Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02880 and EX31_RS02885 are separated by 118 nucleotides EX31_RS02885 and EX31_RS02890 are separated by 8 nucleotides
EX31_RS02880: EX31_RS02880 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 51,512 to 52,933
_RS02880
EX31_RS02885: EX31_RS02885 - glycosyltransferase family 2 protein, at 53,052 to 54,041
_RS02885
EX31_RS02890: EX31_RS02890 - lipopolysaccharide biosynthesis protein, at 54,050 to 55,513
_RS02890
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1 at 52.131 kb on - strand, within EX31_RS02880 at 52.201 kb on + strand, within EX31_RS02880 at 52.246 kb on + strand, within EX31_RS02880 at 52.283 kb on + strand, within EX31_RS02880 at 52.356 kb on + strand, within EX31_RS02880 at 52.357 kb on - strand, within EX31_RS02880 at 52.360 kb on - strand, within EX31_RS02880 at 52.473 kb on + strand, within EX31_RS02880 at 52.473 kb on + strand, within EX31_RS02880 at 52.474 kb on - strand, within EX31_RS02880 at 52.480 kb on - strand, within EX31_RS02880 at 52.546 kb on + strand, within EX31_RS02880 at 52.547 kb on - strand, within EX31_RS02880 at 52.617 kb on - strand, within EX31_RS02880 at 52.617 kb on - strand, within EX31_RS02880 at 52.660 kb on + strand, within EX31_RS02880 at 52.663 kb on + strand, within EX31_RS02880 at 52.663 kb on + strand, within EX31_RS02880 at 52.664 kb on - strand, within EX31_RS02880 at 52.699 kb on + strand, within EX31_RS02880 at 52.702 kb on + strand, within EX31_RS02880 at 52.702 kb on + strand, within EX31_RS02880 at 52.702 kb on + strand, within EX31_RS02880 at 52.703 kb on - strand, within EX31_RS02880 at 52.961 kb on - strand at 53.170 kb on + strand, within EX31_RS02885 at 53.264 kb on - strand, within EX31_RS02885 at 53.264 kb on - strand, within EX31_RS02885 at 53.268 kb on - strand, within EX31_RS02885 at 53.306 kb on + strand, within EX31_RS02885 at 53.337 kb on - strand, within EX31_RS02885 at 53.342 kb on - strand, within EX31_RS02885 at 53.404 kb on + strand, within EX31_RS02885 at 53.405 kb on - strand, within EX31_RS02885 at 53.495 kb on + strand, within EX31_RS02885 at 53.495 kb on + strand, within EX31_RS02885 at 53.495 kb on + strand, within EX31_RS02885 at 53.496 kb on - strand, within EX31_RS02885 at 53.496 kb on - strand, within EX31_RS02885 at 53.498 kb on + strand, within EX31_RS02885 at 53.552 kb on - strand, within EX31_RS02885 at 53.559 kb on + strand, within EX31_RS02885 at 53.602 kb on - strand, within EX31_RS02885 at 53.607 kb on - strand, within EX31_RS02885 at 53.769 kb on - strand, within EX31_RS02885 at 53.787 kb on - strand, within EX31_RS02885 at 53.799 kb on - strand, within EX31_RS02885 at 53.928 kb on + strand, within EX31_RS02885 at 53.945 kb on - strand at 53.997 kb on - strand at 54.007 kb on - strand at 54.015 kb on - strand at 54.198 kb on + strand, within EX31_RS02890 at 54.198 kb on + strand, within EX31_RS02890 at 54.198 kb on + strand, within EX31_RS02890 at 54.199 kb on - strand, within EX31_RS02890 at 54.199 kb on - strand, within EX31_RS02890 at 54.199 kb on - strand, within EX31_RS02890 at 54.254 kb on - strand, within EX31_RS02890 at 54.254 kb on - strand, within EX31_RS02890 at 54.270 kb on + strand, within EX31_RS02890 at 54.478 kb on + strand, within EX31_RS02890 at 54.551 kb on - strand, within EX31_RS02890 at 54.630 kb on - strand, within EX31_RS02890 at 54.630 kb on - strand, within EX31_RS02890 at 54.633 kb on + strand, within EX31_RS02890 at 54.634 kb on - strand, within EX31_RS02890 at 54.634 kb on - strand, within EX31_RS02890 at 54.743 kb on - strand, within EX31_RS02890 at 54.743 kb on - strand, within EX31_RS02890 at 54.743 kb on - strand, within EX31_RS02890 at 54.746 kb on - strand, within EX31_RS02890 at 54.752 kb on - strand, within EX31_RS02890 at 54.769 kb on - strand, within EX31_RS02890 at 54.799 kb on - strand, within EX31_RS02890 at 54.945 kb on - strand, within EX31_RS02890 at 54.945 kb on - strand, within EX31_RS02890 at 54.983 kb on + strand, within EX31_RS02890 at 54.983 kb on + strand, within EX31_RS02890 at 54.984 kb on - strand, within EX31_RS02890 at 54.984 kb on - strand, within EX31_RS02890 at 55.009 kb on - strand, within EX31_RS02890 at 55.009 kb on - strand, within EX31_RS02890 at 55.009 kb on - strand, within EX31_RS02890 at 55.016 kb on + strand, within EX31_RS02890
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 52,131 - EX31_RS02880 0.44 +0.7 52,201 + EX31_RS02880 0.48 -0.8 52,246 + EX31_RS02880 0.52 +0.2 52,283 + EX31_RS02880 0.54 +0.7 52,356 + EX31_RS02880 0.59 +0.6 52,357 - EX31_RS02880 0.59 -0.6 52,360 - EX31_RS02880 0.60 -0.7 52,473 + EX31_RS02880 0.68 -0.5 52,473 + EX31_RS02880 0.68 -0.3 52,474 - EX31_RS02880 0.68 -0.2 52,480 - EX31_RS02880 0.68 -0.5 52,546 + EX31_RS02880 0.73 +0.1 52,547 - EX31_RS02880 0.73 -0.5 52,617 - EX31_RS02880 0.78 -0.6 52,617 - EX31_RS02880 0.78 -0.5 52,660 + EX31_RS02880 0.81 +1.3 52,663 + EX31_RS02880 0.81 -0.2 52,663 + EX31_RS02880 0.81 +0.2 52,664 - EX31_RS02880 0.81 -0.3 52,699 + EX31_RS02880 0.83 -0.6 52,702 + EX31_RS02880 0.84 -0.7 52,702 + EX31_RS02880 0.84 -0.8 52,702 + EX31_RS02880 0.84 -2.2 52,703 - EX31_RS02880 0.84 -0.4 52,961 - +0.3 53,170 + EX31_RS02885 0.12 -0.4 53,264 - EX31_RS02885 0.21 +0.6 53,264 - EX31_RS02885 0.21 -0.3 53,268 - EX31_RS02885 0.22 -0.9 53,306 + EX31_RS02885 0.26 -1.8 53,337 - EX31_RS02885 0.29 -0.1 53,342 - EX31_RS02885 0.29 -0.3 53,404 + EX31_RS02885 0.36 -0.4 53,405 - EX31_RS02885 0.36 -0.3 53,495 + EX31_RS02885 0.45 -1.6 53,495 + EX31_RS02885 0.45 +0.9 53,495 + EX31_RS02885 0.45 -0.3 53,496 - EX31_RS02885 0.45 -0.8 53,496 - EX31_RS02885 0.45 +0.6 53,498 + EX31_RS02885 0.45 -0.1 53,552 - EX31_RS02885 0.51 +0.3 53,559 + EX31_RS02885 0.51 -1.0 53,602 - EX31_RS02885 0.56 -0.6 53,607 - EX31_RS02885 0.56 -0.1 53,769 - EX31_RS02885 0.72 -1.5 53,787 - EX31_RS02885 0.74 -1.7 53,799 - EX31_RS02885 0.75 -0.5 53,928 + EX31_RS02885 0.88 -1.8 53,945 - +0.0 53,997 - -0.3 54,007 - -0.8 54,015 - +0.2 54,198 + EX31_RS02890 0.10 -0.5 54,198 + EX31_RS02890 0.10 +1.3 54,198 + EX31_RS02890 0.10 +0.2 54,199 - EX31_RS02890 0.10 +0.0 54,199 - EX31_RS02890 0.10 -1.5 54,199 - EX31_RS02890 0.10 +0.3 54,254 - EX31_RS02890 0.14 -0.4 54,254 - EX31_RS02890 0.14 -1.0 54,270 + EX31_RS02890 0.15 -0.6 54,478 + EX31_RS02890 0.29 -0.5 54,551 - EX31_RS02890 0.34 -0.8 54,630 - EX31_RS02890 0.40 -0.2 54,630 - EX31_RS02890 0.40 -0.1 54,633 + EX31_RS02890 0.40 +0.5 54,634 - EX31_RS02890 0.40 +0.1 54,634 - EX31_RS02890 0.40 +0.2 54,743 - EX31_RS02890 0.47 +0.3 54,743 - EX31_RS02890 0.47 +0.1 54,743 - EX31_RS02890 0.47 +0.5 54,746 - EX31_RS02890 0.48 -0.1 54,752 - EX31_RS02890 0.48 -1.2 54,769 - EX31_RS02890 0.49 -0.1 54,799 - EX31_RS02890 0.51 -0.1 54,945 - EX31_RS02890 0.61 -0.3 54,945 - EX31_RS02890 0.61 -1.2 54,983 + EX31_RS02890 0.64 -0.6 54,983 + EX31_RS02890 0.64 +0.7 54,984 - EX31_RS02890 0.64 +0.0 54,984 - EX31_RS02890 0.64 -0.7 55,009 - EX31_RS02890 0.66 -1.4 55,009 - EX31_RS02890 0.66 -0.4 55,009 - EX31_RS02890 0.66 +0.2 55,016 + EX31_RS02890 0.66 -0.6
Or see this region's nucleotide sequence