Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22060 and EX31_RS22065 are separated by 444 nucleotides EX31_RS22065 and EX31_RS22070 are separated by 156 nucleotides
EX31_RS22060: EX31_RS22060 - cobalamin-independent methionine synthase II family protein, at 158,517 to 159,620
_RS22060
EX31_RS22065: EX31_RS22065 - branched-chain amino acid transport system II carrier protein, at 160,065 to 161,384
_RS22065
EX31_RS22070: EX31_RS22070 - proline-specific permease ProY, at 161,541 to 162,971
_RS22070
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2 at 159.099 kb on + strand, within EX31_RS22060 at 159.160 kb on + strand, within EX31_RS22060 at 159.167 kb on + strand, within EX31_RS22060 at 159.167 kb on + strand, within EX31_RS22060 at 159.171 kb on + strand, within EX31_RS22060 at 159.172 kb on - strand, within EX31_RS22060 at 159.172 kb on - strand, within EX31_RS22060 at 159.381 kb on - strand, within EX31_RS22060 at 159.384 kb on - strand, within EX31_RS22060 at 159.486 kb on + strand, within EX31_RS22060 at 159.487 kb on - strand, within EX31_RS22060 at 159.650 kb on + strand at 159.650 kb on + strand at 159.651 kb on - strand at 159.651 kb on - strand at 159.651 kb on - strand at 159.654 kb on + strand at 159.654 kb on + strand at 159.654 kb on + strand at 159.654 kb on + strand at 159.655 kb on - strand at 159.723 kb on + strand at 159.723 kb on + strand at 159.724 kb on - strand at 159.724 kb on - strand at 159.724 kb on - strand at 159.738 kb on + strand at 159.738 kb on + strand at 159.739 kb on - strand at 159.753 kb on - strand at 159.753 kb on - strand at 159.756 kb on + strand at 159.756 kb on + strand at 159.756 kb on + strand at 159.757 kb on - strand at 159.780 kb on + strand at 159.791 kb on + strand at 159.791 kb on + strand at 159.791 kb on + strand at 159.791 kb on + strand at 159.792 kb on - strand at 159.792 kb on - strand at 159.804 kb on + strand at 159.805 kb on - strand at 159.805 kb on - strand at 159.810 kb on + strand at 159.855 kb on + strand at 159.856 kb on - strand at 159.856 kb on - strand at 159.856 kb on - strand at 159.862 kb on + strand at 159.863 kb on - strand at 159.914 kb on + strand at 159.914 kb on + strand at 159.914 kb on + strand at 159.915 kb on - strand at 159.915 kb on - strand at 159.927 kb on - strand at 159.927 kb on - strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.980 kb on + strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.981 kb on - strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.982 kb on + strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 159.983 kb on - strand at 160.033 kb on + strand at 160.033 kb on + strand at 160.033 kb on + strand at 160.033 kb on + strand at 160.033 kb on + strand at 160.070 kb on + strand at 160.070 kb on + strand at 160.070 kb on + strand at 160.071 kb on - strand at 160.071 kb on - strand at 160.085 kb on + strand at 160.086 kb on - strand at 160.086 kb on - strand at 160.091 kb on + strand at 160.208 kb on + strand, within EX31_RS22065 at 160.209 kb on - strand, within EX31_RS22065 at 160.243 kb on + strand, within