Strain Fitness in Rahnella sp. WP5 around EX31_RS13530

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
137,562	+		EX31_RS13520	0.55	-0.7
137,562	+		EX31_RS13520	0.55	-0.3
137,611	+		EX31_RS13520	0.60	+0.2
137,629	+		EX31_RS13520	0.62	+0.3
137,629	+		EX31_RS13520	0.62	+0.9
137,629	+		EX31_RS13520	0.62	-0.7
137,629	+		EX31_RS13520	0.62	-0.2
137,629	+		EX31_RS13520	0.62	-0.1
137,629	+		EX31_RS13520	0.62	-0.0
137,629	+		EX31_RS13520	0.62	+0.2
137,629	+		EX31_RS13520	0.62	+1.1
137,629	+		EX31_RS13520	0.62	-0.0
137,629	+		EX31_RS13520	0.62	-0.2
137,630	-		EX31_RS13520	0.63	-0.2
137,630	-		EX31_RS13520	0.63	+1.4
137,630	-		EX31_RS13520	0.63	-1.2
137,630	-		EX31_RS13520	0.63	+0.1
137,630	-		EX31_RS13520	0.63	-0.4
137,630	-		EX31_RS13520	0.63	-0.1
137,630	-		EX31_RS13520	0.63	+0.2
137,635	-		EX31_RS13520	0.63	+0.2
137,641	+		EX31_RS13520	0.64	+0.2
137,641	+		EX31_RS13520	0.64	+0.4
137,644	-		EX31_RS13520	0.64	-0.5
137,800	+		EX31_RS13520	0.82	-0.1
137,800	+		EX31_RS13520	0.82	-0.0
137,801	-		EX31_RS13520	0.82	-0.4
137,801	-		EX31_RS13520	0.82	+0.1
137,811	-		EX31_RS13520	0.83	-2.0
137,827	+		EX31_RS13520	0.85	-2.1
137,827	+		EX31_RS13520	0.85	+0.0
137,834	-		EX31_RS13520	0.86	+0.5
137,868	-		EX31_RS13520	0.89	-1.3
137,916	-				+0.0
137,964	+				-0.1
137,965	-				-0.7
137,965	-				-0.2
138,049	-				-0.5
138,049	-				-0.0
138,094	-		EX31_RS13525	0.20	-0.3
138,096	+		EX31_RS13525	0.21	-2.1
138,096	+		EX31_RS13525	0.21	-1.2
138,096	+		EX31_RS13525	0.21	-1.3
138,096	+		EX31_RS13525	0.21	-0.8
138,096	+		EX31_RS13525	0.21	+0.1
138,096	+		EX31_RS13525	0.21	-0.3
138,096	+		EX31_RS13525	0.21	+0.1
138,096	+		EX31_RS13525	0.21	-0.6
138,096	+		EX31_RS13525	0.21	-0.4
138,096	+		EX31_RS13525	0.21	-3.0
138,096	+		EX31_RS13525	0.21	-0.1
138,097	-		EX31_RS13525	0.21	-0.0
138,097	-		EX31_RS13525	0.21	-0.9
138,097	-		EX31_RS13525	0.21	+0.1
138,097	-		EX31_RS13525	0.21	-0.8
138,097	-		EX31_RS13525	0.21	-0.7
138,097	-		EX31_RS13525	0.21	-0.6
138,097	-		EX31_RS13525	0.21	-1.4
138,097	-		EX31_RS13525	0.21	-0.5
138,097	-		EX31_RS13525	0.21	-0.9
138,138	+		EX31_RS13525	0.33	-1.3
138,138	+		EX31_RS13525	0.33	-0.9
138,139	-		EX31_RS13525	0.34	-0.3
138,139	-		EX31_RS13525	0.34	-0.1
138,139	-		EX31_RS13525	0.34	+0.1
138,139	-		EX31_RS13525	0.34	+0.2
138,209	+		EX31_RS13525	0.54	-0.3
138,209	+		EX31_RS13525	0.54	+0.4
138,209	+		EX31_RS13525	0.54	-0.5
138,209	+		EX31_RS13525	0.54	-0.5
138,209	+		EX31_RS13525	0.54	-1.3
138,209	+		EX31_RS13525	0.54	-0.8
138,210	-		EX31_RS13525	0.55	+0.5
138,210	-		EX31_RS13525	0.55	-0.4
138,210	-		EX31_RS13525	0.55	-0.2
138,210	-		EX31_RS13525	0.55	-0.2
138,210	-		EX31_RS13525	0.55	-1.3
138,210	-		EX31_RS13525	0.55	+0.3
138,210	-		EX31_RS13525	0.55	-0.2
138,212	+		EX31_RS13525	0.55	-0.6
138,212	+		EX31_RS13525	0.55	+0.1
138,212	+		EX31_RS13525	0.55	-0.1
138,248	+		EX31_RS13525	0.66	+0.0
138,248	+		EX31_RS13525	0.66	-0.5
138,248	+		EX31_RS13525	0.66	+0.4
