Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10235 and EX31_RS10240 are separated by 61 nucleotides EX31_RS10240 and EX31_RS10245 are separated by 47 nucleotides EX31_RS10245 and EX31_RS10250 are separated by 28 nucleotides
EX31_RS10235: EX31_RS10235 - ABC transporter permease, at 260,086 to 261,102
_RS10235
EX31_RS10240: EX31_RS10240 - ABC transporter substrate-binding protein, at 261,164 to 262,744
_RS10240
EX31_RS10245: EX31_RS10245 - D-alanyl-D-alanine dipeptidase, at 262,792 to 263,373
_RS10245
EX31_RS10250: EX31_RS10250 - MurR/RpiR family transcriptional regulator, at 263,402 to 264,274
_RS10250
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2 at 260.229 kb on - strand, within EX31_RS10235 at 260.279 kb on + strand, within EX31_RS10235 at 260.280 kb on - strand, within EX31_RS10235 at 260.400 kb on - strand, within EX31_RS10235 at 260.400 kb on - strand, within EX31_RS10235 at 260.400 kb on - strand, within EX31_RS10235 at 260.400 kb on - strand, within EX31_RS10235 at 260.400 kb on - strand, within EX31_RS10235 at 260.400 kb on - strand, within EX31_RS10235 at 260.462 kb on - strand, within EX31_RS10235 at 260.552 kb on + strand, within EX31_RS10235 at 260.552 kb on + strand, within EX31_RS10235 at 260.552 kb on + strand, within EX31_RS10235 at 260.553 kb on - strand, within EX31_RS10235 at 260.553 kb on - strand, within EX31_RS10235 at 260.553 kb on - strand, within EX31_RS10235 at 260.631 kb on - strand, within EX31_RS10235 at 260.895 kb on - strand, within EX31_RS10235 at 260.913 kb on - strand, within EX31_RS10235 at 260.946 kb on + strand, within EX31_RS10235 at 260.947 kb on - strand, within EX31_RS10235 at 260.947 kb on - strand, within EX31_RS10235 at 261.013 kb on - strand at 261.024 kb on + strand at 261.030 kb on + strand at 261.115 kb on + strand at 261.172 kb on + strand at 261.172 kb on + strand at 261.273 kb on + strand at 261.273 kb on + strand at 261.273 kb on + strand at 261.273 kb on + strand at 261.274 kb on - strand at 261.274 kb on - strand at 261.274 kb on - strand at 261.279 kb on + strand at 261.279 kb on + strand at 261.279 kb on + strand at 261.280 kb on - strand at 261.280 kb on - strand at 261.322 kb on - strand, within EX31_RS10240 at 261.322 kb on - strand, within EX31_RS10240 at 261.394 kb on - strand, within EX31_RS10240 at 261.442 kb on - strand, within EX31_RS10240 at 261.457 kb on - strand, within EX31_RS10240 at 261.457 kb on - strand, within EX31_RS10240 at 261.484 kb on + strand, within EX31_RS10240 at 261.634 kb on - strand, within EX31_RS10240 at 261.701 kb on + strand, within EX31_RS10240 at 261.701 kb on + strand, within EX31_RS10240 at 261.702 kb on - strand, within EX31_RS10240 at 261.702 kb on - strand, within EX31_RS10240 at 261.709 kb on - strand, within EX31_RS10240 at 261.807 kb on + strand, within EX31_RS10240 at 261.877 kb on - strand, within EX31_RS10240 at 261.882 kb on + strand, within EX31_RS10240 at 261.882 kb on + strand, within EX31_RS10240 at 261.882 kb on + strand, within EX31_RS10240 at 261.883 kb on - strand, within EX31_RS10240 at 261.883 kb on - strand, within EX31_RS10240 at 261.883 kb on - strand, within EX31_RS10240 at 261.883 kb on - strand, within EX31_RS10240 at 262.144 kb on + strand, within EX31_RS10240 at 262.144 kb on + strand, within EX31_RS10240 at 262.144 kb on + strand, within EX31_RS10240 at 262.166 kb on - strand, within EX31_RS10240 at 262.237 kb on - strand, within EX31_RS10240 at 262.517 kb on - strand, within EX31_RS10240 at 262.537 kb on - strand, within EX31_RS10240 at 262.661 kb on + strand at 262.662 kb on - strand at 262.662 kb on - strand at 262.790 kb on - strand at 262.844 kb on + strand at 262.844 kb on + strand at 262.938 kb on + strand, within EX31_RS10245 at 262.947 kb on + strand, within EX31_RS10245 at 262.947 kb on + strand, within EX31_RS10245 at 262.948 kb on - strand, within EX31_RS10245 at 262.982 kb on - strand, within EX31_RS10245 at 263.102 kb on + strand, within EX31_RS10245 at 263.166 kb on - strand, within EX31_RS10245 at 263.205 kb on + strand, within