Strain Fitness in Rahnella sp. WP5 around EX31_RS12110

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
87,477	+		EX31_RS12105	0.66	-0.5
87,477	+		EX31_RS12105	0.66	+0.2
87,543	+		EX31_RS12105	0.69	-0.1
87,543	+		EX31_RS12105	0.69	-2.0
87,543	+		EX31_RS12105	0.69	-0.2
87,543	+		EX31_RS12105	0.69	-0.1
87,551	-		EX31_RS12105	0.70	+0.4
87,570	+		EX31_RS12105	0.71	-0.0
87,614	+		EX31_RS12105	0.73	+0.2
87,614	+		EX31_RS12105	0.73	-0.4
87,614	+		EX31_RS12105	0.73	+0.2
87,614	+		EX31_RS12105	0.73	-0.0
87,614	+		EX31_RS12105	0.73	+0.0
87,614	+		EX31_RS12105	0.73	-0.6
87,614	+		EX31_RS12105	0.73	-0.9
87,614	+		EX31_RS12105	0.73	-0.4
87,614	+		EX31_RS12105	0.73	+0.4
87,614	+		EX31_RS12105	0.73	-0.4
87,615	-		EX31_RS12105	0.73	+0.6
87,615	-		EX31_RS12105	0.73	-0.4
87,615	-		EX31_RS12105	0.73	-0.4
87,615	-		EX31_RS12105	0.73	+0.2
87,615	-		EX31_RS12105	0.73	+0.0
87,615	-		EX31_RS12105	0.73	-0.5
87,615	-		EX31_RS12105	0.73	+0.9
87,615	-		EX31_RS12105	0.73	-0.3
87,615	-		EX31_RS12105	0.73	+0.5
87,615	-		EX31_RS12105	0.73	+0.2
87,615	-		EX31_RS12105	0.73	+0.8
87,615	-		EX31_RS12105	0.73	-1.3
87,615	-		EX31_RS12105	0.73	+0.1
87,615	-		EX31_RS12105	0.73	-0.1
87,615	-		EX31_RS12105	0.73	-0.2
87,643	+		EX31_RS12105	0.74	-0.8
87,751	+		EX31_RS12105	0.79	+0.1
87,767	+		EX31_RS12105	0.80	+0.8
87,773	+		EX31_RS12105	0.80	+0.6
87,774	-		EX31_RS12105	0.80	-0.5
87,815	+		EX31_RS12105	0.82	-0.3
87,816	-		EX31_RS12105	0.82	+1.5
87,816	-		EX31_RS12105	0.82	-0.1
87,816	-		EX31_RS12105	0.82	-2.8
87,816	-		EX31_RS12105	0.82	-0.5
87,862	+		EX31_RS12105	0.85	+0.1
87,862	+		EX31_RS12105	0.85	-0.0
87,863	-		EX31_RS12105	0.85	+0.5
87,863	-		EX31_RS12105	0.85	-0.0
87,863	-		EX31_RS12105	0.85	+0.2
87,877	+		EX31_RS12105	0.85	-1.5
87,892	+		EX31_RS12105	0.86	+0.5
87,893	-		EX31_RS12105	0.86	+0.2
87,936	+		EX31_RS12105	0.88	+0.2
87,937	-		EX31_RS12105	0.88	+0.4
87,949	-		EX31_RS12105	0.89	+0.1
87,953	-		EX31_RS12105	0.89	-0.5
87,984	+				+0.3
87,984	+				+0.0
87,985	-				+1.1
88,113	+				-0.6
88,114	-				+0.1
88,115	+				-0.0
88,115	+				+0.7
88,115	+				+0.9
88,116	-				+0.3
88,116	-				-1.9
88,116	-				+0.2
88,166	+				-0.4
88,166	+				-0.8
88,167	-				-0.0
88,167	-				+0.3
88,254	+				-0.7
88,255	-				-0.8
88,257	+				+0.1
88,257	+				-0.3
88,292	+				-0.9
88,293	-				-0.4
88,327	+				+0.6
88,348	-				+0.2
88,370	-				+0.6
88,372	+				-0.4
88,408	+				+0.1
88,410	+				+0.8
88,411	-				+0.3
88,411	-				-0.2
88,450	+				-0.4
88,451	-				+0.2
88,451	-				+0.4
88,497	+				-0.4
88,497	+				-1.2
88,498	-				-0.5
88,664	+		EX31_RS12110	0.32	-0.7
88,664	+		EX31_RS12110	0.32	+0.1
88,664	+		EX31_RS12110	0.32	-0.0
88,664	+		EX31_RS12110	0.32	+0.5
