Strain Fitness in Rahnella sp. WP5 around EX31_RS14575

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14570 and EX31_RS14575 are separated by 116 nucleotidesEX31_RS14575 and EX31_RS14580 are separated by 48 nucleotides EX31_RS14570: EX31_RS14570 - acetyl-CoA C-acyltransferase FadA, at 6,942 to 8,105 _RS14570 EX31_RS14575: EX31_RS14575 - NAD(P)H-flavin reductase, at 8,222 to 8,923 _RS14575 EX31_RS14580: EX31_RS14580 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 8,972 to 10,462 _RS14580 Position (kb) 8 9Strain fitness (log2 ratio) -1 0 1 2 3at 7.256 kb on + strand, within EX31_RS14570at 7.257 kb on - strand, within EX31_RS14570at 7.257 kb on - strand, within EX31_RS14570at 7.302 kb on - strand, within EX31_RS14570at 7.302 kb on - strand, within EX31_RS14570at 7.302 kb on - strand, within EX31_RS14570at 7.302 kb on - strand, within EX31_RS14570at 7.552 kb on - strand, within EX31_RS14570at 7.552 kb on - strand, within EX31_RS14570at 7.606 kb on + strand, within EX31_RS14570at 7.778 kb on + strand, within EX31_RS14570at 7.922 kb on + strand, within EX31_RS14570at 7.922 kb on + strand, within EX31_RS14570at 7.923 kb on - strand, within EX31_RS14570at 7.995 kb on - strandat 8.061 kb on - strandat 8.069 kb on - strandat 8.165 kb on + strandat 8.168 kb on + strandat 8.174 kb on + strandat 8.174 kb on + strandat 8.175 kb on - strandat 8.175 kb on - strandat 8.175 kb on - strandat 8.302 kb on + strand, within EX31_RS14575at 8.328 kb on + strand, within EX31_RS14575at 8.328 kb on + strand, within EX31_RS14575at 8.328 kb on + strand, within EX31_RS14575at 8.329 kb on - strand, within EX31_RS14575at 8.329 kb on - strand, within EX31_RS14575at 8.329 kb on - strand, within EX31_RS14575at 8.329 kb on - strand, within EX31_RS14575at 8.337 kb on + strand, within EX31_RS14575at 8.432 kb on - strand, within EX31_RS14575at 8.484 kb on + strand, within EX31_RS14575at 8.484 kb on + strand, within EX31_RS14575at 8.484 kb on + strand, within EX31_RS14575at 8.485 kb on - strand, within EX31_RS14575at 8.515 kb on - strand, within EX31_RS14575at 8.524 kb on + strand, within EX31_RS14575at 8.574 kb on + strand, within EX31_RS14575at 8.575 kb on - strand, within EX31_RS14575at 8.575 kb on - strand, within EX31_RS14575at 8.654 kb on - strand, within EX31_RS14575at 8.812 kb on + strand, within EX31_RS14575at 8.812 kb on + strand, within EX31_RS14575at 8.813 kb on - strand, within EX31_RS14575at 8.813 kb on - strand, within EX31_RS14575at 8.817 kb on + strand, within EX31_RS14575at 8.818 kb on - strand, within EX31_RS14575at 8.818 kb on - strand, within EX31_RS14575at 8.869 kb on - strandat 8.869 kb on - strandat 8.869 kb on - strandat 8.957 kb on - strandat 8.957 kb on - strandat 8.957 kb on - strandat 8.957 kb on - strandat 8.993 kb on - strandat 8.998 kb on + strandat 8.998 kb on + strandat 8.999 kb on - strandat 8.999 kb on - strandat 8.999 kb on - strandat 8.999 kb on - strandat 8.999 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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7,256 + EX31_RS14570 0.27 +0.9
7,257 - EX31_RS14570 0.27 +0.3
7,257 - EX31_RS14570 0.27 +0.3
7,302 - EX31_RS14570 0.31 -0.3
7,302 - EX31_RS14570 0.31 -0.4
7,302 - EX31_RS14570 0.31 -0.6
7,302 - EX31_RS14570 0.31 +0.5
7,552 - EX31_RS14570 0.52 -0.4
7,552 - EX31_RS14570 0.52 +0.4
7,606 + EX31_RS14570 0.57 -0.8
7,778 + EX31_RS14570 0.72 -0.3
7,922 + EX31_RS14570 0.84 +0.6
7,922 + EX31_RS14570 0.84 +0.3
7,923 - EX31_RS14570 0.84 -0.1
7,995 - +0.5
8,061 - -0.2
8,069 - +0.1
8,165 + +0.2
8,168 + +0.5
8,174 + +0.1
8,174 + +0.2
8,175 - +0.6
8,175 - +0.4
8,175 - -0.4
8,302 + EX31_RS14575 0.11 +1.0
8,328 + EX31_RS14575 0.15 +1.3
8,328 + EX31_RS14575 0.15 +1.4
8,328 + EX31_RS14575 0.15 +1.0
8,329 - EX31_RS14575 0.15 +1.0
8,329 - EX31_RS14575 0.15 +2.8
8,329 - EX31_RS14575 0.15 +1.7
8,329 - EX31_RS14575 0.15 +2.3
8,337 + EX31_RS14575 0.16 +0.2
8,432 - EX31_RS14575 0.30 +2.0
8,484 + EX31_RS14575 0.37 +1.6
8,484 + EX31_RS14575 0.37 +1.6
8,484 + EX31_RS14575 0.37 +1.8
8,485 - EX31_RS14575 0.37 +2.1
8,515 - EX31_RS14575 0.42 +3.3
8,524 + EX31_RS14575 0.43 +2.0
8,574 + EX31_RS14575 0.50 +2.3
8,575 - EX31_RS14575 0.50 +2.2
8,575 - EX31_RS14575 0.50 +2.7
8,654 - EX31_RS14575 0.62 +2.5
8,812 + EX31_RS14575 0.84 +1.0
8,812 + EX31_RS14575 0.84 +1.4
8,813 - EX31_RS14575 0.84 +2.5
8,813 - EX31_RS14575 0.84 +2.0
8,817 + EX31_RS14575 0.85 +1.4
8,818 - EX31_RS14575 0.85 +3.0
8,818 - EX31_RS14575 0.85 +1.9
8,869 - +1.6
8,869 - +2.3
8,869 - +2.8
8,957 - +0.8
8,957 - +0.7
8,957 - +0.1
8,957 - -0.0
8,993 - -0.2
8,998 + +0.2
8,998 + +1.0
8,999 - -0.5
8,999 - -0.2
8,999 - +0.1
8,999 - +0.3
8,999 - -1.5

Or see this region's nucleotide sequence