Strain Fitness in Rahnella sp. WP5

Strain Fitness in Rahnella sp. WP5 around EX31_RS15040

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM; ambient oxygen
				remove
22,588	+	EX31_RS15035	0.36	-0.1
22,588	+	EX31_RS15035	0.36	+0.7
22,604	+	EX31_RS15035	0.37	-2.4
22,605	-	EX31_RS15035	0.37	-0.2
22,605	-	EX31_RS15035	0.37	+0.2
22,625	+	EX31_RS15035	0.38	+0.0
22,625	+	EX31_RS15035	0.38	+0.2
22,736	+	EX31_RS15035	0.46	-0.0
23,035	+	EX31_RS15035	0.66	+1.1
23,035	+	EX31_RS15035	0.66	-0.5
23,035	+	EX31_RS15035	0.66	-0.2
23,036	-	EX31_RS15035	0.66	+0.3
23,036	-	EX31_RS15035	0.66	+1.0
23,036	-	EX31_RS15035	0.66	+0.5
23,036	-	EX31_RS15035	0.66	+0.3
23,072	+	EX31_RS15035	0.68	+0.1
23,073	-	EX31_RS15035	0.68	+0.8
23,074	+	EX31_RS15035	0.68	+0.8
23,075	-	EX31_RS15035	0.68	+0.0
23,132	+	EX31_RS15035	0.72	-2.6
23,150	+	EX31_RS15035	0.73	-1.3
23,151	-	EX31_RS15035	0.73	+0.1
23,186	-	EX31_RS15035	0.76	-0.2
23,349	+	EX31_RS15035	0.87	+0.4
23,438	+			+0.6
23,438	+			-0.4
23,459	+			-0.3
23,524	+			-0.6
23,524	+			-0.0
23,524	+			-0.6
23,524	+			+0.3
23,524	+			+1.5
23,524	+			-0.4
23,525	-			+0.9
23,525	-			+1.0
23,525	-			+0.8
23,541	+			+0.1
23,541	+			-0.5
23,541	+			+1.8
23,541	+			-0.1
23,542	-			+0.8
23,542	-			+0.4
23,542	-			+1.0
23,546	+			-0.2
23,546	+			-0.9
23,546	+			+0.7
23,546	+			+0.8
23,546	+			+0.1
23,546	+			-0.5
23,546	+			+0.5
23,546	+			+0.5
23,546	+			+0.7
23,546	+			-2.4
23,546	+			-0.3
23,546	+			-1.1
23,546	+			-1.4
23,546	+			-0.5
23,546	+			-0.5
23,546	+			+0.6
23,546	+			-0.7
23,546	+			-1.0
23,546	+			-0.4
23,546	+			+1.6
23,546	+			+0.3
23,546	+			+0.3
23,546	+			-1.2
23,546	+			-1.5
23,546	+			+0.2
23,546	+			+0.4
23,546	+			+1.1
23,546	+			-0.9
23,546	+			-0.3
23,546	+			+0.3
23,546	+			+0.5
23,546	+			-0.5
23,546	+			+0.1
23,546	+			+0.4
23,546	+			-0.5
23,546	+			-0.3
23,546	+			-1.1
23,546	+			-0.2
23,547	-			+0.3
23,547	-			+1.0
23,547	-			+1.0
23,547	-			+0.8
23,547	-			+0.4
23,547	-			+0.7
23,547	-			+1.3
23,547	-			+1.1
23,547	-			+0.6
23,547	-			+0.2
23,547	-			+0.7
23,547	-			+0.2
23,547	-			+0.8
23,547	-			+0.9
23,547	-			-0.4
23,547	-			+1.0
23,547	-			+0.7
23,547	-			+0.3
23,547	-			+1.2
23,547	-			+0.4
23,547	-			+0.7
23,547	-			+0.4
23,547	-			+0.9
23,547	-			+1.0
23,547	-			+0.5
23,547	-			+0.5
23,547	-			+0.6
23,547	-			+1.0
23,547	-			+0.1
23,547	-			+0.3
23,547	-			+0.1
23,547	-			+0.7
23,547	-			+1.0
23,547	-			+0.4
23,547	-			+1.2
23,547	-			+0.8
