Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03480 and EX31_RS03485 are separated by 163 nucleotides EX31_RS03485 and EX31_RS03490 are separated by 429 nucleotides
EX31_RS03480: EX31_RS03480 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 187,873 to 190,536
_RS03480
EX31_RS03485: EX31_RS03485 - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 190,700 to 191,470
_RS03485
EX31_RS03490: EX31_RS03490 - aromatic amino acid transporter AroP, at 191,900 to 193,270
_RS03490
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 189.926 kb on + strand, within EX31_RS03480 at 189.927 kb on - strand, within EX31_RS03480 at 189.927 kb on - strand, within EX31_RS03480 at 190.121 kb on + strand, within EX31_RS03480 at 190.281 kb on + strand at 190.297 kb on - strand at 190.350 kb on + strand at 190.351 kb on - strand at 190.358 kb on + strand at 190.359 kb on - strand at 190.550 kb on - strand at 190.560 kb on - strand at 190.562 kb on + strand at 190.563 kb on - strand at 190.563 kb on - strand at 190.563 kb on - strand at 190.563 kb on - strand at 190.563 kb on - strand at 190.652 kb on - strand at 190.652 kb on - strand at 190.652 kb on - strand at 190.652 kb on - strand at 190.652 kb on - strand at 190.652 kb on - strand at 190.652 kb on - strand at 190.652 kb on - strand at 190.734 kb on - strand at 190.734 kb on - strand at 190.824 kb on - strand, within EX31_RS03485 at 190.824 kb on - strand, within EX31_RS03485 at 190.824 kb on - strand, within EX31_RS03485 at 190.906 kb on - strand, within EX31_RS03485 at 190.955 kb on - strand, within EX31_RS03485 at 190.955 kb on - strand, within EX31_RS03485 at 190.985 kb on - strand, within EX31_RS03485 at 191.001 kb on - strand, within EX31_RS03485 at 191.014 kb on - strand, within EX31_RS03485 at 191.014 kb on - strand, within EX31_RS03485 at 191.014 kb on - strand, within EX31_RS03485 at 191.133 kb on + strand, within EX31_RS03485 at 191.134 kb on - strand, within EX31_RS03485 at 191.134 kb on - strand, within EX31_RS03485 at 191.205 kb on - strand, within EX31_RS03485 at 191.205 kb on - strand, within EX31_RS03485 at 191.243 kb on - strand, within EX31_RS03485 at 191.243 kb on - strand, within EX31_RS03485 at 191.243 kb on - strand, within EX31_RS03485 at 191.243 kb on - strand, within EX31_RS03485 at 191.243 kb on - strand, within EX31_RS03485 at 191.250 kb on - strand, within EX31_RS03485 at 191.250 kb on - strand, within EX31_RS03485 at 191.250 kb on - strand, within EX31_RS03485 at 191.250 kb on - strand, within EX31_RS03485 at 191.258 kb on - strand, within EX31_RS03485 at 191.258 kb on - strand, within EX31_RS03485 at 191.258 kb on - strand, within EX31_RS03485 at 191.258 kb on - strand, within EX31_RS03485 at 191.283 kb on - strand, within EX31_RS03485 at 191.283 kb on - strand, within EX31_RS03485 at 191.334 kb on - strand, within EX31_RS03485 at 191.334 kb on - strand, within EX31_RS03485 at 191.334 kb on - strand, within EX31_RS03485 