Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09005 and EX31_RS09010 overlap by 11 nucleotides EX31_RS09010 and EX31_RS09015 are separated by 24 nucleotides EX31_RS09015 and EX31_RS09020 are separated by 27 nucleotides
EX31_RS09005: EX31_RS09005 - CadC family transcriptional regulator, at 314,681 to 315,562
_RS09005
EX31_RS09010: EX31_RS09010 - hypothetical protein, at 315,552 to 316,109
_RS09010
EX31_RS09015: EX31_RS09015 - helix-turn-helix transcriptional regulator, at 316,134 to 316,406
_RS09015
EX31_RS09020: EX31_RS09020 - fimbrial protein, at 316,434 to 317,405
_RS09020
Position (kb) 316
317 Strain fitness (log2 ratio) -2
-1
0
1
2 at 315.196 kb on + strand, within EX31_RS09005 at 315.197 kb on - strand, within EX31_RS09005 at 315.197 kb on - strand, within EX31_RS09005 at 315.197 kb on - strand, within EX31_RS09005 at 315.201 kb on + strand, within EX31_RS09005 at 315.202 kb on - strand, within EX31_RS09005 at 315.202 kb on - strand, within EX31_RS09005 at 315.251 kb on + strand, within EX31_RS09005 at 315.251 kb on + strand, within EX31_RS09005 at 315.251 kb on + strand, within EX31_RS09005 at 315.251 kb on + strand, within EX31_RS09005 at 315.251 kb on + strand, within EX31_RS09005 at 315.252 kb on - strand, within EX31_RS09005 at 315.252 kb on - strand, within EX31_RS09005 at 315.298 kb on - strand, within EX31_RS09005 at 315.315 kb on - strand, within EX31_RS09005 at 315.391 kb on + strand, within EX31_RS09005 at 315.466 kb on - strand, within EX31_RS09005 at 315.499 kb on + strand at 315.500 kb on - strand at 315.511 kb on + strand at 315.522 kb on + strand at 315.528 kb on - strand at 315.528 kb on - strand at 315.532 kb on + strand at 315.532 kb on + strand at 315.532 kb on + strand at 315.533 kb on - strand at 315.572 kb on + strand at 315.623 kb on + strand, within EX31_RS09010 at 315.623 kb on + strand, within EX31_RS09010 at 315.625 kb on + strand, within EX31_RS09010 at 315.628 kb on + strand, within EX31_RS09010 at 315.629 kb on - strand, within EX31_RS09010 at 315.636 kb on - strand, within EX31_RS09010 at 315.642 kb on + strand, within EX31_RS09010 at 315.683 kb on + strand, within EX31_RS09010 at 315.683 kb on + strand, within EX31_RS09010 at 315.686 kb on + strand, within EX31_RS09010 at 315.686 kb on + strand, within EX31_RS09010 at 315.686 kb on + strand, within EX31_RS09010 at 315.687 kb on - strand, within EX31_RS09010 at 315.687 kb on - strand, within EX31_RS09010 at 315.687 kb on - strand, within EX31_RS09010 at 315.687 kb on - strand, within EX31_RS09010 at 315.688 kb on + strand, within EX31_RS09010 at 315.688 kb on + strand, within EX31_RS09010 at 315.689 kb on - strand, within EX31_RS09010 at 315.689 kb on - strand, within EX31_RS09010 at 315.689 kb on - strand, within EX31_RS09010 at 315.704 kb on + strand, within EX31_RS09010 at 315.712 kb on + strand, within EX31_RS09010 at 