, within EX31_RS00195 at 41.894 kb on + strand, within EX31_RS00195 at 41.894 kb on + strand, within EX31_RS00195 at 41.894 kb on + strand, within EX31_RS00195 at 41.895 kb on - strand, within EX31_RS00195 at 41.895 kb on - strand, within EX31_RS00195 at 41.895 kb on - strand, within EX31_RS00195 at 41.895 kb on - strand, within EX31_RS00195 at 41.895 kb on - strand, within EX31_RS00195 at 41.895 kb on - strand, within EX31_RS00195 at 41.895 kb on - strand, within EX31_RS00195 at 41.896 kb on + strand, within EX31_RS00195 at 41.896 kb on + strand, within EX31_RS00195 at 41.896 kb on + strand, within EX31_RS00195 at 41.896 kb on + strand, within EX31_RS00195 at 41.897 kb on - strand, within EX31_RS00195 at 41.897 kb on - strand, within EX31_RS00195 at 41.897 kb on - strand, within EX31_RS00195 at 41.898 kb on + strand, within EX31_RS00195 at 41.898 kb on + strand, within EX31_RS00195 at 41.898 kb on + strand, within EX31_RS00195 at 41.899 kb on - strand, within EX31_RS00195 at 41.973 kb on - strand, within EX31_RS00195 at 41.981 kb on + strand, within EX31_RS00195 at 41.982 kb on - strand, within EX31_RS00195 at 41.982 kb on - strand, within EX31_RS00195 at 41.988 kb on - strand, within EX31_RS00195 at 41.988 kb on - strand, within EX31_RS00195 at 42.064 kb on - strand, within EX31_RS00195 at 42.064 kb on - strand, within EX31_RS00195 at 42.119 kb on + strand at 42.139 kb on + strand at 42.139 kb on + strand at 42.140 kb on - strand at 42.154 kb on - strand at 42.259 kb on - strand at 42.327 kb on - strand at 42.344 kb on + strand at 42.344 kb on + strand at 42.348 kb on + strand at 42.349 kb on - strand at 42.349 kb on - strand at 42.388 kb on + strand, within EX31_RS00200
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 40,056 + EX31_RS00185 0.54 +0.5 40,056 + EX31_RS00185 0.54 -0.3 40,056 + EX31_RS00185 0.54 -1.6 40,056 + EX31_RS00185 0.54 +0.4 40,056 + EX31_RS00185 0.54 +0.4 40,056 + EX31_RS00185 0.54 +0.5 40,056 + EX31_RS00185 0.54 +0.4 40,058 + EX31_RS00185 0.54 +0.1 40,087 + EX31_RS00185 0.57 -0.9 40,087 + EX31_RS00185 0.57 +0.5 40,087 + EX31_RS00185 0.57 -0.1 40,137 + EX31_RS00185 0.63 -0.0 40,233 + EX31_RS00185 0.74 -0.5 40,233 + EX31_RS00185 0.74 +0.3 40,233 + EX31_RS00185 0.74 +0.2 40,292 + EX31_RS00185 0.80 +0.2 40,292 + EX31_RS00185 0.80 -0.7 40,292 + EX31_RS00185 0.80 +0.1 40,292 + EX31_RS00185 0.80 +0.0 40,305 - EX31_RS00185 0.82 -0.6 40,351 - EX31_RS00185 0.87 -1.4 40,351 - EX31_RS00185 0.87 -0.1 40,539 - -0.8 40,539 - +0.4 40,542 + +0.7 40,543 - -0.7 40,662 - -0.0 40,667 + -1.4 40,667 + +0.3 40,668 - +1.1 40,712 - -1.5 40,715 + -1.0 40,716 - -0.6 40,718 + -0.2 40,725 + +1.2 40,726 + -0.3 40,726 + +0.6 40,726 + -1.6 40,726 + +0.2 40,726 + -0.1 40,727 - -1.1 40,751 + +0.4 40,752 - +1.2 40,754 - +0.5 40,754 - +0.6 40,774 + +0.1 40,848 + -1.1 40,852 + -1.2 40,858 + -1.6 40,903 - -0.4 40,903 - +0.5 40,906 - +0.5 40,912 + -0.1 40,913 - -0.0 40,913 - +0.6 40,915 + -1.7 40,915 + -1.0 40,935 + -0.7 40,935 + -0.0 40,983 + -0.6 40,983 + +2.4 40,983 + +0.0 40,983 + -0.4 41,015 + -1.0 41,037 + -0.2 41,038 - -0.4 41,256 + EX31_RS00190 0.62 +0.5 