23,547	-			+0.2
23,547	-			+0.5
23,547	-			+0.6
23,547	-			+0.9
23,547	-			+0.7
23,567	+			-0.4
23,567	+			-0.1
23,568	-			+1.3
23,576	+			+0.5
23,576	+			-0.6
23,576	+			-0.3
23,576	+			-0.6
23,576	+			+0.7
23,576	+			-0.4
23,577	-			+0.6
23,577	-			+0.6
23,577	-			-0.4
23,577	-			+1.1
23,577	-			+0.8
23,577	-			+0.6
23,577	-			-0.1
23,577	-			+0.1
23,577	-			+0.6
23,577	-			+0.7
23,609	+			+0.2
23,609	+			-0.0
23,610	-			-0.1
23,610	-			+0.8
23,610	-			+0.7
23,676	+			-0.5
23,676	+			-0.7
23,677	-			+0.6
23,695	+	EX31_RS15040	0.11	-0.1
23,695	+	EX31_RS15040	0.11	-0.0
23,695	+	EX31_RS15040	0.11	+0.8
23,695	+	EX31_RS15040	0.11	+0.2
23,695	+	EX31_RS15040	0.11	-0.6
23,696	-	EX31_RS15040	0.11	+0.1
23,700	-	EX31_RS15040	0.11	+0.3
23,700	-	EX31_RS15040	0.11	-0.2
23,700	-	EX31_RS15040	0.11	-0.0
23,700	-	EX31_RS15040	0.11	+0.2
23,725	+	EX31_RS15040	0.13	+1.3
23,725	+	EX31_RS15040	0.13	+0.3
23,725	+	EX31_RS15040	0.13	-0.5
23,726	-	EX31_RS15040	0.13	+0.5
23,726	-	EX31_RS15040	0.13	+1.1
23,726	-	EX31_RS15040	0.13	+0.2
23,726	-	EX31_RS15040	0.13	+0.9
23,726	-	EX31_RS15040	0.13	-0.1
23,734	-	EX31_RS15040	0.14	+0.9
23,756	-	EX31_RS15040	0.16	-0.2
23,827	+	EX31_RS15040	0.21	-0.3
23,827	+	EX31_RS15040	0.21	-0.0
23,827	+	EX31_RS15040	0.21	-1.9
23,854	+	EX31_RS15040	0.23	-0.5
23,854	+	EX31_RS15040	0.23	-0.3
23,854	+	EX31_RS15040	0.23	-0.6
23,855	-	EX31_RS15040	0.23	+0.5
23,855	-	EX31_RS15040	0.23	+0.2
23,855	-	EX31_RS15040	0.23	-0.2
23,855	-	EX31_RS15040	0.23	+0.9
23,855	-	EX31_RS15040	0.23	-0.3
23,855	-	EX31_RS15040	0.23	+0.6
23,855	-	EX31_RS15040	0.23	+0.4
23,859	-	EX31_RS15040	0.24	-0.4
23,859	-	EX31_RS15040	0.24	-0.1
23,859	-	EX31_RS15040	0.24	+0.8
23,859	-	EX31_RS15040	0.24	+0.3
24,105	+	EX31_RS15040	0.43	-1.1
24,105	+	EX31_RS15040	0.43	+0.1
24,106	-	EX31_RS15040	0.43	+0.9
24,137	-	EX31_RS15040	0.45	+0.3
24,137	-	EX31_RS15040	0.45	+0.8
24,203	+	EX31_RS15040	0.50	-1.1
24,204	-	EX31_RS15040	0.50	+0.7
24,204	-	EX31_RS15040	0.50	+1.3
24,278	+	EX31_RS15040	0.56	-0.2
24,279	-	EX31_RS15040	0.56	+1.1
24,279	-	EX31_RS15040	0.56	+0.6
24,312	-	EX31_RS15040	0.59	+0.7
24,338	+	EX31_RS15040	0.61	-0.5
24,338	+	EX31_RS15040	0.61	-0.3
24,338	+	EX31_RS15040	0.61	-0.3
24,339	-	EX31_RS15040	0.61	+0.3
24,339	-	EX31_RS15040	0.61	+0.1
24,339	-	EX31_RS15040	0.61	-0.1
24,339	-	EX31_RS15040	0.61	-0.1
24,339	-	EX31_RS15040	0.61	+0.4
24,339	-	EX31_RS15040	0.61	+0.7
24,339	-	EX31_RS15040	0.61	+0.4
24,339	-	EX31_RS15040	0.61	+0.2