315.712 kb on + strand, within EX31_RS09010 at 315.712 kb on + strand, within EX31_RS09010 at 315.724 kb on - strand, within EX31_RS09010 at 315.759 kb on + strand, within EX31_RS09010 at 315.759 kb on + strand, within EX31_RS09010 at 315.759 kb on + strand, within EX31_RS09010 at 315.760 kb on - strand, within EX31_RS09010 at 315.870 kb on + strand, within EX31_RS09010 at 315.871 kb on - strand, within EX31_RS09010 at 315.871 kb on - strand, within EX31_RS09010 at 315.871 kb on - strand, within EX31_RS09010 at 315.879 kb on + strand, within EX31_RS09010 at 315.879 kb on + strand, within EX31_RS09010 at 315.879 kb on + strand, within EX31_RS09010 at 315.879 kb on + strand, within EX31_RS09010 at 315.879 kb on + strand, within EX31_RS09010 at 315.879 kb on + strand, within EX31_RS09010 at 315.880 kb on - strand, within EX31_RS09010 at 315.880 kb on - strand, within EX31_RS09010 at 315.880 kb on - strand, within EX31_RS09010 at 315.880 kb on - strand, within EX31_RS09010 at 315.880 kb on - strand, within EX31_RS09010 at 315.881 kb on + strand, within EX31_RS09010 at 315.882 kb on - strand, within EX31_RS09010 at 315.890 kb on + strand, within EX31_RS09010 at 315.891 kb on - strand, within EX31_RS09010 at 315.891 kb on - strand, within EX31_RS09010 at 315.891 kb on - strand, within EX31_RS09010 at 315.891 kb on - strand, within EX31_RS09010 at 315.906 kb on - strand, within EX31_RS09010 at 315.906 kb on - strand, within EX31_RS09010 at 315.909 kb on + strand, within EX31_RS09010 at 315.910 kb on - strand, within EX31_RS09010 at 315.946 kb on + strand, within EX31_RS09010 at 315.947 kb on - strand, within EX31_RS09010 at 315.947 kb on - strand, within EX31_RS09010 at 315.947 kb on - strand, within EX31_RS09010 at 315.953 kb on + strand, within EX31_RS09010 at 315.953 kb on + strand, within EX31_RS09010 at 315.954 kb on - strand, within EX31_RS09010 at 315.985 kb on + strand, within EX31_RS09010 at 316.035 kb on + strand, within EX31_RS09010 at 316.035 kb on + strand, within EX31_RS09010 at 316.035 kb on + strand, within EX31_RS09010 at 316.036 kb on - strand, within EX31_RS09010 at 316.118 kb on - strand at 316.135 kb on + strand at 316.136 kb on - strand at 316.139 kb on + strand at 316.140 kb on - strand at 316.140 kb on - strand at 316.141 kb on + strand at 316.141 kb on + strand at 316.141 kb on + strand at 316.142 kb on - strand at 316.142 kb on - strand at 316.150 kb on + strand at 316.150 kb on + strand at 316.150 kb on + strand at 316.190 kb on + strand, within EX31_RS09015 at 316.190 kb on + strand, within EX31_RS09015 at 316.191 kb on - strand, within EX31_RS09015 at 316.356 kb on - strand, within EX31_RS09015 at 316.356 kb on - strand, within EX31_RS09015 at 316.357 kb on + strand, within EX31_RS09015 at 316.357 kb on + strand, within EX31_RS09015 at 316.357 kb on + strand, within EX31_RS09015 at 316.357 kb