Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19935 and EX31_RS19940 overlap by 8 nucleotides EX31_RS19940 and EX31_RS19945 are separated by 329 nucleotides EX31_RS19945 and EX31_RS19950 are separated by 23 nucleotides
EX31_RS19935: EX31_RS19935 - formate hydrogenlyase maturation protein HycH, at 616,776 to 617,255
_RS19935
EX31_RS19940: EX31_RS19940 - hydrogenase maturation peptidase HycI, at 617,248 to 617,733
_RS19940
EX31_RS19945: EX31_RS19945 - electron transport protein HydN, at 618,063 to 618,608
_RS19945
EX31_RS19950: EX31_RS19950 - formate dehydrogenase subunit alpha, at 618,632 to 620,803
_RS19950
Position (kb) 618
619 Strain fitness (log2 ratio) -2
-1
0
1 at 617.148 kb on + strand, within EX31_RS19935 at 617.149 kb on - strand, within EX31_RS19935 at 617.159 kb on + strand, within EX31_RS19935 at 617.159 kb on + strand, within EX31_RS19935 at 617.159 kb on + strand, within EX31_RS19935 at 617.226 kb on + strand at 617.226 kb on + strand at 617.226 kb on + strand at 617.227 kb on - strand at 617.227 kb on - strand at 617.227 kb on - strand at 617.244 kb on + strand at 617.244 kb on + strand at 617.244 kb on + strand at 617.244 kb on + strand at 617.245 kb on - strand at 617.245 kb on - strand at 617.245 kb on - strand at 617.258 kb on + strand at 617.258 kb on + strand at 617.554 kb on - strand, within EX31_RS19940 at 617.624 kb on - strand, within EX31_RS19940 at 617.624 kb on - strand, within EX31_RS19940 at 617.624 kb on - strand, within EX31_RS19940 at 617.624 kb on - strand, within EX31_RS19940 at 617.668 kb on + strand, within EX31_RS19940 at 617.668 kb on + strand, within EX31_RS19940 at 617.668 kb on + strand, within EX31_RS19940 at 617.669 kb on - strand, within EX31_RS19940 at 617.749 kb on + strand at 617.749 kb on + strand at 617.749 kb on + strand at 617.750 kb on - strand at 617.750 kb on - strand at 617.750 kb on - strand at 617.807 kb on - strand at 617.838 kb on + strand at 617.873 kb on - strand at 617.876 kb on + strand at 617.876 kb on + strand at 617.876 kb on + strand at 617.876 kb on + strand at 617.876 kb on + strand at 617.876 kb on + strand at 617.876 kb on + strand at 617.876 kb on + strand at 617.876 kb on + strand at 617.876 kb on + strand at 617.876 kb on + strand at 617.877 kb on - strand at 617.877 kb on - strand at 617.877 kb on - strand at 617.877 kb on - strand at 617.877 kb on - strand at 617.877 kb on - strand at 617.877 kb on - strand at 617.877 kb on - strand at 617.877 kb on - strand at 617.878 kb on + strand at 617.878 kb on + strand at 617.878 kb on + strand at 617.878 kb on + strand at 617.878 kb on + strand at 617.878 kb on + strand at 617.878 kb on + strand at 617.878 kb on + strand at 617.879 kb on - strand at 617.879 kb on - strand at 617.879 kb on - strand at 617.884 kb on + strand at 617.898 kb on + strand at 617.911 kb on + strand at 617.911 kb on + strand at 617.912 kb on - strand at 618.074 kb on + strand at 618.075 kb on - strand at 618.075 kb on - strand at 618.110 kb on + strand at 618.111 kb on - strand at 618.155 kb on + strand, within EX31_RS19945 at 618.200 kb on + strand, within EX31_RS19945 