88,679	+		EX31_RS12110	0.34	-0.8
88,679	+		EX31_RS12110	0.34	-0.4
88,679	+		EX31_RS12110	0.34	+1.2
88,679	+		EX31_RS12110	0.34	-0.8
88,679	+		EX31_RS12110	0.34	+0.5
88,679	+		EX31_RS12110	0.34	+0.1
88,731	-		EX31_RS12110	0.42	+0.7
88,736	+		EX31_RS12110	0.43	-0.4
88,748	+		EX31_RS12110	0.44	+0.1
88,748	+		EX31_RS12110	0.44	-0.5
88,749	-		EX31_RS12110	0.45	-1.1
88,851	+		EX31_RS12110	0.60	-0.5
88,852	-		EX31_RS12110	0.60	-0.1
88,852	-		EX31_RS12110	0.60	-0.3
88,875	-		EX31_RS12110	0.63	-0.7
88,892	+		EX31_RS12110	0.66	-0.0
88,892	+		EX31_RS12110	0.66	-0.7
88,892	+		EX31_RS12110	0.66	-0.3
88,893	-		EX31_RS12110	0.66	-1.4
88,893	-		EX31_RS12110	0.66	-1.0
88,894	+		EX31_RS12110	0.66	-0.2
88,894	+		EX31_RS12110	0.66	-0.0
88,894	+		EX31_RS12110	0.66	+0.1
88,894	+		EX31_RS12110	0.66	-0.3
88,894	+		EX31_RS12110	0.66	+0.4
88,895	-		EX31_RS12110	0.66	-0.6
88,907	+		EX31_RS12110	0.68	-0.0
88,908	-		EX31_RS12110	0.68	-0.2
88,927	+		EX31_RS12110	0.71	-0.2
88,928	-		EX31_RS12110	0.71	-0.3
88,928	-		EX31_RS12110	0.71	-0.1
88,937	+		EX31_RS12110	0.73	+0.0
88,938	-		EX31_RS12110	0.73	+0.7
88,938	-		EX31_RS12110	0.73	-0.5
88,938	-		EX31_RS12110	0.73	-0.8
88,970	-		EX31_RS12110	0.78	-0.5
88,970	-		EX31_RS12110	0.78	-0.4
89,047	-		EX31_RS12110	0.89	-0.3
89,169	+				-1.3
89,176	+				-0.9
89,177	-				-0.8
89,185	+				-0.2
89,185	+				-0.2
89,186	-				-1.0
89,186	-				-0.2
89,188	-				-1.1
89,188	-				-0.1
89,205	-				+0.4
89,208	+				-0.6
89,209	-				+0.0
89,209	-				-0.6
89,216	+				-0.5
89,216	+				-0.7
89,217	-				+2.0
89,220	+				-0.1
89,310	+				-0.4
89,311	-				-2.0
89,336	+				-0.4
89,336	+				+0.6
89,337	-				+0.3
89,346	-				-0.7
89,453	+				-0.0
89,453	+				+0.4
89,454	-				-1.0
89,454	-				+0.3
89,483	+				-0.6
89,507	-				-0.2
89,634	-				+0.0
89,634	-				-0.1
89,634	-				-1.3
89,667	+		EX31_RS12115	0.10	+0.3
89,725	+		EX31_RS12115	0.14	+0.3
89,725	+		EX31_RS12115	0.14	+0.4
89,726	-		EX31_RS12115	0.14	+0.5
89,726	-		EX31_RS12115	0.14	-0.1
89,726	-		EX31_RS12115	0.14	+0.1
89,726	-		EX31_RS12115	0.14	+0.6
89,837	+		EX31_RS12115	0.23	+0.8
89,837	+		EX31_RS12115	0.23	+0.6
89,837	+		EX31_RS12115	0.23	+0.7
89,837	+		EX31_RS12115	0.23	+0.5
89,837	+		EX31_RS12115	0.23	+0.3
89,838	-		EX31_RS12115	0.23	-0.5
89,838	-		EX31_RS12115	0.23	-0.6
89,915	+		EX31_RS12115	0.28	+0.2
89,915	+		EX31_RS12115	0.28	+0.4
89,915	+		EX31_RS12115	0.28	+0.7
89,915	+		EX31_RS12115	0.28	+0.4
89,915	+		EX31_RS12115	0.28	+0.2
89,915	+		EX31_RS12115	0.28	+1.1
89,916	-		EX31_RS12115	0.28	+0.1
89,990	+		EX31_RS12115	0.34	+0.1
90,083	+		EX31_RS12115	0.40	-1.2
90,084	-		EX31_RS12115	0.41	-0.0
90,084	-		EX31_RS12115	0.41	-0.7