on + strand, within EX31_RS09015 at 316.357 kb on + strand, within EX31_RS09015 at 316.358 kb on - strand, within EX31_RS09015 at 316.358 kb on - strand, within EX31_RS09015 at 316.358 kb on - strand, within EX31_RS09015 at 316.358 kb on - strand, within EX31_RS09015 at 316.401 kb on + strand at 316.401 kb on + strand at 316.401 kb on + strand at 316.401 kb on + strand at 316.402 kb on - strand at 316.402 kb on - strand at 316.402 kb on - strand at 316.402 kb on - strand at 316.406 kb on + strand at 316.406 kb on + strand at 316.406 kb on + strand at 316.425 kb on - strand at 316.438 kb on + strand at 316.438 kb on + strand at 316.438 kb on + strand at 316.438 kb on + strand at 316.439 kb on - strand at 316.439 kb on - strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.570 kb on + strand, within EX31_RS09020 at 316.571 kb on - strand, within EX31_RS09020 at 316.605 kb on - strand, within EX31_RS09020 at 316.605 kb on - strand, within EX31_RS09020 at 316.606 kb on + strand, within EX31_RS09020 at 316.606 kb on + strand, within EX31_RS09020 at 316.606 kb on + strand, within EX31_RS09020 at 316.606 kb on + strand, within EX31_RS09020 at 316.606 kb on + strand, within EX31_RS09020 at 316.606 kb on + strand, within EX31_RS09020 at 316.606 kb on + strand, within EX31_RS09020 at 316.711 kb on - strand, within EX31_RS09020 at 316.716 kb on + strand, within EX31_RS09020 at 316.770 kb on - strand, within EX31_RS09020 at 316.770 kb on - strand, within EX31_RS09020 at 316.770 kb on - strand, within EX31_RS09020 at 316.870 kb on + strand, within EX31_RS09020 at 316.870 kb on + strand, within EX31_RS09020 at 316.870 kb on + strand, within EX31_RS09020 at 316.870 kb on + strand, within EX31_RS09020 at 316.901 kb on + strand, within EX31_RS09020 at 316.934 kb on + strand, within EX31_RS09020 at 316.991 kb on + strand, within EX31_RS09020 at 316.992 kb on - strand, within EX31_RS09020 at 316.992 kb on - strand, within EX31_RS09020 at 316.993 kb on + strand, within EX31_RS09020 at 316.993 kb on + strand, within EX31_RS09020 at 316.993 kb on + strand, within EX31_RS09020 at 316.994 kb on - strand, within EX31_RS09020 at 316.994 kb on - strand, within EX31_RS09020 at 317.046 kb on - strand, within EX31_RS09020 at 317.054 kb on + strand, within EX31_RS09020 at 317.095 kb on + strand, within EX31_RS09020 at 317.096 kb on - strand, within EX31_RS09020 at 317.096 kb on - strand, within EX31_RS09020 at 317.096 kb on - strand, within EX31_RS09020 at 317.149 kb on + strand, within EX31_RS09020 at 317.149 kb on + strand, within EX31_RS09020 at 317.149 kb on + strand, within EX31_RS09020 at 317.194 kb on + strand, within EX31_RS09020 at 317.195 kb on - strand, within EX31_RS09020 at 317.297 kb on + strand, within EX31_RS09020 at 317.298 kb on - strand, within EX31_RS09020 at 317.298 kb on - strand, within EX31_RS09020 at 317.367 kb on + strand at 317.367 kb on + strand at 317.367 kb on + strand at 317.