24,339	-	EX31_RS15040	0.61	+0.6
24,339	-	EX31_RS15040	0.61	-0.5
24,339	-	EX31_RS15040	0.61	+0.3
24,339	-	EX31_RS15040	0.61	+0.6
24,358	-	EX31_RS15040	0.62	+0.4
24,358	-	EX31_RS15040	0.62	+0.1
24,398	+	EX31_RS15040	0.65	-1.4
24,399	-	EX31_RS15040	0.65	+0.6
24,399	-	EX31_RS15040	0.65	-0.1
24,403	+	EX31_RS15040	0.66	-0.3
24,404	-	EX31_RS15040	0.66	+0.6
24,404	-	EX31_RS15040	0.66	-1.8
24,404	-	EX31_RS15040	0.66	+0.6
24,461	+	EX31_RS15040	0.70	-0.0
24,461	+	EX31_RS15040	0.70	+1.6
24,461	+	EX31_RS15040	0.70	+0.0
24,462	-	EX31_RS15040	0.70	+1.0
24,462	-	EX31_RS15040	0.70	+0.3
24,476	-	EX31_RS15040	0.71	+0.5
24,501	+	EX31_RS15040	0.73	+0.3
24,502	-	EX31_RS15040	0.73	+0.2
24,515	+	EX31_RS15040	0.74	-0.8
24,525	+	EX31_RS15040	0.75	-0.7
24,525	+	EX31_RS15040	0.75	+0.6
24,525	+	EX31_RS15040	0.75	+0.3
24,526	-	EX31_RS15040	0.75	+1.0
24,526	-	EX31_RS15040	0.75	+0.8
24,526	-	EX31_RS15040	0.75	+0.9
24,569	+	EX31_RS15040	0.79	+0.8
24,570	-	EX31_RS15040	0.79	+0.3
24,570	-	EX31_RS15040	0.79	+1.5
24,570	-	EX31_RS15040	0.79	-0.4
24,570	-	EX31_RS15040	0.79	-0.5
24,638	-	EX31_RS15040	0.84	+0.1
24,638	-	EX31_RS15040	0.84	-0.1
24,647	+	EX31_RS15040	0.85	+0.1
24,648	-	EX31_RS15040	0.85	-0.0
24,648	-	EX31_RS15040	0.85	+0.3
24,648	-	EX31_RS15040	0.85	+0.1
24,655	-	EX31_RS15040	0.85	-0.0
24,749	+			+0.7
24,749	+			-0.5
24,750	-			+0.5
24,750	-			-0.0
24,750	-			+0.6
24,750	-			+0.7
24,755	-			+0.3
24,784	-			+1.1
24,784	-			+0.3
24,845	+			-0.1
24,845	+			+0.5
24,845	+			+0.6
24,845	+			+2.0
24,845	+			+0.1
24,846	-			+0.6
24,846	-			+0.3
24,854	-			-0.0
24,858	+			+0.2
24,858	+			+1.7
24,859	-			+0.6
24,859	-			+0.1
24,865	+			+0.7
24,865	+			+0.5
24,869	+			+0.4
24,869	+			+0.6
24,869	+			+1.2
24,869	+			+1.1
24,869	+			+0.9
24,869	+			+2.0
24,869	+			+1.0
24,869	+			+0.2
24,869	+			+0.7
24,869	+			+1.3
24,870	-			-0.2
24,870	-			-0.4
24,877	+			+0.1
24,877	+			+1.1
24,899	+			+1.0
24,921	-			+0.9
24,926	+			+0.4
24,926	+			+0.0
24,926	+			+1.1
24,926	+			+0.7
24,926	+			+1.0
24,926	+			+0.8
24,926	+			+0.5
24,926	+			+0.8
24,927	-			-0.6
24,927	-			+0.2
24,927	-			-1.0
24,927	-			-0.1
24,927	-			-0.3
24,939	+			+1.4
24,945	+			+1.2
24,945	+			+0.8
24,946	-			-0.4
24,972	-			-0.9
24,977	+			+0.6
24,977	+			+0.6
25,012	+	EX31_RS15045	0.15	+1.3
25,012	+	EX31_RS15045	0.15	+0.8
25,070	+	EX31_RS15045	0.33	+0.4
25,070	+	EX31_RS15045	0.33	+0.8
25,070	+	EX31_RS15045	0.33	+1.4
25,070	+	EX31_RS15045	0.33	+1.2
25,070	+	EX31_RS15045	0.33	+0.3
