Strain Fitness in Rahnella sp. WP5 around EX31_RS19965

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19960 and EX31_RS19965 are separated by 11 nucleotidesEX31_RS19965 and EX31_RS19970 are separated by 90 nucleotidesEX31_RS19970 and EX31_RS19975 are separated by 39 nucleotides EX31_RS19960: EX31_RS19960 - HoxN/HupN/NixA family nickel/cobalt transporter, at 623,203 to 624,228 _RS19960 EX31_RS19965: EX31_RS19965 - hypothetical protein, at 624,240 to 624,569 _RS19965 EX31_RS19970: EX31_RS19970 - curlin, at 624,660 to 625,136 _RS19970 EX31_RS19975: EX31_RS19975 - curlin, at 625,176 to 625,664 _RS19975 Position (kb) 624 625Strain fitness (log2 ratio) -2 -1 0 1 2at 623.347 kb on + strand, within EX31_RS19960at 623.348 kb on - strand, within EX31_RS19960at 623.385 kb on + strand, within EX31_RS19960at 623.385 kb on + strand, within EX31_RS19960at 623.385 kb on + strand, within EX31_RS19960at 623.386 kb on - strand, within EX31_RS19960at 623.386 kb on - strand, within EX31_RS19960at 623.386 kb on - strand, within EX31_RS19960at 623.395 kb on - strand, within EX31_RS19960at 623.554 kb on + strand, within EX31_RS19960at 623.554 kb on + strand, within EX31_RS19960at 623.554 kb on + strand, within EX31_RS19960at 623.743 kb on - strand, within EX31_RS19960at 623.743 kb on - strand, within EX31_RS19960at 623.754 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.771 kb on - strand, within EX31_RS19960at 623.771 kb on - strand, within EX31_RS19960at 623.771 kb on - strand, within EX31_RS19960at 623.771 kb on - strand, within EX31_RS19960at 623.990 kb on - strand, within EX31_RS19960at 623.990 kb on - strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.993 kb on - strand, within EX31_RS19960at 623.993 kb on - strand, within EX31_RS19960at 623.993 kb on - strand, within EX31_RS19960at 624.006 kb on + strand, within EX31_RS19960at 624.006 kb on + strand, within EX31_RS19960at 624.083 kb on + strand, within EX31_RS19960at 624.083 kb on + strand, within EX31_RS19960at 624.096 kb on - strand, within EX31_RS19960at 624.126 kb on + strandat 624.190 kb on - strandat 624.208 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.261 kb on - strandat 624.297 kb on - strand, within EX31_RS19965at 624.297 kb on - strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.309 kb on - strand, within EX31_RS19965at 624.309 kb on - strand, within EX31_RS19965at 624.309 kb on - strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.497 kb on - strand, within EX31_RS19965at 624.497 kb on - strand, within EX31_RS19965at 624.497 kb on - strand, within EX31_RS19965at 624.519 kb on - strand, within EX31_RS19965at 624.561 kb on + strandat 624.562 kb on - strandat 624.562 kb on - strandat 624.577 kb on - strandat 624.609 kb on + strandat 624.627 kb on + strandat 624.627 kb on + strandat 624.627 kb on + strandat 624.657 kb on + strandat 624.658 kb on - strandat 624.658 kb on - strandat 624.676 kb on + strandat 624.705 kb on - strandat 624.705 kb on - strandat 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.753 kb on - strand, within EX31_RS19970at 624.753 kb on - strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.821 