EX31_RS22065 at 160.243 kb on + strand, within EX31_RS22065 at 160.286 kb on + strand, within EX31_RS22065 at 160.310 kb on + strand, within EX31_RS22065 at 160.437 kb on + strand, within EX31_RS22065 at 160.438 kb on - strand, within EX31_RS22065 at 160.449 kb on + strand, within EX31_RS22065 at 160.450 kb on - strand, within EX31_RS22065 at 160.499 kb on + strand, within EX31_RS22065 at 160.565 kb on - strand, within EX31_RS22065 at 160.606 kb on - strand, within EX31_RS22065 at 160.658 kb on + strand, within EX31_RS22065 at 160.743 kb on + strand, within EX31_RS22065 at 160.745 kb on + strand, within EX31_RS22065 at 160.746 kb on - strand, within EX31_RS22065 at 160.746 kb on - strand, within EX31_RS22065 at 160.791 kb on + strand, within EX31_RS22065 at 160.872 kb on + strand, within EX31_RS22065 at 160.872 kb on + strand, within EX31_RS22065 at 160.872 kb on + strand, within EX31_RS22065 at 160.872 kb on + strand, within EX31_RS22065 at 160.872 kb on + strand, within EX31_RS22065 at 160.872 kb on + strand, within EX31_RS22065 at 160.872 kb on + strand, within EX31_RS22065 at 160.872 kb on + strand, within EX31_RS22065 at 160.873 kb on - strand, within EX31_RS22065 at 160.873 kb on - strand, within EX31_RS22065 at 160.873 kb on - strand, within EX31_RS22065 at 160.873 kb on - strand, within EX31_RS22065 at 160.873 kb on - strand, within EX31_RS22065 at 160.873 kb on - strand, within EX31_RS22065 at 160.883 kb on + strand, within EX31_RS22065 at 160.883 kb on + strand, within EX31_RS22065 at 160.883 kb on + strand, within EX31_RS22065 at 160.883 kb on + strand, within EX31_RS22065 at 160.883 kb on + strand, within EX31_RS22065 at 160.883 kb on + strand, within EX31_RS22065 at 160.883 kb on + strand, within EX31_RS22065 at 160.883 kb on + strand, within EX31_RS22065 at 160.884 kb on - strand, within EX31_RS22065 at 160.884 kb on - strand, within EX31_RS22065 at 160.884 kb on - strand, within EX31_RS22065 at 160.884 kb on - strand, within EX31_RS22065 at 160.884 kb on - strand, within EX31_RS22065 at 160.884 kb on - strand, within EX31_RS22065 at 160.990 kb on - strand, within EX31_RS22065 at 161.004 kb on + strand, within EX31_RS22065 at 161.004 kb on + strand, within EX31_RS22065 at 161.004 kb on + strand, within EX31_RS22065 at 161.005 kb on - strand, within EX31_RS22065 at 161.117 kb on + strand, within EX31_RS22065 at 161.117 kb on + strand, within EX31_RS22065 at 161.117 kb on + strand, within EX31_RS22065 at 161.117 kb on + strand, within EX31_RS22065 at 161.118 kb on - strand, within EX31_RS22065 at 161.118 kb on - strand, within EX31_RS22065 at 161.194 kb on + strand, within EX31_RS22065 at 161.194 kb on + strand, within EX31_RS22065 at 161.317 kb on + strand at 161.317 kb on + strand at 161.317 kb on + strand at 161.340 kb on + strand at 161.340 kb on + strand at 161.341 kb on - strand at 161.341 kb on - strand at 161.368 kb on + strand at 161.409 kb on + strand at 161.409 kb on + strand at 161.409 kb on + strand at 161.410 kb on - strand at 161.410 kb on - strand at 161.410 kb on - strand at 161.487 kb on - strand at 161.487 