Strain Fitness in Rahnella sp. WP5 around EX31_RS16005

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
9,097	+				-0.3
9,097	+				+0.9
9,098	-				+0.3
9,131	-				+2.1
9,182	+				+0.8
9,182	+				-0.5
9,196	+				+0.1
9,196	+				+0.1
9,196	+				-0.0
9,196	+				+0.7
9,196	+				-0.0
9,197	-				+0.6
9,222	+				-0.8
9,222	+				-0.5
9,223	-				-1.5
9,223	-				+0.2
9,226	+				-0.3
9,235	+				-0.2
9,321	+		EX31_RS15995	0.23	+0.4
9,321	+		EX31_RS15995	0.23	-0.0
9,321	+		EX31_RS15995	0.23	-0.3
9,321	+		EX31_RS15995	0.23	-0.1
9,322	-		EX31_RS15995	0.23	-1.4
9,322	-		EX31_RS15995	0.23	-1.9
9,324	+		EX31_RS15995	0.23	+1.1
9,343	+		EX31_RS15995	0.28	+0.1
9,346	+		EX31_RS15995	0.29	+0.3
9,347	-		EX31_RS15995	0.29	-0.2
9,349	+		EX31_RS15995	0.29	+0.1
9,349	+		EX31_RS15995	0.29	+2.1
9,349	+		EX31_RS15995	0.29	+0.1
9,350	-		EX31_RS15995	0.29	-0.8
9,438	+		EX31_RS15995	0.51	+0.3
9,439	-		EX31_RS15995	0.51	-1.2
9,456	+		EX31_RS15995	0.55	-0.1
9,514	+		EX31_RS15995	0.69	-0.3
9,514	+		EX31_RS15995	0.69	-0.7
9,514	+		EX31_RS15995	0.69	+1.1
9,515	-		EX31_RS15995	0.69	-1.4
9,527	-		EX31_RS15995	0.72	+0.3
9,539	-		EX31_RS15995	0.75	-0.6
9,539	-		EX31_RS15995	0.75	-0.4
9,550	+		EX31_RS15995	0.77	-0.1
9,550	+		EX31_RS15995	0.77	-1.0
9,550	+		EX31_RS15995	0.77	-0.1
9,551	-		EX31_RS15995	0.78	+0.4
9,551	-		EX31_RS15995	0.78	-0.0
9,641	+				+0.6
9,642	-				-0.4
9,660	+				+0.5
9,660	+				+1.1
9,660	+				+0.2
9,660	+				+0.9
9,660	+				-0.3
9,661	-				-0.4
9,661	-				-0.7
9,661	-				-0.3
9,678	+				-0.0
9,679	-		EX31_RS16000	0.10	+0.5
9,711	+		EX31_RS16000	0.26	-1.4
9,813	-		EX31_RS16000	0.77	+1.1
9,847	+				+1.3
9,848	-				+0.1
9,848	-				-0.3
9,848	-				+0.2
9,848	-				+0.4
9,848	-				-0.3
9,848	-				-0.1
9,848	-				+0.5
9,848	-				-0.1
9,848	-				-0.4
9,848	-				+0.5
9,848	-				+0.4
9,848	-				+0.1
9,848	-				-2.0
9,848	-				-0.8
9,848	-				-0.2
9,848	-				-0.0
9,849	+				-1.4
9,849	+				+0.1
9,850	-				-0.6
9,850	-				-0.7
9,850	-				-0.7
9,870	+				-0.9
9,870	+				+0.6
9,870	+				-0.0
9,871	-				-0.2
9,871	-				-0.2
9,876	+				+0.4
9,876	+				+0.1
9,877	-				+1.2
9,880	-				-2.2
9,882	+				-1.3
9,907	+				-1.6
9,908	-				+0.3
9,908	-				-1.4
9,913	+				-1.0
9,914	-				-2.3
9,914	-				-0.7
9,914	-				-0.8
9,914	-				-0.2
9,940	+				-1.3
9,941	-				-0.7
9,941	-				-0.2
9,943	-				+1.0
9,943	-				+0.0
9,962	+				+0.6
9,962	+				-0.5
9,963	-				+0.2
9,963	-				-0.4
9,963	-				+0.0
9,984	-				-0.1
9,984	-				+0.1
9,997	+				-0.1
9,997	+				-0.5
9,998	-		EX31_RS16005	0.10	-1.8
10,007	+		EX31_RS16005	0.12	-1.7
10,008	-		EX31_RS16005	0.12	-0.1
10,015	+		EX31_RS16005	0.14	+0.3
10,015	+		EX31_RS16005	0.14	-0.1
10,015	+		EX31_RS16005	0.14	-0.8
10,015	+		EX31_RS16005	0.14	-0.5
10,015	+		EX31_RS16005	0.14	-0.4
10,016	-		EX31_RS16005	0.14	-0.3
10,016	-		EX31_RS16005	0.14	-0.4
10,083	-		EX31_RS16005	0.30	+0.0
10,083	-		EX31_RS16005	0.30	+1.0