138,248	+		EX31_RS13525	0.66	+0.3
138,252	+		EX31_RS13525	0.67	+0.0
138,252	+		EX31_RS13525	0.67	-1.5
138,252	+		EX31_RS13525	0.67	-1.2
138,252	+		EX31_RS13525	0.67	+0.0
138,252	+		EX31_RS13525	0.67	-1.7
138,252	+		EX31_RS13525	0.67	-0.2
138,252	+		EX31_RS13525	0.67	-0.6
138,253	-		EX31_RS13525	0.68	-0.5
138,253	-		EX31_RS13525	0.68	+0.1
138,253	-		EX31_RS13525	0.68	-1.3
138,253	-		EX31_RS13525	0.68	-0.7
138,253	-		EX31_RS13525	0.68	+0.3
138,253	-		EX31_RS13525	0.68	+0.4
138,253	-		EX31_RS13525	0.68	+0.1
138,253	-		EX31_RS13525	0.68	-0.6
138,253	-		EX31_RS13525	0.68	+0.0
138,258	+		EX31_RS13525	0.69	-0.3
138,258	+		EX31_RS13525	0.69	+0.3
138,258	+		EX31_RS13525	0.69	-1.4
138,258	+		EX31_RS13525	0.69	-0.0
138,258	+		EX31_RS13525	0.69	+0.4
138,258	+		EX31_RS13525	0.69	-0.0
138,258	+		EX31_RS13525	0.69	+0.3
138,258	+		EX31_RS13525	0.69	+0.2
138,258	+		EX31_RS13525	0.69	-0.4
138,258	+		EX31_RS13525	0.69	-1.1
138,258	+		EX31_RS13525	0.69	+0.0
138,258	+		EX31_RS13525	0.69	+0.1
138,258	+		EX31_RS13525	0.69	-0.3
138,258	+		EX31_RS13525	0.69	-1.3
138,259	-		EX31_RS13525	0.69	+0.1
138,259	-		EX31_RS13525	0.69	-0.3
138,259	-		EX31_RS13525	0.69	+0.5
138,259	-		EX31_RS13525	0.69	-0.6
138,259	-		EX31_RS13525	0.69	-0.1
138,259	-		EX31_RS13525	0.69	+0.3
138,259	-		EX31_RS13525	0.69	+0.3
138,259	-		EX31_RS13525	0.69	+0.4
138,259	-		EX31_RS13525	0.69	+0.4
138,289	+		EX31_RS13525	0.78	-0.2
138,290	-		EX31_RS13525	0.79	-0.5
138,290	-		EX31_RS13525	0.79	+0.4
138,299	-		EX31_RS13525	0.81	-1.0
138,353	+				-0.7
138,353	+				+0.5
138,353	+				+0.1
138,357	+				-0.7
138,357	+				-0.5
138,357	+				-0.4
138,357	+				+0.0
138,357	+				+0.3
138,357	+				+0.0
138,357	+				-0.2
138,357	+				-0.3
138,357	+				+0.0
138,358	-				-0.3
138,358	-				+0.1
138,358	-				-0.6
138,358	-				+0.2
138,358	-				+0.3
138,358	-				-1.0
138,358	-				+0.6
138,358	-				-0.7
138,358	-				-0.3
138,358	-				-0.4
138,358	-				+0.1
138,358	-				-0.1
138,358	-				+0.3
138,358	-				+0.2
138,358	-				-0.4
138,358	-				+0.9
138,358	-				+0.5
138,358	-				+0.3
138,358	-				-0.4
138,405	+				-1.2
138,406	-				+0.5
138,406	-				+1.2
138,406	-				-0.3
138,406	-				-0.5
138,444	+				-0.7
138,444	+				+0.3
138,445	-				+0.5
138,448	+				-1.6
138,448	+				-1.7
138,456	-				-0.9
138,456	-				+0.3
138,459	+				+0.3
138,459	+				+0.1
138,459	+				-0.1
138,459	+				-0.2
138,459	+				-2.0
138,460	-				+0.2
138,460	-				-0.3
138,460	-				+0.7
138,460	-				-0.0
138,460	-				-0.4
138,460	-				+0.6
138,514	+				-0.4
138,514	+				-1.1
138,514	+				-0.6
138,514	+				-0.6
138,514	+				+0.3
138,514	+				-1.4
138,515	-				-0.8
138,515	-				-0.9
138,518	+				-0.0
138,559	+				+0.6
138,559	+				-0.7
138,559	+				-1.0
138,559	+				+0.3
138,559	+				+1.3
138,560	-				-0.7
138,560	-				+0.6
138,560	-				-0.1
138,560	-				-0.1
138,560	-				+0.1
138,560	-				-0.5
138,560	-				+0.5
138,580	+				-0.6
138,580	+				+0.3
138,581	-				-0.1
138,604	+				-0.7
138,604	+				-0.9