kb on - strand at 161.517 kb on + strand at 161.521 kb on + strand at 161.521 kb on + strand at 161.539 kb on + strand at 161.572 kb on + strand at 161.602 kb on + strand at 161.602 kb on + strand at 161.602 kb on + strand at 161.602 kb on + strand at 161.636 kb on + strand at 161.637 kb on - strand at 161.674 kb on - strand at 161.693 kb on + strand, within EX31_RS22070 at 161.713 kb on + strand, within EX31_RS22070 at 161.713 kb on + strand, within EX31_RS22070 at 161.750 kb on + strand, within EX31_RS22070 at 161.751 kb on - strand, within EX31_RS22070 at 161.751 kb on - strand, within EX31_RS22070 at 161.814 kb on + strand, within EX31_RS22070 at 161.826 kb on + strand, within EX31_RS22070 at 161.827 kb on - strand, within EX31_RS22070 at 161.827 kb on - strand, within EX31_RS22070 at 161.848 kb on - strand, within EX31_RS22070 at 161.865 kb on + strand, within EX31_RS22070 at 161.865 kb on + strand, within EX31_RS22070 at 161.866 kb on - strand, within EX31_RS22070 at 161.902 kb on + strand, within EX31_RS22070 at 161.902 kb on + strand, within EX31_RS22070 at 161.919 kb on + strand, within EX31_RS22070 at 161.919 kb on + strand, within EX31_RS22070 at 161.919 kb on + strand, within EX31_RS22070 at 161.919 kb on + strand, within EX31_RS22070 at 161.919 kb on + strand, within EX31_RS22070 at 161.919 kb on + strand, within EX31_RS22070 at 161.919 kb on + strand, within EX31_RS22070 at 161.919 kb on + strand, within EX31_RS22070 at 161.919 kb on + strand, within EX31_RS22070 at 161.920 kb on - strand, within EX31_RS22070 at 161.920 kb on - strand, within EX31_RS22070 at 161.920 kb on - strand, within EX31_RS22070 at 161.920 kb on - strand, within EX31_RS22070 at 161.921 kb on + strand, within EX31_RS22070 at 161.921 kb on + strand, within EX31_RS22070 at 161.921 kb on + strand, within EX31_RS22070 at 161.922 kb on - strand, within EX31_RS22070 at 162.047 kb on + strand, within EX31_RS22070 at 162.093 kb on - strand, within EX31_RS22070 at 162.196 kb on + strand, within EX31_RS22070 at 162.196 kb on + strand, within EX31_RS22070 at 162.197 kb on - strand, within EX31_RS22070 at 162.298 kb on + strand, within EX31_RS22070 at 162.316 kb on + strand, within EX31_RS22070 at 162.317 kb on - strand, within EX31_RS22070 at 162.321 kb on + strand, within EX31_RS22070 at 162.321 kb on + strand, within EX31_RS22070 at 162.321 kb on + strand, within EX31_RS22070 at 162.321 kb on + strand, within EX31_RS22070 at 162.321 kb on + strand, within EX31_RS22070 at 162.321 kb on + strand, within EX31_RS22070 at 162.321 kb on + strand, within EX31_RS22070 at 162.321 kb on + strand, within EX31_RS22070 at 162.321 kb on + strand, within EX31_RS22070 at 162.322 kb on - strand, within EX31_RS22070 at 162.322 kb on - strand, within EX31_RS22070 at 162.322 kb on - strand, within EX31_RS22070 at 162.322 kb on - strand, within EX31_RS22070 at 162.329 kb on + strand, within EX31_RS22070 at 162.329 kb on + strand, within EX31_RS22070 at 162.351 kb on - strand, within EX31_RS22070