25,070	+	EX31_RS15045	0.33	+0.6
25,070	+	EX31_RS15045	0.33	+1.0
25,070	+	EX31_RS15045	0.33	+0.6
25,070	+	EX31_RS15045	0.33	+1.0
25,070	+	EX31_RS15045	0.33	+0.7
25,070	+	EX31_RS15045	0.33	+1.5
25,070	+	EX31_RS15045	0.33	+1.2
25,070	+	EX31_RS15045	0.33	-0.0
25,071	-	EX31_RS15045	0.33	-0.8
25,071	-	EX31_RS15045	0.33	-1.8
25,071	-	EX31_RS15045	0.33	+0.5
25,071	-	EX31_RS15045	0.33	-1.3
25,071	-	EX31_RS15045	0.33	-0.6
25,071	-	EX31_RS15045	0.33	-0.2
25,071	-	EX31_RS15045	0.33	+1.0
25,071	-	EX31_RS15045	0.33	+0.0
25,071	-	EX31_RS15045	0.33	+0.1
25,071	-	EX31_RS15045	0.33	-1.8
25,160	+	EX31_RS15045	0.60	+1.4
25,160	+	EX31_RS15045	0.60	+1.6
25,160	+	EX31_RS15045	0.60	+1.0
25,160	+	EX31_RS15045	0.60	+1.4
25,160	+	EX31_RS15045	0.60	+0.8
25,161	-	EX31_RS15045	0.61	-1.7
25,169	+	EX31_RS15045	0.63	+1.7
25,169	+	EX31_RS15045	0.63	+1.8
25,169	+	EX31_RS15045	0.63	+1.0
25,170	-	EX31_RS15045	0.63	-0.0
25,170	-	EX31_RS15045	0.63	-0.3
25,170	-	EX31_RS15045	0.63	+0.8
25,170	-	EX31_RS15045	0.63	+0.4
25,173	+	EX31_RS15045	0.64	+1.9
25,173	+	EX31_RS15045	0.64	+1.0
25,174	-	EX31_RS15045	0.65	+1.9
25,187	+	EX31_RS15045	0.69	+1.0
25,194	-	EX31_RS15045	0.71	-0.3
25,194	-	EX31_RS15045	0.71	-0.0
25,204	+	EX31_RS15045	0.74	+1.0
25,204	+	EX31_RS15045	0.74	+1.0
25,208	+	EX31_RS15045	0.75	+1.3
25,233	-	EX31_RS15045	0.83	+0.5
25,233	-	EX31_RS15045	0.83	+0.8
25,273	+			+0.6
25,273	+			+0.5
25,274	-			-1.2
25,280	+			+0.9
25,280	+			+1.6
25,280	+			+1.1
25,280	+			+0.1
25,280	+			+1.0
25,281	-			+0.3
25,373	+			+0.1
25,373	+			-0.1
25,373	+			-0.1
25,385	+			+2.0
25,385	+			+1.8
25,394	+			+1.3
25,394	+			+2.5
25,401	+			+2.1
25,401	+			+1.2
25,401	+			+3.0
25,401	+			+2.6
25,401	+			+1.7
25,401	+			+1.5
25,407	+			+1.2
25,407	+			+1.0
25,407	+			+1.2
25,407	+			+2.5
25,407	+			+1.2
25,407	+			+1.1
25,419	+			+1.7
25,426	+			+1.3
25,453	+			+1.4
25,473	+			+1.3
25,473	+			+1.1
25,531	+			+0.4
25,554	+			+0.3
25,554	+			+0.4
25,554	+			+0.5
25,554	+			+0.8
25,582	+			+0.7
25,608	+			+0.3
25,612	+			+1.1
25,612	+			+0.6
25,612	+			-0.2
25,612	+			+0.1
25,612	+			+1.1
25,612	+			+0.7
25,621	+			+0.7
25,621	+			+0.3
25,621	+			-1.5
25,621	+			+0.0
25,621	+			-0.1
25,621	+			+0.0
25,621	+			+1.0
25,621	+			+0.3
25,621	+			+0.5
25,621	+			-0.2
25,621	+			+0.9
25,621	+			+1.0
25,621	+			+0.2
25,626	+			-1.2
25,626	+			+0.2
25,626	+			-1.5
25,679	+			-0.2
25,679	+			+0.1
25,679	+			-0.2

Or see this region's nucleotide sequence