Strain Fitness in Rahnella sp. WP5 around EX31_RS24280

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24265 and EX31_RS24270 are separated by 66 nucleotidesEX31_RS24270 and EX31_RS24275 are separated by 245 nucleotidesEX31_RS24275 and EX31_RS24280 are separated by 171 nucleotidesEX31_RS24280 and EX31_RS24285 overlap by 7 nucleotidesEX31_RS24285 and EX31_RS24290 are separated by 15 nucleotides EX31_RS24265: EX31_RS24265 - secY/secA suppressor protein, at 621,449 to 621,856 _RS24265 EX31_RS24270: EX31_RS24270 - hypothetical protein, at 621,923 to 622,207 _RS24270 EX31_RS24275: EX31_RS24275 - hypothetical protein, at 622,453 to 622,647 _RS24275 EX31_RS24280: EX31_RS24280 - hypothetical protein, at 622,819 to 623,283 _RS24280 EX31_RS24285: EX31_RS24285 - DUF1493 family protein, at 623,277 to 623,603 _RS24285 EX31_RS24290: EX31_RS24290 - type VI secretion system tube protein Hcp, at 623,619 to 624,104 _RS24290 Position (kb) 622 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 621.827 kb on - strandat 621.847 kb on - strandat 621.847 kb on - strandat 621.856 kb on + strandat 621.857 kb on - strandat 621.895 kb on + strandat 621.896 kb on - strandat 621.951 kb on + strandat 621.954 kb on - strand, within EX31_RS24270at 621.961 kb on + strand, within EX31_RS24270at 621.961 kb on + strand, within EX31_RS24270at 622.017 kb on + strand, within EX31_RS24270at 622.017 kb on + strand, within EX31_RS24270at 622.045 kb on - strand, within EX31_RS24270at 622.062 kb on - strand, within EX31_RS24270at 622.083 kb on - strand, within EX31_RS24270at 622.104 kb on + strand, within EX31_RS24270at 622.119 kb on - strand, within EX31_RS24270at 622.119 kb on - strand, within EX31_RS24270at 622.138 kb on + strand, within EX31_RS24270at 622.287 kb on - strandat 622.346 kb on - strandat 622.346 kb on - strandat 622.368 kb on - strandat 622.451 kb on + strandat 622.468 kb on + strandat 622.663 kb on + strandat 622.769 kb on + strandat 622.819 kb on - strandat 622.849 kb on + strandat 622.914 kb on + strand, within EX31_RS24280at 622.914 kb on + strand, within EX31_RS24280at 622.915 kb on - strand, within EX31_RS24280at 622.958 kb on + strand, within EX31_RS24280at 622.958 kb on + strand, within EX31_RS24280at 622.959 kb on - strand, within EX31_RS24280at 623.019 kb on + strand, within EX31_RS24280at 623.032 kb on + strand, within EX31_RS24280at 623.040 kb on + strand, within EX31_RS24280at 623.040 kb on + strand, within EX31_RS24280at 623.052 kb on + strand, within EX31_RS24280at 623.115 kb on + strand, within EX31_RS24280at 623.116 kb on - strand, within EX31_RS24280at 623.148 kb on + strand, within EX31_RS24280at 623.148 kb on + strand, within EX31_RS24280at 623.148 kb on + strand, within EX31_RS24280at 623.149 kb on - strand, within EX31_RS24280at 623.149 kb on - strand, within EX31_RS24280at 623.190 kb on + strand, within EX31_RS24280at 623.194 kb on - strand, within EX31_RS24280at 623.199 kb on - strand, within EX31_RS24280at 623.199 kb on - strand, within EX31_RS24280at 623.227 kb on + strand, within EX31_RS24280at 623.228 kb on - strand, within EX31_RS24280at 623.245 kb on + strandat 623.334 kb on + strand, within EX31_RS24285at 623.334 kb on + strand, within EX31_RS24285at 623.334 kb on + strand, within EX31_RS24285at 623.335 kb on - strand, within EX31_RS24285at 623.335 kb on - strand, within EX31_RS24285at 623.335 kb on - strand, within EX31_RS24285at 623.392 kb on + strand, within EX31_RS24285at 623.392 kb on + strand, within EX31_RS24285at 623.393 kb on - strand, within EX31_RS24285at 623.422 kb on + strand, within EX31_RS24285at 623.433 kb on + strand, within EX31_RS24285at 623.466 kb on + strand, within EX31_RS24285at 623.552 kb on + strand, within EX31_RS24285at 623.558 kb on + strand, within EX31_RS24285at 623.558 kb on + strand, within EX31_RS24285at 623.558 kb on + strand, within EX31_RS24285at 623.566 kb on + strand, within EX31_RS24285at 623.595 kb on + strandat 623.638 kb on + strandat 623.686 kb on + strand, within EX31_RS24290at 623.687 kb on - strand, within EX31_RS24290at 623.708 kb on - strand, within EX31_RS24290at 623.730 kb on - strand, within EX31_RS24290at 623.750 kb on + strand, within EX31_RS24290at 623.767 kb on + strand, within EX31_RS24290at 623.833 kb on + strand, within EX31_RS24290at 623.833 kb on + strand, within EX31_RS24290at 623.835 kb on + strand, within EX31_RS24290at 623.836 kb on - strand, within EX31_RS24290at 623.836 kb on - strand, within EX31_RS24290at 623.886 kb on + strand, within EX31_RS24290at 623.944 kb on + strand, within EX31_RS24290at 623.945 kb on - strand, within EX31_RS24290at 624.048 kb on + strand, within EX31_RS24290at 624.048 kb on + strand, within EX31_RS24290at 624.049 kb on - strand, within EX31_RS24290at 624.049 kb on - strand, within EX31_RS24290at 624.103 kb on - strandat 624.171 kb on + strandat 624.195 kb on - strandat 624.231 kb on + strandat 624.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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621,827 - +1.0
621,847 - +0.2
621,847 - -0.5
621,856 + +0.3
621,857 - -0.4
621,895 + -0.1
621,896 - -0.1
621,951 + -1.6
621,954 - EX31_RS24270 0.11 -0.1
621,961 + EX31_RS24270 0.13 -0.3
621,961 + EX31_RS24270 0.13 +0.6
622,017 + EX31_RS24270 0.33 -0.8
622,017 + EX31_RS24270 0.33 -1.6
622,045 - EX31_RS24270 0.43 +0.1
622,062 - EX31_RS24270 0.49 +0.0
622,083 - EX31_RS24270 0.56 -1.7
622,104 + EX31_RS24270 0.64 +0.0
622,119 - EX31_RS24270 0.69 +0.1
622,119 - EX31_RS24270 0.69 -0.3
622,138 + EX31_RS24270 0.75 -1.2
622,287 - -1.0
622,346 - -0.8
622,346 - +0.3
622,368 - +0.1
622,451 + -0.6
622,468 + -1.5
622,663 + -1.1
622,769 + -0.8
622,819 - -0.4
622,849 + -1.4
622,914 + EX31_RS24280 0.20 +0.9
622,914 + EX31_RS24280 0.20 -1.3
622,915 - EX31_RS24280 0.21 +0.2
622,958 + EX31_RS24280 0.30 +0.0
622,958 + EX31_RS24280 0.30 -0.7
622,959 - EX31_RS24280 0.30 -1.7
623,019 + EX31_RS24280 0.43 +0.2
623,032 + EX31_RS24280 0.46 -0.2
623,040 + EX31_RS24280 0.48 -1.1
623,040 + EX31_RS24280 0.48 -2.9
623,052 + EX31_RS24280 0.50 -1.7
623,115 + EX31_RS24280 0.64 -0.1
623,116 - EX31_RS24280 0.64 +0.0
623,148 + EX31_RS24280 0.71 -0.2
623,148 + EX31_RS24280 0.71 -1.7
623,148 + EX31_RS24280 0.71 -0.0
623,149 - EX31_RS24280 0.71 -1.6
623,149 - EX31_RS24280 0.71 -1.7
623,190 + EX31_RS24280 0.80 -2.1
623,194 - EX31_RS24280 0.81 +0.3
623,199 - EX31_RS24280 0.82 -1.6
623,199 - EX31_RS24280 0.82 -1.5
623,227 + EX31_RS24280 0.88 +0.0
623,228 - EX31_RS24280 0.88 -1.0
623,245 + -0.6
623,334 + EX31_RS24285 0.17 +0.4
623,334 + EX31_RS24285 0.17 -0.3
623,334 + EX31_RS24285 0.17 -0.2
623,335 - EX31_RS24285 0.18 -1.4
623,335 - EX31_RS24285 0.18 -1.1
623,335 - EX31_RS24285 0.18 -0.0
623,392 + EX31_RS24285 0.35 -0.4
623,392 + EX31_RS24285 0.35 +0.4
623,393 - EX31_RS24285 0.35 -0.4
623,422 + EX31_RS24285 0.44 -2.9
623,433 + EX31_RS24285 0.48 +1.3
623,466 + EX31_RS24285 0.58 -1.2
623,552 + EX31_RS24285 0.84 -1.0
623,558 + EX31_RS24285 0.86 -0.1
623,558 + EX31_RS24285 0.86 +0.1
623,558 + EX31_RS24285 0.86 +0.5
623,566 + EX31_RS24285 0.88 +1.0
623,595 + +1.1
623,638 + -0.4
623,686 + EX31_RS24290 0.14 -1.5
623,687 - EX31_RS24290 0.14 +0.2
623,708 - EX31_RS24290 0.18 -0.7
623,730 - EX31_RS24290 0.23 +1.1
623,750 + EX31_RS24290 0.27 +1.4
623,767 + EX31_RS24290 0.30 +0.5
623,833 + EX31_RS24290 0.44 +0.8
623,833 + EX31_RS24290 0.44 +0.2
623,835 + EX31_RS24290 0.44 -2.1
623,836 - EX31_RS24290 0.45 -0.9
623,836 - EX31_RS24290 0.45 -1.1
623,886 + EX31_RS24290 0.55 -0.4
623,944 + EX31_RS24290 0.67 +0.4
623,945 - EX31_RS24290 0.67 +0.2
624,048 + EX31_RS24290 0.88 +0.5
624,048 + EX31_RS24290 0.88 +0.9
624,049 - EX31_RS24290 0.88 +0.5
624,049 - EX31_RS24290 0.88 +0.7
624,103 - +1.6
624,171 + +0.2
624,195 - -1.0
624,231 + -0.1
624,235 - +1.9

Or see this region's nucleotide sequence