at 191.444 kb on - strand at 191.444 kb on - strand at 191.444 kb on - strand at 191.444 kb on - strand at 191.444 kb on - strand at 191.444 kb on - strand at 191.444 kb on - strand at 191.444 kb on - strand at 191.444 kb on - strand at 191.444 kb on - strand at 191.444 kb on - strand at 191.464 kb on - strand at 191.464 kb on - strand at 191.464 kb on - strand at 191.464 kb on - strand at 191.464 kb on - strand at 191.464 kb on - strand at 191.464 kb on - strand at 191.464 kb on - strand at 191.464 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.471 kb on - strand at 191.472 kb on + strand at 191.472 kb on + strand at 191.472 kb on + strand at 191.472 kb on + strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.473 kb on - strand at 191.492 kb on + strand at 191.505 kb on - strand at 191.526 kb on - strand at 191.526 kb on - strand at 191.529 kb on - strand at 191.557 kb on - strand at 191.564 kb on + strand at 191.565 kb on - strand at 191.565 kb on - strand at 191.565 kb on - strand at 191.582 kb on - strand at 191.594 kb on + strand at 191.594 kb on + strand at 191.594 kb on + strand at 191.595 kb on - strand at 191.595 kb on - strand at 191.595 kb on - strand at 191.668 kb on - strand at 191.687 kb on - strand at 191.687 kb on - strand at 191.702 kb on - strand at 191.709 kb on - strand at 191.723 kb on + strand at 191.723 kb on + strand at 191.723 kb on + strand at 191.723 kb on + strand at 191.723 kb on + strand at 191.724 kb on - strand at 191.724 kb on - strand at 191.771 kb on + strand at 191.809 kb on + strand at 191.867 kb on - strand at 191.897 kb on + strand at 191.897 kb on + strand at 191.897 kb on + strand at 191.897 kb on + strand at 191.897 kb on + strand at 191.898 kb on - strand at 191.898 kb on - strand at 191.953 kb on + strand at 191.971 kb on - strand at 192.050 kb on + strand, within EX31_RS03490 at 192.050 kb on + strand, within EX31_RS03490 at 192.068 kb on - strand, within EX31_RS03490 at 192.078 kb on + strand, within EX31_RS03490 at 192.078 kb on + strand, within EX31_RS03490 at 192.078 kb on + strand, within EX31_RS03490 at 192.078 kb on + strand, within EX31_RS03490 at 192.078 kb on + strand, within EX31_RS03490 at 192.078 kb on + strand, within EX31_RS03490 at 192.078 kb on + strand, within EX31_RS03490 at 192.078 kb on + strand, within EX31_RS03490 at 192.079 kb on - strand, within EX31_RS03490 at 192.082 kb on + strand, within EX31_RS03490 at 192.082 kb on + strand, within EX31_RS03490 at 192.148 kb on + strand, within EX31_RS03490 at 192.148 kb on + strand, within EX31_RS03490 at 192.148 kb on + strand, within EX31_RS03490 at 192.149 kb on - strand, within EX31_RS03490 at 192.149 kb on - strand, within EX31_RS03490 at 192.152 kb on + strand, within EX31_RS03490 at 192.152 kb on + strand, within EX31_RS03490 at 192.152 kb on + strand, within EX31_RS03490 at 192.153 kb on - strand, within EX31_RS03490 at 192.203 kb on + strand, within EX31_RS03490 at 192.203 