kb on - strand, within EX31_RS19970at 624.821 kb on - strand, within EX31_RS19970at 624.821 kb on - strand, within EX31_RS19970at 624.834 kb on + strand, within EX31_RS19970at 624.834 kb on + strand, within EX31_RS19970at 624.881 kb on + strand, within EX31_RS19970at 624.889 kb on + strand, within EX31_RS19970at 624.971 kb on - strand, within EX31_RS19970at 624.971 kb on - strand, within EX31_RS19970at 625.037 kb on + strand, within EX31_RS19970at 625.101 kb on + strandat 625.101 kb on + strandat 625.102 kb on - strandat 625.102 kb on - strandat 625.155 kb on + strandat 625.155 kb on + strandat 625.156 kb on - strandat 625.156 kb on - strandat 625.156 kb on - strandat 625.288 kb on + strand, within EX31_RS19975at 625.288 kb on + strand, within EX31_RS19975at 625.288 kb on + strand, within EX31_RS19975at 625.288 kb on + strand, within EX31_RS19975at 625.288 kb on + strand, within EX31_RS19975at 625.289 kb on - strand, within EX31_RS19975at 625.348 kb on - strand, within EX31_RS19975at 625.362 kb on - strand, within EX31_RS19975at 625.362 kb on - strand, within EX31_RS19975at 625.362 kb on - strand, within EX31_RS19975at 625.380 kb on + strand, within EX31_RS19975at 625.382 kb on + strand, within EX31_RS19975at 625.424 kb on + strand, within EX31_RS19975at 625.425 kb on - strand, within EX31_RS19975at 625.497 kb on - strand, within EX31_RS19975

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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623,347 + EX31_RS19960 0.14 -0.2
623,348 - EX31_RS19960 0.14 -1.3
623,385 + EX31_RS19960 0.18 +0.5
623,385 + EX31_RS19960 0.18 -0.3
623,385 + EX31_RS19960 0.18 -0.3
623,386 - EX31_RS19960 0.18 -0.2
623,386 - EX31_RS19960 0.18 -0.5
623,386 - EX31_RS19960 0.18 -0.2
623,395 - EX31_RS19960 0.19 -0.0
623,554 + EX31_RS19960 0.34 -0.2
623,554 + EX31_RS19960 0.34 +0.8
623,554 + EX31_RS19960 0.34 -0.3
623,743 - EX31_RS19960 0.53 -0.1
623,743 - EX31_RS19960 0.53 +0.2
623,754 + EX31_RS19960 0.54 -0.5
623,770 + EX31_RS19960 0.55 -0.5
623,770 + EX31_RS19960 0.55 +0.1
623,770 + EX31_RS19960 0.55 +0.3
623,770 + EX31_RS19960 0.55 +0.1
623,770 + EX31_RS19960 0.55 +0.4
623,770 + EX31_RS19960 0.55 +0.9
623,770 + EX31_RS19960 0.55 -0.6
623,770 + EX31_RS19960 0.55 +1.4
623,770 + EX31_RS19960 0.55 +0.5
623,771 - EX31_RS19960 0.55 -1.0
623,771 - EX31_RS19960 0.55 -1.2
623,771 - EX31_RS19960 0.55 -0.7
623,771 - EX31_RS19960 0.55 -0.2
623,990 - EX31_RS19960 0.77 +0.1
623,990 - EX31_RS19960 0.77 +0.5
623,992 + EX31_RS19960 0.77 +0.4
623,992 + EX31_RS19960 0.77 -0.4
623,992 + EX31_RS19960 0.77 +0.0
623,992 + EX31_RS19960 0.77 -0.6
623,992 + EX31_RS19960 0.77 +0.4
623,992 + EX31_RS19960 0.77 +1.1
623,992 + EX31_RS19960 0.77 +1.2
623,993 - EX31_RS19960 0.77 -0.7
623,993 - EX31_RS19960 0.77 -1.2
623,993 - EX31_RS19960 0.77 -1.6
624,006 + EX31_RS19960 0.78 -0.9
624,006 + EX31_RS19960 0.78 -0.6
624,083 + EX31_RS19960 0.86 -2.3
624,083 + EX31_RS19960 0.86 -0.1
624,096 - EX31_RS19960 0.87 -2.4
624,126 + -0.2
624,190 - -1.4
624,208 + -0.4
624,260 + +1.1
624,260 + +0.0
624,260 + +0.7
624,260 + -0.0
624,260 + -0.8
624,260 + +0.1
624,261 - -0.5