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 159,099 + EX31_RS22060 0.53 -0.4 159,160 + EX31_RS22060 0.58 -0.2 159,167 + EX31_RS22060 0.59 -0.2 159,167 + EX31_RS22060 0.59 -1.4 159,171 + EX31_RS22060 0.59 -1.5 159,172 - EX31_RS22060 0.59 +0.2 159,172 - EX31_RS22060 0.59 +0.2 159,381 - EX31_RS22060 0.78 -0.3 159,384 - EX31_RS22060 0.79 +0.3 159,486 + EX31_RS22060 0.88 +0.4 159,487 - EX31_RS22060 0.88 +0.5 159,650 + -0.2 159,650 + +1.1 159,651 - +0.6 159,651 - +0.1 159,651 - -1.0 159,654 + +1.4 159,654 + -0.0 159,654 + -0.0 159,654 + +0.1 159,655 - -1.7 159,723 + -1.1 159,723 + -1.2 159,724 - -1.7 159,724 - +1.8 159,724 - -0.7 159,738 + -0.6 159,738 + -0.2 159,739 - -0.3 159,753 - -0.3 159,753 - +0.6 159,756 + -0.7 159,756 + -1.2 159,756 + -1.6 159,757 - -0.1 159,780 + -0.2 159,791 + +0.6 159,791 + -0.5 159,791 + -0.4 159,791 + -0.9 159,792 - +0.3 159,792 - -0.2 159,804 + +0.1 159,805 - +0.4 159,805 - +1.5 159,810 + -0.6 159,855 + +0.2 159,856 - -0.5 159,856 - +0.5 159,856 - -1.3 159,862 + +0.3 159,863 - -0.3 159,914 + +1.1 159,914 + -0.3 159,914 + -0.5 159,915 - +0.4 159,915 - +0.2 159,927 - -0.6 159,927 - +0.9 159,980 + -0.4 159,980 + +0.4 159,980 + -1.4 159,980 + -1.2 159,980 + -1.1 159,980 + -0.0 159,980 + -1.2 159,980 + -0.3 159,981 - -1.0 159,981 - -0.9 159,981 - -0.6 159,981 - +0.3 159,981 - -0.3 159,981 - +0.1 159,981 - +0.2 159,981 - +0.1 159,981 - -0.5 159,981 - +0.3 159,982 + -0.4 159,982 + +0.3 159,982 + +0.1 159,982 + -0.5 159,982 + -0.1 159,982 + +1.4 159,982 + +0.6 159,982 + +1.2 159,982 + -0.4 159,982 + -0.3 159,982 + -0.3 159,982 + -0.8 159,982 + -0.8 159,982 + -0.7 159,982 + +0.4 159,983 - +0.4 159,983 - -0.5 159,983 - -0.7 159,983 - -0.9 159,983 - +1.1 159,983 - +0.1 159,983 - -0.1 159,983 - +0.1 160,033 + -0.8 160,033 + -0.3 160,033 + -0.1 160,033 + -0.2 160,033 + +0.2 160,070 + +0.6 160,070 + +1.1 160,070 + +1.0 160,071 - +0.2 160,071 - -0.1 160,085 + +0.0 160,086 - -0.2 160,086 - +0.1 160,091 + -0.3 160,208 + EX31_RS22065 0.11 -0.4 160,209 - EX31_RS22065 0.11 +0.8 160,243 + EX31_RS22065 0.13 -0.5 160,243 + EX31_RS22065 0.13 +2.2 160,286 + EX31_RS22065 0.17 +0.0 160,310 + EX31_RS22065 0.19 -0.6 160,437 + EX31_RS22065 0.28 -0.4 160,438 - EX31_RS22065 0.28 -0.0 160,449 + EX31_RS22065 0.29 +0.1 160,450 - EX31_RS22065 0.29 +0.2 160,499 + EX31_RS22065 0.33 +0.4 160,565 - EX31_RS22065 0.38 -0.2 160,606 - EX31_RS22065 0.41 +0.1 160,658 + EX31_RS22065 0.45 -1.4 160,743 + EX31_RS22065 0.51 +0.2 160,745 + EX31_RS22065 0.52 -0.3 160,746 - EX31_RS22065 0.52 -1.5 160,746 - EX31_RS22065 0.52 -0.2 160,791 + EX31_RS22065 0.55 +0.0 160,872 + EX31_RS22065 0.61 +0.3 160,872 + EX31_RS22065 0.61 -0.8 160,872 + EX31_RS22065 0.61 +0.4 160,872 + EX31_RS22065 0.61 +1.1 160,872 + EX31_RS22065 0.61 +0.3 160,872 + EX31_RS22065 0.61 -0.4 160,872 + EX31_RS22065 0.61 -0.0 160,872 + EX31_RS22065 0.61 +1.0 160,873 - EX31_RS22065 0.61 -0.6 160,873 - EX31_RS22065 0.61 -1.3 160,873 - EX31_RS22065 0.61 -1.4 160,873 - EX31_RS22065 0.61 -0.2 160,873 - EX31_RS22065 0.61 -0.3 160,873 - EX31_RS22065 0.61 -0.4 160,883 + EX31_RS22065 0.62 -0.0 160,883 + EX31_RS22065 0.62 +0.5 160,883 + EX31_RS22065 0.62 -0.1 160,883 + EX31_RS22065 0.62 -0.4 