Strain Fitness in Rahnella sp. WP5 around EX31_RS01955

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01950 and EX31_RS01955 overlap by 4 nucleotidesEX31_RS01955 and EX31_RS01960 are separated by 39 nucleotidesEX31_RS01960 and EX31_RS01965 are separated by 39 nucleotides EX31_RS01950: EX31_RS01950 - DUF2235 domain-containing protein, at 427,940 to 429,523 _RS01950 EX31_RS01955: EX31_RS01955 - DUF2931 family protein, at 429,520 to 430,167 _RS01955 EX31_RS01960: EX31_RS01960 - DUF2931 family protein, at 430,207 to 430,854 _RS01960 EX31_RS01965: EX31_RS01965 - DUF2931 family protein, at 430,894 to 431,544 _RS01965 Position (kb) 429 430 431Strain fitness (log2 ratio) -2 -1 0 1at 428.701 kb on - strand, within EX31_RS01950at 428.839 kb on - strand, within EX31_RS01950at 428.861 kb on + strand, within EX31_RS01950at 428.973 kb on + strand, within EX31_RS01950at 429.028 kb on + strand, within EX31_RS01950at 429.044 kb on + strand, within EX31_RS01950at 429.044 kb on + strand, within EX31_RS01950at 429.044 kb on + strand, within EX31_RS01950at 429.050 kb on + strand, within EX31_RS01950at 429.051 kb on - strand, within EX31_RS01950at 429.076 kb on + strand, within EX31_RS01950at 429.124 kb on + strand, within EX31_RS01950at 429.124 kb on + strand, within EX31_RS01950at 429.124 kb on + strand, within EX31_RS01950at 429.124 kb on + strand, within EX31_RS01950at 429.124 kb on + strand, within EX31_RS01950at 429.124 kb on + strand, within EX31_RS01950at 429.125 kb on - strand, within EX31_RS01950at 429.125 kb on - strand, within EX31_RS01950at 429.168 kb on + strand, within EX31_RS01950at 429.193 kb on + strand, within EX31_RS01950at 429.193 kb on + strand, within EX31_RS01950at 429.194 kb on - strand, within EX31_RS01950at 429.195 kb on + strand, within EX31_RS01950at 429.289 kb on + strand, within EX31_RS01950at 429.291 kb on + strand, within EX31_RS01950at 429.330 kb on + strand, within EX31_RS01950at 429.347 kb on + strand, within EX31_RS01950at 429.347 kb on + strand, within EX31_RS01950at 429.347 kb on + strand, within EX31_RS01950at 429.381 kb on + strandat 429.385 kb on + strandat 429.577 kb on - strandat 429.636 kb on + strand, within EX31_RS01955at 429.636 kb on + strand, within EX31_RS01955at 429.697 kb on + strand, within EX31_RS01955at 429.704 kb on - strand, within EX31_RS01955at 429.834 kb on + strand, within EX31_RS01955at 429.867 kb on - strand, within EX31_RS01955at 430.030 kb on - strand, within EX31_RS01955at 430.287 kb on + strand, within EX31_RS01960at 430.405 kb on - strand, within EX31_RS01960at 430.448 kb on - strand, within EX31_RS01960at 430.474 kb on - strand, within EX31_RS01960at 430.628 kb on - strand, within EX31_RS01960at 430.755 kb on + strand, within EX31_RS01960at 430.756 kb on - strand, within EX31_RS01960at 430.871 kb on - strandat 430.875 kb on - strandat 431.003 kb on - strand, within EX31_RS01965at 431.013 kb on + strand, within EX31_RS01965at 431.014 kb on - strand, within EX31_RS01965at 431.064 kb on + strand, within EX31_RS01965at 431.164 kb on - strand, within EX31_RS01965

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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428,701 - EX31_RS01950 0.48 +1.0
428,839 - EX31_RS01950 0.57 -0.2
428,861 + EX31_RS01950 0.58 -0.3
428,973 + EX31_RS01950 0.65 +0.3
429,028 + EX31_RS01950 0.69 -0.1
429,044 + EX31_RS01950 0.70 -0.4
429,044 + EX31_RS01950 0.70 +0.9
429,044 + EX31_RS01950 0.70 +0.5
429,050 + EX31_RS01950 0.70 +0.1
429,051 - EX31_RS01950 0.70 -0.9
429,076 + EX31_RS01950 0.72 +0.3
429,124 + EX31_RS01950 0.75 -0.1
429,124 + EX31_RS01950 0.75 +0.2
429,124 + EX31_RS01950 0.75 +1.2
429,124 + EX31_RS01950 0.75 -0.7
429,124 + EX31_RS01950 0.75 +0.6
429,124 + EX31_RS01950 0.75 +0.6
429,125 - EX31_RS01950 0.75 +0.4
429,125 - EX31_RS01950 0.75 -0.7
429,168 + EX31_RS01950 0.78 +0.6
429,193 + EX31_RS01950 0.79 +0.4
429,193 + EX31_RS01950 0.79 -0.8
429,194 - EX31_RS01950 0.79 -0.1
429,195 + EX31_RS01950 0.79 -2.4
429,289 + EX31_RS01950 0.85 +1.2
429,291 + EX31_RS01950 0.85 -0.2
429,330 + EX31_RS01950 0.88 +1.1
429,347 + EX31_RS01950 0.89 +1.5
429,347 + EX31_RS01950 0.89 +0.7
429,347 + EX31_RS01950 0.89 -1.2
429,381 + +0.7
429,385 + +1.4
429,577 - +0.5
429,636 + EX31_RS01955 0.18 -1.1
429,636 + EX31_RS01955 0.18 -0.1
429,697 + EX31_RS01955 0.27 -0.9
429,704 - EX31_RS01955 0.28 -0.3
429,834 + EX31_RS01955 0.48 -0.4
429,867 - EX31_RS01955 0.54 -1.1
430,030 - EX31_RS01955 0.79 +0.3
430,287 + EX31_RS01960 0.12 -1.1
430,405 - EX31_RS01960 0.31 +0.2
430,448 - EX31_RS01960 0.37 -1.8
430,474 - EX31_RS01960 0.41 -0.6
430,628 - EX31_RS01960 0.65 -0.5
430,755 + EX31_RS01960 0.85 -1.2
430,756 - EX31_RS01960 0.85 -0.9
430,871 - +0.7
430,875 - -1.1
431,003 - EX31_RS01965 0.17 +0.6
431,013 + EX31_RS01965 0.18 -0.4
431,014 - EX31_RS01965 0.18 -0.5
431,064 + EX31_RS01965 0.26 -0.5
431,164 - EX31_RS01965 0.41 -1.1

Or see this region's nucleotide sequence