624,297 - EX31_RS19965 0.17 -0.0
624,297 - EX31_RS19965 0.17 +0.5
624,308 + EX31_RS19965 0.21 -0.2
624,308 + EX31_RS19965 0.21 +0.1
624,308 + EX31_RS19965 0.21 +0.4
624,308 + EX31_RS19965 0.21 +0.1
624,309 - EX31_RS19965 0.21 +0.7
624,309 - EX31_RS19965 0.21 -0.9
624,309 - EX31_RS19965 0.21 +0.6
624,491 + EX31_RS19965 0.76 +0.7
624,491 + EX31_RS19965 0.76 +0.9
624,491 + EX31_RS19965 0.76 -0.8
624,491 + EX31_RS19965 0.76 +0.7
624,496 + EX31_RS19965 0.78 +2.1
624,496 + EX31_RS19965 0.78 -0.3
624,496 + EX31_RS19965 0.78 +0.7
624,496 + EX31_RS19965 0.78 +0.2
624,496 + EX31_RS19965 0.78 +0.4
624,496 + EX31_RS19965 0.78 -0.1
624,497 - EX31_RS19965 0.78 -0.1
624,497 - EX31_RS19965 0.78 -0.5
624,497 - EX31_RS19965 0.78 -1.0
624,519 - EX31_RS19965 0.85 +0.5
624,561 + +0.1
624,562 - +0.2
624,562 - -0.9
624,577 - -1.1
624,609 + +0.1
624,627 + +0.3
624,627 + +1.1
624,627 + +0.8
624,657 + -0.3
624,658 - +0.2
624,658 - +0.4
624,676 + +0.4
624,705 - +0.7
624,705 - -0.7
624,748 + EX31_RS19970 0.18 -0.2
624,748 + EX31_RS19970 0.18 +0.3
624,748 + EX31_RS19970 0.18 -0.8
624,748 + EX31_RS19970 0.18 +0.5
624,748 + EX31_RS19970 0.18 -0.7
624,748 + EX31_RS19970 0.18 -0.3
624,748 + EX31_RS19970 0.18 -0.3
624,748 + EX31_RS19970 0.18 +0.0
624,748 + EX31_RS19970 0.18 -0.4
624,748 + EX31_RS19970 0.18 -2.0
624,749 - EX31_RS19970 0.19 +0.5
624,749 - EX31_RS19970 0.19 +0.2
624,749 - EX31_RS19970 0.19 -0.2
624,749 - EX31_RS19970 0.19 -1.1
624,749 - EX31_RS19970 0.19 +0.2
624,749 - EX31_RS19970 0.19 +0.6
624,749 - EX31_RS19970 0.19 +0.2
624,749 - EX31_RS19970 0.19 -0.4
624,749 - EX31_RS19970 0.19 -0.9
624,749 - EX31_RS19970 0.19 +0.1
624,749 - EX31_RS19970 0.19 -0.5
624,749 - EX31_RS19970 0.19 +0.0
624,749 - EX31_RS19970 0.19 +0.3
624,749 - EX31_RS19970 0.19 +0.1
624,749 - EX31_RS19970 0.19 +0.6
624,749 - EX31_RS19970 0.19 -0.1
624,749 - EX31_RS19970 0.19 -0.1
624,753 - EX31_RS19970 0.19 -0.8
624,753 - EX31_RS19970 0.19 -0.0
624,820 + EX31_RS19970 0.34 -0.1
624,820 + EX31_RS19970 0.34 -0.1
624,820 + EX31_RS19970 0.34 -1.3
624,820 + EX31_RS19970 0.34 -0.0
624,820 + EX31_RS19970 0.34 -0.3
624,820 + EX31_RS19970 0.34 +0.4
624,820 + EX31_RS19970 0.34 -0.0
624,821 - EX31_RS19970 0.34 +0.5
624,821 - EX31_RS19970 0.34 +0.4
624,821 - EX31_RS19970 0.34 +0.1
624,834 + EX31_RS19970 0.36 -0.6
624,834 + EX31_RS19970 0.36 -0.5
624,881 + EX31_RS19970 0.46 -0.1
624,889 + EX31_RS19970 0.48 +0.1
624,971 - EX31_RS19970 0.65 -0.1
624,971 - EX31_RS19970 0.65 +0.1
625,037 + EX31_RS19970 0.79 -0.3
625,101 + -0.8
625,101 + +0.5
625,102 - -0.8
625,102 - +0.4
625,155 + -0.0
625,155 + +0.9
625,156 - +0.8
625,156 - -0.5
625,156 - +0.7
625,288 + EX31_RS19975 0.23 +0.2
625,288 + EX31_RS19975 0.23 +1.1
625,288 + EX31_RS19975 0.23 +0.0
625,288 + EX31_RS19975 0.23 -0.5
625,288 + EX31_RS19975 0.23 -2.3
625,289 - EX31_RS19975 0.23 +0.3
625,348 - EX31_RS19975 0.35 -0.2
625,362 - EX31_RS19975 0.38 -0.6
625,362 - EX31_RS19975 0.38 -1.0
625,362 - EX31_RS19975 0.38 -0.2
625,380 + EX31_RS19975 0.42 +1.4
625,382 + EX31_RS19975 0.42 +0.9
625,424 + EX31_RS19975 0.51 -1.4
625,425 - EX31_RS19975 0.51 -0.0
625,497 - EX31_RS19975 0.66 -0.2

Or see this region's nucleotide sequence