160,883 + EX31_RS22065 0.62 -0.7 160,883 + EX31_RS22065 0.62 +0.2 160,883 + EX31_RS22065 0.62 -1.7 160,883 + EX31_RS22065 0.62 +0.0 160,884 - EX31_RS22065 0.62 +0.0 160,884 - EX31_RS22065 0.62 -1.5 160,884 - EX31_RS22065 0.62 +0.0 160,884 - EX31_RS22065 0.62 -0.9 160,884 - EX31_RS22065 0.62 -0.5 160,884 - EX31_RS22065 0.62 -0.1 160,990 - EX31_RS22065 0.70 -0.2 161,004 + EX31_RS22065 0.71 -0.7 161,004 + EX31_RS22065 0.71 -0.5 161,004 + EX31_RS22065 0.71 -0.0 161,005 - EX31_RS22065 0.71 -0.7 161,117 + EX31_RS22065 0.80 -1.9 161,117 + EX31_RS22065 0.80 +1.3 161,117 + EX31_RS22065 0.80 +0.7 161,117 + EX31_RS22065 0.80 -0.2 161,118 - EX31_RS22065 0.80 +0.2 161,118 - EX31_RS22065 0.80 +0.1 161,194 + EX31_RS22065 0.86 -0.7 161,194 + EX31_RS22065 0.86 -1.5 161,317 + +0.1 161,317 + +0.3 161,317 + -0.3 161,340 + +0.6 161,340 + -0.6 161,341 - -0.4 161,341 - -0.5 161,368 + +0.2 161,409 + +0.6 161,409 + -0.1 161,409 + -0.4 161,410 - -0.8 161,410 - +0.1 161,410 - -0.7 161,487 - -0.9 161,487 - +1.0 161,517 + +0.5 161,521 + -0.8 161,521 + -0.1 161,539 + -0.2 161,572 + -0.3 161,602 + -0.5 161,602 + -0.6 161,602 + -0.9 161,602 + +0.1 161,636 + +0.2 161,637 - +1.1 161,674 - -0.0 161,693 + EX31_RS22070 0.11 -0.7 161,713 + EX31_RS22070 0.12 -0.4 161,713 + EX31_RS22070 0.12 +0.0 161,750 + EX31_RS22070 0.15 +0.8 161,751 - EX31_RS22070 0.15 -0.2 161,751 - EX31_RS22070 0.15 -0.1 161,814 + EX31_RS22070 0.19 +1.3 161,826 + EX31_RS22070 0.20 +0.9 161,827 - EX31_RS22070 0.20 -0.6 161,827 - EX31_RS22070 0.20 -2.0 161,848 - EX31_RS22070 0.21 +0.5 161,865 + EX31_RS22070 0.23 +0.1 161,865 + EX31_RS22070 0.23 -1.5 161,866 - EX31_RS22070 0.23 -0.1 161,902 + EX31_RS22070 0.25 -0.1 161,902 + EX31_RS22070 0.25 -0.2 161,919 + EX31_RS22070 0.26 -0.8 161,919 + EX31_RS22070 0.26 +0.3 161,919 + EX31_RS22070 0.26 -0.6 161,919 + EX31_RS22070 0.26 +0.2 161,919 + EX31_RS22070 0.26 -0.2 161,919 + EX31_RS22070 0.26 -1.0 161,919 + EX31_RS22070 0.26 +0.6 161,919 + EX31_RS22070 0.26 +0.8 161,919 + EX31_RS22070 0.26 -0.5 161,920 - EX31_RS22070 0.26 -1.7 161,920 - EX31_RS22070 0.26 -0.3 161,920 - EX31_RS22070 0.26 +0.4 161,920 - EX31_RS22070 0.26 -0.9 161,921 + EX31_RS22070 0.27 +0.0 161,921 + EX31_RS22070 0.27 -0.9 161,921 + EX31_RS22070 0.27 +0.3 161,922 - EX31_RS22070 0.27 -2.2 162,047 + EX31_RS22070 0.35 -0.5 162,093 - EX31_RS22070 0.39 -0.4 162,196 + EX31_RS22070 0.46 -1.6 162,196 + EX31_RS22070 0.46 -0.6 162,197 - EX31_RS22070 0.46 +1.1 162,298 + EX31_RS22070 0.53 -0.2 162,316 + EX31_RS22070 0.54 -0.6 162,317 - EX31_RS22070 0.54 +0.4 162,321 + EX31_RS22070 0.55 +0.7 162,321 + EX31_RS22070 0.55 -0.1 162,321 + EX31_RS22070 0.55 -0.8 162,321 + EX31_RS22070 0.55 -1.3 162,321 + EX31_RS22070 0.55 -0.3 162,321 + EX31_RS22070 0.55 +0.5 162,321 + EX31_RS22070 0.55 -0.7 162,321 + EX31_RS22070 0.55 -0.6 162,321 + EX31_RS22070 0.55 -1.1 162,322 - EX31_RS22070 0.55 -0.5 162,322 - EX31_RS22070 0.55 -2.2 162,322 - EX31_RS22070 0.55 +0.0 162,322 - EX31_RS22070 0.55 -0.3 162,329 + EX31_RS22070 0.55 -1.5 162,329 + EX31_RS22070 0.55 -1.7 162,351 - EX31_RS22070 0.57 -1.8
Or see this region's nucleotide sequence