10,083	-		EX31_RS16005	0.30	-0.4
10,083	-		EX31_RS16005	0.30	-0.4
10,121	-		EX31_RS16005	0.40	-0.3
10,141	+		EX31_RS16005	0.44	-1.3
10,141	+		EX31_RS16005	0.44	+0.2
10,141	+		EX31_RS16005	0.44	-1.8
10,142	-		EX31_RS16005	0.45	+0.3
10,142	-		EX31_RS16005	0.45	-0.4
10,142	-		EX31_RS16005	0.45	-1.3
10,142	-		EX31_RS16005	0.45	-0.3
10,142	-		EX31_RS16005	0.45	+0.1
10,142	-		EX31_RS16005	0.45	-0.1
10,142	-		EX31_RS16005	0.45	+0.0
10,142	-		EX31_RS16005	0.45	+0.7
10,142	-		EX31_RS16005	0.45	-0.3
10,172	+		EX31_RS16005	0.52	-0.5
10,230	-		EX31_RS16005	0.66	-1.1
10,254	+		EX31_RS16005	0.71	-1.5
10,255	-		EX31_RS16005	0.72	-0.2
10,255	-		EX31_RS16005	0.72	-0.8
10,255	-		EX31_RS16005	0.72	-0.1
10,255	-		EX31_RS16005	0.72	+0.2
10,273	+		EX31_RS16005	0.76	+0.3
10,273	+		EX31_RS16005	0.76	-1.0
10,273	+		EX31_RS16005	0.76	-1.0
10,273	+		EX31_RS16005	0.76	-0.7
10,274	-		EX31_RS16005	0.76	-0.2
10,274	-		EX31_RS16005	0.76	-0.4
10,274	-		EX31_RS16005	0.76	-0.5
10,274	-		EX31_RS16005	0.76	+0.5
10,274	-		EX31_RS16005	0.76	-0.3
10,274	-		EX31_RS16005	0.76	-0.4
10,274	-		EX31_RS16005	0.76	-0.1
10,276	+		EX31_RS16005	0.77	-1.7
10,276	+		EX31_RS16005	0.77	-1.8
10,276	+		EX31_RS16005	0.77	+0.7
10,276	+		EX31_RS16005	0.77	-1.2
10,277	-		EX31_RS16005	0.77	-0.1
10,277	-		EX31_RS16005	0.77	-0.2
10,277	-		EX31_RS16005	0.77	-0.1
10,312	-		EX31_RS16005	0.85	-0.1
10,312	-		EX31_RS16005	0.85	+0.2
10,321	+		EX31_RS16005	0.88	-0.3
10,322	-		EX31_RS16005	0.88	-1.5
10,322	-		EX31_RS16005	0.88	-1.8
10,322	-		EX31_RS16005	0.88	+2.0
10,325	-		EX31_RS16005	0.88	-1.7
10,325	-		EX31_RS16005	0.88	+0.2
10,325	-		EX31_RS16005	0.88	+0.5
10,325	-		EX31_RS16005	0.88	+0.3
10,366	+				-0.2
10,367	-				-0.0
10,368	+				+0.6
10,368	+				-0.8
10,369	-				+0.1
10,376	+				+0.4
10,376	+				-0.7
10,377	-				+0.3
10,377	-				+0.6
10,377	-				-0.8
10,393	-				+0.0
10,393	-				+0.3
10,465	+		EX31_RS16010	0.24	-0.1
10,466	-		EX31_RS16010	0.25	+1.1
10,466	-		EX31_RS16010	0.25	-1.7
10,466	-		EX31_RS16010	0.25	-0.1
10,517	-		EX31_RS16010	0.38	-1.3
10,517	-		EX31_RS16010	0.38	-1.3
10,517	-		EX31_RS16010	0.38	-1.5
10,528	+		EX31_RS16010	0.41	+0.6
10,529	-		EX31_RS16010	0.42	+0.3
10,529	-		EX31_RS16010	0.42	-1.4
10,529	-		EX31_RS16010	0.42	-0.8
10,529	-		EX31_RS16010	0.42	-1.5
10,581	-		EX31_RS16010	0.56	+0.3
10,581	-		EX31_RS16010	0.56	-0.4
10,599	+		EX31_RS16010	0.61	-0.4
10,600	-		EX31_RS16010	0.61	+0.6
10,600	-		EX31_RS16010	0.61	+0.2
10,600	-		EX31_RS16010	0.61	-0.3
10,600	-		EX31_RS16010	0.61	-0.1
10,605	-		EX31_RS16010	0.62	-0.3
10,735	+				+0.7
10,736	-				-0.4
10,736	-				+0.1
10,736	-				+0.5
10,777	+				-0.1
10,777	+				-0.4
10,777	+				-0.3
10,777	+				-0.3
10,777	+				-2.0
10,778	-				+0.3
10,778	-				-0.5
10,778	-				-1.7
10,784	+				-0.1
10,821	+				+0.9
10,822	-				+0.0
10,822	-				-0.1
10,866	+				-0.2
10,866	+				-0.0
10,867	-				-0.5