41,293 + EX31_RS00190 0.71 -0.5 41,293 + EX31_RS00190 0.71 +0.0 41,293 + EX31_RS00190 0.71 -0.8 41,293 + EX31_RS00190 0.71 -0.6 41,356 - EX31_RS00190 0.87 -0.3 41,379 + +0.1 41,379 + -1.7 41,563 + +0.1 41,564 - -0.4 41,564 - -1.4 41,568 + +0.2 41,574 + +0.5 41,574 + -0.4 41,575 - -1.3 41,575 - +0.6 41,575 - -1.4 41,575 - +0.2 41,575 - +0.4 41,575 - -0.1 41,575 - +0.0 41,575 - -0.1 41,585 - -0.6 41,585 - -1.7 41,585 - -0.2 41,585 - +0.7 41,589 - +0.6 41,589 - -0.5 41,621 + -0.8 41,622 - -0.4 41,651 + -1.3 41,651 + +1.5 41,652 - +0.5 41,678 - EX31_RS00195 0.10 -0.4 41,678 - EX31_RS00195 0.10 +0.6 41,683 + EX31_RS00195 0.11 +0.3 41,684 - EX31_RS00195 0.12 -0.6 41,691 + EX31_RS00195 0.13 -1.1 41,691 + EX31_RS00195 0.13 -1.0 41,691 + EX31_RS00195 0.13 +1.0 41,692 - EX31_RS00195 0.13 +1.2 41,692 - EX31_RS00195 0.13 +0.6 41,705 + EX31_RS00195 0.16 -0.0 41,705 + EX31_RS00195 0.16 -0.4 41,706 - EX31_RS00195 0.16 -2.5 41,707 + EX31_RS00195 0.16 +0.1 41,707 + EX31_RS00195 0.16 -0.1 41,707 + EX31_RS00195 0.16 -0.9 41,708 - EX31_RS00195 0.16 +0.3 41,708 - EX31_RS00195 0.16 +0.9 41,756 + EX31_RS00195 0.25 +0.3 41,786 - EX31_RS00195 0.31 +0.7 41,798 + EX31_RS00195 0.33 +0.2 41,798 + EX31_RS00195 0.33 -0.6 41,798 + EX31_RS00195 0.33 -0.3 41,799 - EX31_RS00195 0.33 +0.1 41,799 - EX31_RS00195 0.33 +0.0 41,799 - EX31_RS00195 0.33 -0.3 41,823 + EX31_RS00195 0.38 +0.5 41,823 + EX31_RS00195 0.38 +1.0 41,823 + EX31_RS00195 0.38 -0.1 41,824 - EX31_RS00195 0.38 +0.9 41,824 - EX31_RS00195 0.38 -0.2 41,824 - EX31_RS00195 0.38 +0.1 41,868 + EX31_RS00195 0.46 +1.4 41,869 - EX31_RS00195 0.46 +1.3 41,890 + EX31_RS00195 0.50 -0.3 41,890 + EX31_RS00195 0.50 -0.1 41,890 + EX31_RS00195 0.50 +0.3 41,890 + EX31_RS00195 0.50 +0.9 41,890 + EX31_RS00195 0.50 -0.4 41,891 - EX31_RS00195 0.50 -0.6 41,891 - EX31_RS00195 0.50 -0.2 41,891 - EX31_RS00195 0.50 -0.8 41,891 - EX31_RS00195 0.50 -0.0 41,894 + EX31_RS00195 0.51 +0.5 41,894 + EX31_RS00195 0.51 +0.2 41,894 + EX31_RS00195 0.51 -0.6 41,894 + EX31_RS00195 0.51 +0.4 41,894 + EX31_RS00195 0.51 +0.1 41,895 - EX31_RS00195 0.51 +0.9 41,895 - EX31_RS00195 0.51 -0.6 41,895 - EX31_RS00195 0.51 -1.5 41,895 - EX31_RS00195 0.51 +0.2 41,895 - EX31_RS00195 0.51 -1.2 41,895 - EX31_RS00195 0.51 +0.1 41,895 - EX31_RS00195 0.51 +0.4 41,896 + EX31_RS00195 0.51 +0.6 41,896 + EX31_RS00195 0.51 -0.7 41,896 + EX31_RS00195 0.51 -0.3 41,896 + EX31_RS00195 0.51 -0.3 41,897 - EX31_RS00195 0.51 +0.4 41,897 - EX31_RS00195 0.51 +0.7 41,897 - EX31_RS00195 0.51 -0.3 41,898 + EX31_RS00195 0.52 -0.2 41,898 + EX31_RS00195 0.52 -0.0 41,898 + EX31_RS00195 0.52 -0.1 41,899 - EX31_RS00195 0.52 -1.3 41,973 - EX31_RS00195 0.66 +0.8 41,981 + EX31_RS00195 0.67 -1.7 41,982 - EX31_RS00195 0.67 +0.9 41,982 - EX31_RS00195 0.67 +0.2 41,988 - EX31_RS00195 0.69 -0.1 41,988 - EX31_RS00195 0.69 +1.2 42,064 - EX31_RS00195 0.83 -0.3 42,064 - EX31_RS00195 0.83 -1.0 42,119 + -0.7 42,139 + -0.7 42,139 + +0.1 42,140 - -0.1 42,154 - -1.1 42,259 - +0.4 42,327 - -0.9 42,344 + -0.2 42,344 + -0.6 42,348 + -1.6 42,349 - -0.7 42,349 - +0.2 42,388 + EX31_RS00200 0.15 +0.2
Or see this region's nucleotide sequence