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 315,196 + EX31_RS09005 0.58 -0.2 315,197 - EX31_RS09005 0.59 -0.2 315,197 - EX31_RS09005 0.59 -0.0 315,197 - EX31_RS09005 0.59 +0.0 315,201 + EX31_RS09005 0.59 -0.3 315,202 - EX31_RS09005 0.59 -0.4 315,202 - EX31_RS09005 0.59 +0.1 315,251 + EX31_RS09005 0.65 -0.5 315,251 + EX31_RS09005 0.65 -0.1 315,251 + EX31_RS09005 0.65 +0.1 315,251 + EX31_RS09005 0.65 +0.5 315,251 + EX31_RS09005 0.65 -1.4 315,252 - EX31_RS09005 0.65 +0.1 315,252 - EX31_RS09005 0.65 +0.5 315,298 - EX31_RS09005 0.70 -0.6 315,315 - EX31_RS09005 0.72 -0.9 315,391 + EX31_RS09005 0.80 -0.0 315,466 - EX31_RS09005 0.89 -0.9 315,499 + -0.4 315,500 - -0.1 315,511 + +1.3 315,522 + +0.2 315,528 - +0.2 315,528 - -0.4 315,532 + +0.7 315,532 + -0.1 315,532 + +0.4 315,533 - -1.2 315,572 + +0.2 315,623 + EX31_RS09010 0.13 -0.5 315,623 + EX31_RS09010 0.13 -0.1 315,625 + EX31_RS09010 0.13 +0.1 315,628 + EX31_RS09010 0.14 +0.9 315,629 - EX31_RS09010 0.14 +0.1 315,636 - EX31_RS09010 0.15 -0.4 315,642 + EX31_RS09010 0.16 -0.4 315,683 + EX31_RS09010 0.23 +0.1 315,683 + EX31_RS09010 0.23 +0.5 315,686 + EX31_RS09010 0.24 +0.5 315,686 + EX31_RS09010 0.24 +0.7 315,686 + EX31_RS09010 0.24 +0.1 315,687 - EX31_RS09010 0.24 +0.0 315,687 - EX31_RS09010 0.24 +0.3 315,687 - EX31_RS09010 0.24 -2.0 315,687 - EX31_RS09010 0.24 -0.2 315,688 + EX31_RS09010 0.24 -1.1 315,688 + EX31_RS09010 0.24 +0.1 315,689 - EX31_RS09010 0.25 +0.3 315,689 - EX31_RS09010 0.25 +0.7 315,689 - EX31_RS09010 0.25 -0.6 315,704 + EX31_RS09010 0.27 +0.5 315,712 + EX31_RS09010 0.29 +0.5 315,712 + EX31_RS09010 0.29 +0.2 315,712 + EX31_RS09010 0.29 +0.1 315,724 - EX31_RS09010 0.31 -0.4 315,759 + EX31_RS09010 0.37 +0.2 315,759 + EX31_RS09010 0.37 -0.2 315,759 + EX31_RS09010 0.37 -0.5 315,760 - EX31_RS09010 0.37 +0.3 315,870 + EX31_RS09010 0.57 +1.1 315,871 - EX31_RS09010 0.57 +0.4 315,871 - EX31_RS09010 0.57 -0.3 315,871 - EX31_RS09010 0.57 -0.2 315,879 + EX31_RS09010 0.59 +1.0 315,879 + EX31_RS09010 0.59 +0.5 315,879 + EX31_RS09010 0.59 +1.0 315,879 + EX31_RS09010 0.59 -0.2 315,879 + EX31_RS09010 0.59 +0.8 315,879 + EX31_RS09010 0.59 -0.3 315,880 - EX31_RS09010 0.59 -0.0 315,880 - EX31_RS09010 0.59 -0.4 315,880 - EX31_RS09010 0.59 -0.7 315,880 - EX31_RS09010 0.59 -0.7 315,880 - EX31_RS09010 0.59 -0.7 315,881 + EX31_RS09010 0.59 -0.1 315,882 - EX31_RS09010 0.59 +0.3 315,890 + EX31_RS09010 0.61 +0.5 315,891 - EX31_RS09010 0.61 +0.2 315,891 - EX31_RS09010 0.61 +0.4 315,891 - EX31_RS09010 0.61 -1.2 315,891 - EX31_RS09010 0.61 -0.0 315,906 - EX31_RS09010 0.63 -0.3 315,906 - EX31_RS09010 0.63 +0.3 315,909 + EX31_RS09010 0.64 +0.3 315,910 - EX31_RS09010 0.64 +0.4 315,946 + EX31_RS09010 0.71 -0.1 315,947 - EX31_RS09010 0.71 -0.0 315,947 - EX31_RS09010 0.71 -0.2 315,947 - EX31_RS09010 0.71 +1.0 315,953 + EX31_RS09010 0.72 +0.7 315,953 + EX31_RS09010 0.72 +0.4 315,954 - EX31_RS09010 0.72 -1.4 315,985 + EX31_RS09010 0.78 +0.6 316,035 + EX31_RS09010 0.87 +0.4 316,035 + EX31_RS09010 0.87 -0.4 316,035 + EX31_RS09010 0.87 -0.0 316,036 - EX31_RS09010 0.87 -0.0 316,118 - -1.6 316,135 + -0.5 316,136 - +0.4 316,139 + +0.2 316,140 - +2.1 316,140 - -0.4 316,141 + +0.4 316,141 + +0.6 316,141 + +0.2 316,142 - -0.9 316,142 - -0.3 316,150 + +0.4 316,150 + +0.2 316,150 + +0.3 316,190 + EX31_RS09015 0.21 +0.4 316,190 + EX31_RS09015 0.21 +0.0 316,191 - EX31_RS09015 0.21 -0.3 316,356 - EX31_RS09015 0.81 +0.4 316,356 - EX31_RS09015 0.81 +0.2 316,357 + EX31_RS09015 0.82 +0.2 316,357 + EX31_RS09015 0.82 +0.4 316,357 + EX31_RS09015 0.82 -0.2 316,357 + EX31_RS09015 0.82 -1.0 316,357 + EX31_RS09015 0.82 +0.1 316,358 - EX31_RS09015 0.82 +0.6 316,358 - EX31_RS09015 0.82 -0.2 316,358 - EX31_RS09015 0.82 -0.4 316,358 - EX31_RS09015 0.82 +0.5 316,401 + +0.8 316,401 + +0.2 316,401 + +1.0 316,401 + -0.3 316,402 - +0.2 316,402 - +0.8 316,402 - -0.6 316,402 - -0.4 316,406 + -0.1 316,406 + -0.2 316,406 + -0.2 316,425 - -0.0 316,438 + +0.2 316,438 + -0.0 316,438 + +0.0 316,438 + -0.3 316,439 - +0.3 316,439 - -0.9 316,441 + +0.6 316,441 + +0.1 316,441 + +0.2 316,441 + +0.3 316,441 + +0.1 316,441 + -0.3 316,442 - -0.9 316,442 - -0.9 316,570 + EX31_RS09020 0.14 +0.6 316,571 - EX31_RS09020 0.14 -0.6 316,605 - EX31_RS09020 0.18 -0.6 316,605 - EX31_RS09020 0.18 -0.2 316,606 + EX31_RS09020 0.18 -0.1 316,606 + EX31_RS09020 0.18 +0.8 316,606 + EX31_RS09020 0.18 +0.5 316,606 + EX31_RS09020 0.18 +0.5 316,606 + EX31_RS09020 0.18 -0.3 316,606 + EX31_RS09020 0.18 +0.1 316,606 + EX31_RS09020 0.18 +0.1 316,711 - EX31_RS09020 0.28 -0.5 316,716 + EX31_RS09020 0.29 -0.3 316,770 - EX31_RS09020 0.35 -1.1 316,770 - EX31_RS09020 0.35 -1.4 316,770 - EX31_RS09020 0.35 -0.1 316,870 + EX31_RS09020 0.45 -0.7 316,870 + EX31_RS09020 0.45 +0.3 316,870 + EX31_RS09020 0.45 +0.2 316,870 + EX31_RS09020 0.45 +0.4 316,901 + EX31_RS09020 0.48 +0.4 316,934 + EX31_RS09020 0.51 +1.0 316,991 + EX31_RS09020 0.57 +0.9 316,992 - EX31_RS09020 0.57 +0.2 316,992 - EX31_RS09020 0.57 -0.3 316,993 + EX31_RS09020 0.58 -0.6 316,993 + EX31_RS09020 0.58 -0.0 316,993 + EX31_RS09020 0.58 +0.7 316,994 - EX31_RS09020 0.58 -0.3 316,994 - EX31_RS09020 0.58 -0.5 317,046 - EX31_RS09020 0.63 +0.7 317,054 + EX31_RS09020 0.64 -0.4 317,095 + EX31_RS09020 0.68 +0.8 317,096 - EX31_RS09020 0.68 -0.3 317,096 - EX31_RS09020 0.68 -0.8 317,096 - EX31_RS09020 0.68 +0.6 317,149 + EX31_RS09020 0.74 -0.1 317,149 + EX31_RS09020 0.74 +0.2 317,149 + EX31_RS09020 0.74 +0.3 317,194 + EX31_RS09020 0.78 +1.1 317,195 - EX31_RS09020 0.78 +0.1 317,297 + EX31_RS09020 0.89 +0.1 317,298 - EX31_RS09020 0.89 +0.2 317,298 - EX31_RS09020 0.89 +0.2 317,367 + -1.3 317,367 + -0.7 317,367 + +0.2 317,368 - +0.5
Or see this region's nucleotide sequence