EX31_RS10245 at 263.206 kb on - strand, within EX31_RS10245 at 263.297 kb on + strand, within EX31_RS10245 at 263.298 kb on - strand, within EX31_RS10245 at 263.368 kb on - strand at 263.463 kb on - strand at 263.570 kb on + strand, within EX31_RS10250 at 263.571 kb on - strand, within EX31_RS10250 at 263.571 kb on - strand, within EX31_RS10250 at 263.604 kb on + strand, within EX31_RS10250 at 263.605 kb on - strand, within EX31_RS10250 at 263.706 kb on + strand, within EX31_RS10250 at 263.706 kb on + strand, within EX31_RS10250 at 263.707 kb on - strand, within EX31_RS10250 at 263.742 kb on + strand, within EX31_RS10250 at 263.742 kb on + strand, within EX31_RS10250 at 263.742 kb on + strand, within EX31_RS10250 at 263.742 kb on + strand, within EX31_RS10250 at 263.742 kb on + strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 260,229 - EX31_RS10235 0.14 -0.5 260,279 + EX31_RS10235 0.19 +0.4 260,280 - EX31_RS10235 0.19 -1.0 260,400 - EX31_RS10235 0.31 -0.1 260,400 - EX31_RS10235 0.31 +0.2 260,400 - EX31_RS10235 0.31 +1.3 260,400 - EX31_RS10235 0.31 -1.2 260,400 - EX31_RS10235 0.31 -0.2 260,400 - EX31_RS10235 0.31 -0.8 260,462 - EX31_RS10235 0.37 +0.1 260,552 + EX31_RS10235 0.46 -0.0 260,552 + EX31_RS10235 0.46 -0.0 260,552 + EX31_RS10235 0.46 +0.1 260,553 - EX31_RS10235 0.46 -1.2 260,553 - EX31_RS10235 0.46 +1.4 260,553 - EX31_RS10235 0.46 +0.9 260,631 - EX31_RS10235 0.54 -0.5 260,895 - EX31_RS10235 0.80 +0.0 260,913 - EX31_RS10235 0.81 -1.5 260,946 + EX31_RS10235 0.85 +0.1 260,947 - EX31_RS10235 0.85 +0.4 260,947 - EX31_RS10235 0.85 +0.6 261,013 - -0.2 261,024 + -1.2 261,030 + -0.2 261,115 + +0.3 261,172 + -0.6 261,172 + -1.7 261,273 + +0.0 261,273 + -0.4 261,273 + +1.2 261,273 + -0.4 261,274 - +1.8 261,274 - +0.2 261,274 - +0.5 261,279 + -0.1 261,279 + +1.1 261,279 + -0.8 261,280 - +0.4 261,280 - +0.5 261,322 - EX31_RS10240 0.10 +0.5 261,322 - EX31_RS10240 0.10 +0.1 261,394 - EX31_RS10240 0.15 +0.3 261,442 - EX31_RS10240 0.18 +0.4 261,457 - EX31_RS10240 0.19 -0.5 261,457 - EX31_RS10240 0.19 -0.5 261,484 + EX31_RS10240 0.20 -0.2 261,634 - EX31_RS10240 0.30 -0.4 261,701 + EX31_RS10240 0.34 -0.1 261,701 + EX31_RS10240 0.34 -0.5 261,702 - EX31_RS10240 0.34 -0.6 261,702 - EX31_RS10240 0.34 -0.1 261,709 - EX31_RS10240 0.34 -0.4 261,807 + EX31_RS10240 0.41 -1.9 261,877 - EX31_RS10240 0.45 +1.5 261,882 + EX31_RS10240 0.45 -1.0 261,882 + EX31_RS10240 0.45 +0.1 261,882 + EX31_RS10240 0.45 +0.2 261,883 - EX31_RS10240 0.45 -2.2 261,883 - EX31_RS10240 0.45 -0.6 261,883 - EX31_RS10240 0.45 -1.6 261,883 - EX31_RS10240 0.45 -1.1 262,144 + EX31_RS10240 0.62 -0.3 262,144 + EX31_RS10240 0.62 -0.3 262,144 + EX31_RS10240 0.62 +0.1 262,166 - EX31_RS10240 0.63 -0.2 262,237 - EX31_RS10240 0.68 -0.5 262,517 - EX31_RS10240 0.86 -0.7 262,537 - EX31_RS10240 0.87 +1.1 262,661 + +0.6 262,662 - -0.6 262,662 - -0.3 262,790 - +0.8 262,844 + -0.6 262,844 + +1.5 262,938 + EX31_RS10245 0.25 +0.2 262,947 + EX31_RS10245 0.27 -0.6 262,947 + EX31_RS10245 0.27 -0.6 262,948 - EX31_RS10245 0.27 +1.0 262,982 - EX31_RS10245 0.33 -1.2 263,102 + EX31_RS10245 0.53 +0.4 263,166 - EX31_RS10245 0.64 +0.7 263,205 + EX31_RS10245 0.71 +0.0 263,206 - EX31_RS10245 0.71 +0.6 263,297 + EX31_RS10245 0.87 -0.8 263,298 - EX31_RS10245 0.87 +0.6 263,368 - +0.5 263,463 - -0.7 263,570 + EX31_RS10250 0.19 -0.3 263,571 - EX31_RS10250 0.19 +1.2 263,571 - EX31_RS10250 0.19 +0.7 263,604 + EX31_RS10250 0.23 +0.8 263,605 - EX31_RS10250 0.23 +0.7 263,706 + EX31_RS10250 0.35 +0.2 263,706 + EX31_RS10250 0.35 -0.1 263,707 - EX31_RS10250 0.35 -0.2 263,742 + EX31_RS10250 0.39 +0.1 263,742 + EX31_RS10250 0.39 +0.8 263,742 + EX31_RS10250 0.39 +0.7 263,742 + EX31_RS10250 0.39 +1.6 263,742 + EX31_RS10250 0.39 +2.3 263,743 - EX31_RS10250 0.39 -2.7 263,743 - EX31_RS10250 0.39 +0.4 263,743 - EX31_RS10250 0.39 +0.0 263,743 - EX31_RS10250 0.39 -0.6 263,743 - EX31_RS10250 0.39 -1.6 263,743 - EX31_RS10250 0.39 -0.2 263,743 - EX31_RS10250 0.39 +0.2 263,743 - EX31_RS10250 0.39 -1.2 263,743 - EX31_RS10250 0.39 +0.1
Or see this region's nucleotide sequence