kb on + strand, within EX31_RS03490 at 192.203 kb on + strand, within EX31_RS03490 at 192.203 kb on + strand, within EX31_RS03490 at 192.203 kb on + strand, within EX31_RS03490 at 192.203 kb on + strand, within EX31_RS03490 at 192.203 kb on + strand, within EX31_RS03490 at 192.203 kb on + strand, within EX31_RS03490 at 192.203 kb on + strand, within EX31_RS03490 at 192.204 kb on - strand, within EX31_RS03490 at 192.245 kb on + strand, within EX31_RS03490 at 192.245 kb on + strand, within EX31_RS03490 at 192.245 kb on + strand, within EX31_RS03490 at 192.246 kb on - strand, within EX31_RS03490 at 192.246 kb on - strand, within EX31_RS03490 at 192.246 kb on - strand, within EX31_RS03490 at 192.246 kb on - strand, within EX31_RS03490 at 192.247 kb on + strand, within EX31_RS03490 at 192.248 kb on - strand, within EX31_RS03490 at 192.328 kb on + strand, within EX31_RS03490
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 189,926 + EX31_RS03480 0.77 +3.1 189,927 - EX31_RS03480 0.77 +0.1 189,927 - EX31_RS03480 0.77 +2.0 190,121 + EX31_RS03480 0.84 +0.1 190,281 + +0.1 190,297 - +1.6 190,350 + +0.4 190,351 - +3.1 190,358 + +0.7 190,359 - +2.2 190,550 - +1.5 190,560 - +0.2 190,562 + +1.3 190,563 - +0.7 190,563 - +0.6 190,563 - +1.0 190,563 - +0.3 190,563 - +0.5 190,652 - -0.3 190,652 - -0.1 190,652 - -0.3 190,652 - +0.1 190,652 - +0.3 190,652 - +0.5 190,652 - +0.1 190,652 - -0.2 190,734 - -0.1 190,734 - +0.4 190,824 - EX31_RS03485 0.16 -1.2 190,824 - EX31_RS03485 0.16 +0.5 190,824 - EX31_RS03485 0.16 -0.5 190,906 - EX31_RS03485 0.27 +0.3 190,955 - EX31_RS03485 0.33 +0.5 190,955 - EX31_RS03485 0.33 +0.2 190,985 - EX31_RS03485 0.37 +0.6 191,001 - EX31_RS03485 0.39 -0.8 191,014 - EX31_RS03485 0.41 +0.1 191,014 - EX31_RS03485 0.41 +0.2 191,014 - EX31_RS03485 0.41 +0.2 191,133 + EX31_RS03485 0.56 +0.2 191,134 - EX31_RS03485 0.56 +0.8 191,134 - EX31_RS03485 0.56 +0.1 191,205 - EX31_RS03485 0.65 +1.0 191,205 - EX31_RS03485 0.65 +0.4 191,243 - EX31_RS03485 0.70 +0.5 191,243 - EX31_RS03485 0.70 +0.4 191,243 - EX31_RS03485 0.70 -0.0 191,243 - EX31_RS03485 0.70 +0.1 191,243 - EX31_RS03485 0.70 -0.5 191,250 - EX31_RS03485 0.71 +0.2 191,250 - EX31_RS03485 0.71 +0.4 191,250 - EX31_RS03485 0.71 +0.4 191,250 - EX31_RS03485 0.71 +0.2 191,258 - EX31_RS03485 0.72 -0.1 191,258 - EX31_RS03485 0.72 +0.6 191,258 - EX31_RS03485 0.72 +0.6 191,258 - EX31_RS03485 0.72 -1.6 191,283 - EX31_RS03485 0.76 +0.3 191,283 - EX31_RS03485 0.76 +1.4 191,334 - EX31_RS03485 0.82 -0.3 191,334 - EX31_RS03485 0.82 +1.4 191,334 - EX31_RS03485 0.82 +0.6 191,444 - +0.5 191,444 - +1.0 191,444 - +1.4 191,444 - +0.9 191,444 - +0.5 191,444 - +0.9 191,444 - +0.8 191,444 - +1.3 191,444 - +0.2 191,444 - +0.7 191,444 - -1.3 191,464 - +0.3 191,464 - +0.5 191,464 - +0.0 191,464 - +0.2 191,464 - +0.5 191,464 - +0.6 191,464 - +0.2 191,464 - +0.2 191,464 - +0.8 191,471 - +0.6 191,471 - +0.4 191,471 - +0.8 191,471 - -0.5 191,471 - +1.4 191,471 - +0.3 191,471 - +0.4 191,471 - +0.1 191,471 - +0.2 191,471 - +0.2 191,471 - -0.3 191,471 - -0.5 191,471 - -0.0 191,471 - +0.5 191,471 - -0.0 191,472 + -1.1 191,472 + +1.8 191,472 + -0.6 191,472 + -0.2 191,473 - +1.1 191,473 - +1.0 191,473 - +1.0 191,473 - +0.5 191,473 - +0.7 191,473 - +0.8 191,473 - +0.8 191,473 - +0.5 191,473 - +0.5 191,473 - +0.6 191,473 - +0.4 191,473 - +0.5 191,473 - +0.8 191,473 - +0.9 191,473 - +0.7 191,473 - +0.8 191,473 - +0.1 191,473 - -0.3 191,473 - +0.5 191,473 - +0.7 191,473 - +1.4 191,473 - +0.1 191,473 - +0.4 191,473 - +0.8 191,473 - +0.4 191,473 - +0.1 191,473 - +0.4 191,473 - +0.2 191,473 - +0.7 191,473 - +0.8 191,473 - +0.5 191,473 - -0.3 191,473 - +0.2 191,473 - -0.2 191,473 - -0.1 191,473 - -0.0 191,473 - +0.8 191,473 - +0.8 191,473 - +0.4 191,473 - +1.2 191,473 - +0.6 191,473 - +0.1 191,473 - -0.4 191,473 - +0.2 191,473 - +0.6 191,473 - -0.1 191,492 + +2.1 191,505 - +0.3 191,526 - +0.4 191,526 - +0.3 191,529 - +0.4 191,557 - +0.3 191,564 + -0.2 191,565 - -0.2 191,565 - +0.3 191,565 - -1.0 191,582 - -0.2 191,594 + +0.6 191,594 + +0.1 191,594 + -0.3 191,595 - -0.1 191,595 - +0.1 191,595 - -0.3 191,668 - +0.2 191,687 - -0.2 191,687 - +0.6 191,702 - +0.4 191,709 - +0.1 191,723 + +0.4 191,723 + +0.2 191,723 + +0.4 191,723 + -0.0 191,723 + -0.6 191,724 - +0.0 191,724 - +0.1 191,771 + -0.1 191,809 + +0.2 191,867 - -0.7 191,897 + -0.1 191,897 + -0.8 191,897 + +1.0 191,897 + -0.1 191,897 + -0.0 191,898 - -0.0 191,898 - -0.9 191,953 + +1.0 191,971 - -1.1 192,050 + EX31_RS03490 0.11 +0.1 192,050 + EX31_RS03490 0.11 +0.4 192,068 - EX31_RS03490 0.12 +0.5 192,078 + EX31_RS03490 0.13 +0.3 192,078 + EX31_RS03490 0.13 -0.1 192,078 + EX31_RS03490 0.13 +0.7 192,078 + EX31_RS03490 0.13 -0.0 192,078 + EX31_RS03490 0.13 +1.0 192,078 + EX31_RS03490 0.13 -0.1 192,078 + EX31_RS03490 0.13 +0.0 192,078 + EX31_RS03490 0.13 +0.9 192,079 - EX31_RS03490 0.13 -1.3 192,082 + EX31_RS03490 0.13 +0.3 192,082 + EX31_RS03490 0.13 -0.9 192,148 + EX31_RS03490 0.18 +0.2 192,148 + EX31_RS03490 0.18 +0.4 192,148 + EX31_RS03490 0.18 +0.8 192,149 - EX31_RS03490 0.18 +0.0 192,149 - EX31_RS03490 0.18 -0.6 192,152 + EX31_RS03490 0.18 -0.1 192,152 + EX31_RS03490 0.18 +0.2 192,152 + EX31_RS03490 0.18 +0.4 192,153 - EX31_RS03490 0.18 -0.4 192,203 + EX31_RS03490 0.22 +0.8 192,203 + EX31_RS03490 0.22 +0.2 192,203 + EX31_RS03490 0.22 -0.0 192,203 + EX31_RS03490 0.22 +0.1 192,203 + EX31_RS03490 0.22 -0.3 192,203 + EX31_RS03490 0.22 +0.4 192,203 + EX31_RS03490 0.22 -0.3 192,203 + EX31_RS03490 0.22 -0.5 192,203 + EX31_RS03490 0.22 +0.2 192,204 - EX31_RS03490 0.22 +0.5 192,245 + EX31_RS03490 0.25 +0.3 192,245 + EX31_RS03490 0.25 -0.4 192,245 + EX31_RS03490 0.25 +0.1 192,246 - EX31_RS03490 0.25 -0.8 192,246 - EX31_RS03490 0.25 -1.4 192,246 - EX31_RS03490 0.25 -3.0 192,246 - EX31_RS03490 0.25 -0.6 192,247 + EX31_RS03490 0.25 -0.3 192,248 - EX31_RS03490 0.25 -1.4 192,328 + EX31_RS03490 0.31 +0.0
Or see this region's nucleotide sequence