at 618.203 kb on + strand, within EX31_RS19945 at 618.203 kb on + strand, within EX31_RS19945 at 618.203 kb on + strand, within EX31_RS19945 at 618.204 kb on - strand, within EX31_RS19945 at 618.204 kb on - strand, within EX31_RS19945 at 618.222 kb on - strand, within EX31_RS19945 at 618.307 kb on + strand, within EX31_RS19945 at 618.307 kb on + strand, within EX31_RS19945 at 618.307 kb on + strand, within EX31_RS19945 at 618.307 kb on + strand, within EX31_RS19945 at 618.307 kb on + strand, within EX31_RS19945 at 618.307 kb on + strand, within EX31_RS19945 at 618.308 kb on - strand, within EX31_RS19945 at 618.308 kb on - strand, within EX31_RS19945 at 618.308 kb on - strand, within EX31_RS19945 at 618.308 kb on - strand, within EX31_RS19945 at 618.308 kb on - strand, within EX31_RS19945 at 618.308 kb on - strand, within EX31_RS19945 at 618.308 kb on - strand, within EX31_RS19945 at 618.338 kb on + strand, within EX31_RS19945 at 618.338 kb on + strand, within EX31_RS19945 at 618.339 kb on - strand, within EX31_RS19945 at 618.541 kb on + strand, within EX31_RS19945 at 618.541 kb on + strand, within EX31_RS19945 at 618.541 kb on + strand, within EX31_RS19945 at 618.541 kb on + strand, within EX31_RS19945 at 618.542 kb on - strand, within EX31_RS19945 at 618.542 kb on - strand, within EX31_RS19945 at 618.542 kb on - strand, within EX31_RS19945 at 618.660 kb on - strand at 618.676 kb on + strand at 618.677 kb on - strand at 618.693 kb on + strand at 618.693 kb on + strand at 618.693 kb on + strand at 618.693 kb on + strand at 618.693 kb on + strand at 618.694 kb on - strand at 618.694 kb on - strand at 618.694 kb on - strand at 618.694 kb on - strand at 618.694 kb on - strand at 618.694 kb on - strand at 618.694 kb on - strand at 618.697 kb on + strand at 618.887 kb on + strand, within EX31_RS19950 at 618.914 kb on - strand, within EX31_RS19950 at 618.914 kb on - strand, within EX31_RS19950 at 618.940 kb on + strand, within EX31_RS19950 at 618.941 kb on - strand, within EX31_RS19950 at 618.941 kb on - strand, within EX31_RS19950 at 618.983 kb on + strand, within EX31_RS19950 at 618.983 kb on + strand, within EX31_RS19950 at 618.983 kb on + strand, within EX31_RS19950 at 618.983 kb on + strand, within EX31_RS19950 at 618.983 kb on + strand, within EX31_RS19950 at 618.983 kb on + strand, within EX31_RS19950 at 618.983 kb on + strand, within EX31_RS19950 at 618.983 kb on + strand, within EX31_RS19950 at 618.983 kb on + strand, within EX31_RS19950 at 618.983 kb on + strand, within EX31_RS19950 at 618.983 kb on + strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 618.984 kb on - strand, within EX31_RS19950 at 619.105 kb on + strand, within EX31_RS19950 at 619.106 kb on - strand, within EX31_RS19950 at 619.156 kb on + strand, within EX31_RS19950 at 619.157 kb on - strand, within EX31_RS19950 at 619.157 kb on - strand, within EX31_RS19950 at 619.157 kb on - strand, within EX31_RS19950 at 619.157 kb on - strand, within EX31_RS19950 at 619.157 kb on - strand, within EX31_RS19950 at 619.157 kb on - strand, within EX31_RS19950 at 619.157 kb on - strand, within EX31_RS19950 at 619.261 kb on + strand, within EX31_RS19950 at 619.261 kb on + strand, within EX31_RS19950 at 619.261 kb on + strand, within EX31_RS19950 at 619.262 kb on - strand, within EX31_RS19950 at 619.349 kb on + strand, within EX31_RS19950 at 619.349 kb on + strand, within EX31_RS19950 at 619.349 kb on + strand, within EX31_RS19950 at 619.349 kb on + strand, within EX31_RS19950 at 619.349 kb on + strand, within EX31_RS19950 at 619.350 kb on - strand, within EX31_RS19950 at 619.361 kb on + strand, within EX31_RS19950 at 619.362 kb on - strand, within EX31_RS19950 at 619.362 kb on - strand, within EX31_RS19950 at 619.362 kb on - strand, within EX31_RS19950 at 619.362 kb on - strand, within EX31_RS19950 at 619.362 kb on - strand, within EX31_RS19950 at 619.362 kb on - strand, within EX31_RS19950 at 619.362 kb on - strand, within EX31_RS19950 at 619.362 kb on - strand, within EX31_RS19950 at 619.373 kb on + strand, within EX31_RS19950 at 619.374 kb on - strand, within EX31_RS19950 at 619.374 kb on - strand, within EX31_RS19950 at 619.484 kb on + strand, within EX31_RS19950 at 619.557 kb on + strand, within EX31_RS19950 at 619.557 kb on + strand, within EX31_RS19950 at 619.557 kb on + strand, within EX31_RS19950 at 619.557 kb on + strand, within EX31_RS19950
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 617,148 + EX31_RS19935 0.78 -1.0 617,149 - EX31_RS19935 0.78 +0.2 617,159 + EX31_RS19935 0.80 +0.3 617,159 + EX31_RS19935 0.80 -0.6 617,159 + EX31_RS19935 0.80 -0.3 617,226 + +0.7 617,226 + -0.0 617,226 + +0.4 617,227 - -0.4 617,227 - -0.4 617,227 - -0.6 617,244 + +0.0 617,244 + -0.1 617,244 + -2.4 617,244 + +0.9 617,245 - +1.1 617,245 - -0.3 617,245 - +0.2 617,258 + +0.3 617,258 + +0.3 617,554 - EX31_RS19940 0.63 +0.5 617,624 - EX31_RS19940 0.77 -0.5 617,624 - EX31_RS19940 0.77 +0.1 617,624 - EX31_RS19940 0.77 +0.2 617,624 - EX31_RS19940 0.77 -0.5 617,668 + EX31_RS19940 0.86 -0.3 617,668 + EX31_RS19940 0.86 +0.0 617,668 + EX31_RS19940 0.86 -0.7 617,669 - EX31_RS19940 0.87 +0.4 617,749 + -0.1 617,749 + +0.0 617,749 + -1.4 617,750 - -1.1 617,750 - -0.0 617,750 - +1.4 617,807 - -0.8 617,838 + -0.7 617,873 - -0.1 617,876 + +0.1 617,876 + +0.5 617,876 + +0.4 617,876 + +0.2 617,876 + -0.8 617,876 + -0.9 617,876 + +0.3 617,876 + +1.2 617,876 + +0.3 617,876 + -0.1 617,876 + +0.5 617,877 - +0.0 617,877 - -1.1 617,877 - -1.0 617,877 - +0.9 617,877 - -0.6 617,877 - -0.5 617,877 - -0.3 617,877 - -0.7 617,877 - -0.3 617,878 + -1.2 617,878 + +0.7 617,878 + +1.5 617,878 + -0.2 617,878 + +0.6 617,878 + +0.8 617,878 + +0.7 617,878 + +0.6 617,879 - -0.3 617,879 - -0.6 617,879 - +0.2 617,884 + -0.3 617,898 + -0.3 617,911 + +0.6 617,911 + -0.3 617,912 - +0.1 618,074 + -0.4 618,075 - +0.1 618,075 - +0.1 618,110 + -0.1 618,111 - -0.7 618,155 + EX31_RS19945 0.17 +0.4 618,200 + EX31_RS19945 0.25 -0.4 618,203 + EX31_RS19945 0.26 +1.1 618,203 + EX31_RS19945 0.26 -0.6 618,203 + EX31_RS19945 0.26 +1.4 618,204 - EX31_RS19945 0.26 +0.5 618,204 - EX31_RS19945 0.26 +0.7 618,222 - EX31_RS19945 0.29 -0.7 618,307 + EX31_RS19945 0.45 +0.7 618,307 + EX31_RS19945 0.45 +0.3 618,307 + EX31_RS19945 0.45 +0.3 618,307 + EX31_RS19945 0.45 +0.7 618,307 + EX31_RS19945 0.45 +0.0 618,307 + EX31_RS19945 0.45 -0.7 618,308 - EX31_RS19945 0.45 -0.8 618,308 - EX31_RS19945 0.45 -1.2 618,308 - EX31_RS19945 0.45 +0.1 618,308 - EX31_RS19945 0.45 -0.8 618,308 - EX31_RS19945 0.45 -0.1 618,308 - EX31_RS19945 0.45 -0.8 618,308 - EX31_RS19945 0.45 -0.4 618,338 + EX31_RS19945 0.50 +0.0 618,338 + EX31_RS19945 0.50 +1.2 618,339 - EX31_RS19945 0.51 -0.6 618,541 + EX31_RS19945 0.88 -0.3 618,541 + EX31_RS19945 0.88 -1.0 618,541 + EX31_RS19945 0.88 +0.9 618,541 + EX31_RS19945 0.88 +0.5 618,542 - EX31_RS19945 0.88 +0.2 618,542 - EX31_RS19945 0.88 -0.4 618,542 - EX31_RS19945 0.88 +0.7 618,660 - -0.2 618,676 + +0.0 618,677 - -0.7 618,693 + +0.2 618,693 + +0.3 618,693 + +0.2 618,693 + +0.3 618,693 + -0.2 618,694 - -0.8 618,694 - -0.5 618,694 - -0.9 618,694 - +0.8 618,694 - +0.1 618,694 - +0.1 618,694 - -0.4 618,697 + +0.3 618,887 + EX31_RS19950 0.12 +0.5 618,914 - EX31_RS19950 0.13 -0.5 618,914 - EX31_RS19950 0.13 -0.0 618,940 + EX31_RS19950 0.14 +0.4 618,941 - EX31_RS19950 0.14 +1.2 618,941 - EX31_RS19950 0.14 -0.2 618,983 + EX31_RS19950 0.16 +0.3 618,983 + EX31_RS19950 0.16 -0.3 618,983 + EX31_RS19950 0.16 +0.0 618,983 + EX31_RS19950 0.16 +0.3 618,983 + EX31_RS19950 0.16 +0.4 618,983 + EX31_RS19950 0.16 +0.5 618,983 + EX31_RS19950 0.16 +0.7 618,983 + EX31_RS19950 0.16 +0.1 618,983 + EX31_RS19950 0.16 -0.4 618,983 + EX31_RS19950 0.16 -0.0 618,983 + EX31_RS19950 0.16 +1.4 618,984 - EX31_RS19950 0.16 +0.3 618,984 - EX31_RS19950 0.16 -1.8 618,984 - EX31_RS19950 0.16 -0.2 618,984 - EX31_RS19950 0.16 +0.7 618,984 - EX31_RS19950 0.16 -0.5 618,984 - EX31_RS19950 0.16 -0.4 618,984 - EX31_RS19950 0.16 +0.5 618,984 - EX31_RS19950 0.16 -1.3 618,984 - EX31_RS19950 0.16 -0.3 618,984 - EX31_RS19950 0.16 -0.3 618,984 - EX31_RS19950 0.16 +0.3 618,984 - EX31_RS19950 0.16 -0.3 619,105 + EX31_RS19950 0.22 -0.9 619,106 - EX31_RS19950 0.22 -0.2 619,156 + EX31_RS19950 0.24 +0.3 619,157 - EX31_RS19950 0.24 -0.9 619,157 - EX31_RS19950 0.24 -1.2 619,157 - EX31_RS19950 0.24 -0.2 619,157 - EX31_RS19950 0.24 +0.3 619,157 - EX31_RS19950 0.24 -0.3 619,157 - EX31_RS19950 0.24 -0.3 619,157 - EX31_RS19950 0.24 +0.4 619,261 + EX31_RS19950 0.29 -0.9 619,261 + EX31_RS19950 0.29 +0.9 619,261 + EX31_RS19950 0.29 +0.4 619,262 - EX31_RS19950 0.29 -0.6 619,349 + EX31_RS19950 0.33 +0.4 619,349 + EX31_RS19950 0.33 +0.6 619,349 + EX31_RS19950 0.33 +0.3 619,349 + EX31_RS19950 0.33 -0.7 619,349 + EX31_RS19950 0.33 +0.4 619,350 - EX31_RS19950 0.33 +0.1 619,361 + EX31_RS19950 0.34 +0.6 619,362 - EX31_RS19950 0.34 -0.1 619,362 - EX31_RS19950 0.34 -0.9 619,362 - EX31_RS19950 0.34 -0.2 619,362 - EX31_RS19950 0.34 +0.3 619,362 - EX31_RS19950 0.34 -0.3 619,362 - EX31_RS19950 0.34 -0.4 619,362 - EX31_RS19950 0.34 +0.1 619,362 - EX31_RS19950 0.34 -0.2 619,373 + EX31_RS19950 0.34 +0.2 619,374 - EX31_RS19950 0.34 -0.1 619,374 - EX31_RS19950 0.34 -0.6 619,484 + EX31_RS19950 0.39 -0.3 619,557 + EX31_RS19950 0.43 +0.1 619,557 + EX31_RS19950 0.43 -0.3 619,557 + EX31_RS19950 0.43 +0.8 619,557 + EX31_RS19950 0.43 +0.1
Or see this region's nucleotide sequence