138,605	-				-0.3
138,605	-				-0.6
138,660	+		EX31_RS13530	0.14	-1.3
138,661	-		EX31_RS13530	0.14	-1.4
138,952	+		EX31_RS13530	0.39	-0.3
138,960	+		EX31_RS13530	0.39	-0.3
138,960	+		EX31_RS13530	0.39	+0.1
138,960	+		EX31_RS13530	0.39	-0.8
138,961	-		EX31_RS13530	0.40	+0.3
138,961	-		EX31_RS13530	0.40	-0.0
138,961	-		EX31_RS13530	0.40	-0.0
138,961	-		EX31_RS13530	0.40	-0.4
138,961	-		EX31_RS13530	0.40	-0.8
138,963	+		EX31_RS13530	0.40	+0.7
138,963	+		EX31_RS13530	0.40	+0.3
138,970	+		EX31_RS13530	0.40	-0.2
138,973	+		EX31_RS13530	0.41	-1.3
138,973	+		EX31_RS13530	0.41	+0.1
138,973	+		EX31_RS13530	0.41	+1.6
138,973	+		EX31_RS13530	0.41	+0.0
138,973	+		EX31_RS13530	0.41	-0.4
138,974	-		EX31_RS13530	0.41	-0.5
138,974	-		EX31_RS13530	0.41	-0.7
138,974	-		EX31_RS13530	0.41	+0.1
138,974	-		EX31_RS13530	0.41	-0.0
138,974	-		EX31_RS13530	0.41	+0.2
138,974	-		EX31_RS13530	0.41	+0.1
139,027	-		EX31_RS13530	0.45	-0.1
139,165	-		EX31_RS13530	0.57	+0.9
139,178	+		EX31_RS13530	0.58	+0.3
139,178	+		EX31_RS13530	0.58	-0.7
139,253	-		EX31_RS13530	0.64	-0.2
139,423	+		EX31_RS13530	0.78	-0.9
139,423	+		EX31_RS13530	0.78	-0.4
139,424	-		EX31_RS13530	0.78	+0.3
139,424	-		EX31_RS13530	0.78	+0.3
139,468	-		EX31_RS13530	0.82	-0.2
139,506	+		EX31_RS13530	0.85	+0.5
139,506	+		EX31_RS13530	0.85	-2.3
139,507	-		EX31_RS13530	0.85	+0.2
139,543	+		EX31_RS13530	0.88	-1.0
139,543	+		EX31_RS13530	0.88	+0.7
139,543	+		EX31_RS13530	0.88	-0.4
139,543	+		EX31_RS13530	0.88	-0.0
139,543	+		EX31_RS13530	0.88	+0.4
139,543	+		EX31_RS13530	0.88	-0.1
139,543	+		EX31_RS13530	0.88	-0.8
139,543	+		EX31_RS13530	0.88	+0.2
139,543	+		EX31_RS13530	0.88	+0.4
139,543	+		EX31_RS13530	0.88	-1.4
139,544	-		EX31_RS13530	0.88	+1.0
139,544	-		EX31_RS13530	0.88	+0.1
139,544	-		EX31_RS13530	0.88	+0.4
139,544	-		EX31_RS13530	0.88	+0.5
139,544	-		EX31_RS13530	0.88	+0.4
139,545	+		EX31_RS13530	0.88	-1.0
139,545	+		EX31_RS13530	0.88	-0.2
139,546	-		EX31_RS13530	0.88	+0.2
139,558	+		EX31_RS13530	0.89	+0.4
139,605	+				-0.4
139,660	+				-1.0
139,661	-				-0.1
139,672	+				+0.1
139,672	+				+0.6
139,672	+				-0.3
139,672	+				-0.1
139,673	-				-1.5
139,673	-				+0.4
139,673	-				-1.1
139,673	-				-0.7
139,673	-				-0.4
139,673	-				-1.5
139,673	-				-0.7
139,673	-				+0.0
139,676	+				-0.4
139,677	-				-0.3
139,677	-				+0.1
139,720	+				+1.0
139,727	+				-0.3
139,727	+				+0.4
139,727	+				-0.5
139,727	+				+0.3
139,727	+				-0.5
139,728	-				-0.9
139,728	-				+0.4
139,728	-				-0.6
139,728	-				-0.3
139,729	+				+0.2
139,729	+				-0.3
139,729	+				-1.5
139,730	-				+0.8
139,730	-				-0.5
139,730	-				-2.3
139,849	+				+0.0
139,849	+				+0.0
139,849	+				-0.1
139,849	+				+0.5
139,849	+				+0.3
139,849	+				+0.2
139,850	-				-0.0
139,850	-				-0.8
139,850	-				+0.4
139,860	+				+0.5
139,861	-				+1.0
139,861	-				+0.4
139,861	-				-1.8
139,915	-				-1.2
139,921	+				+0.6
139,922	-				-0.9
139,922	-				-0.8
139,922	-				-1.4
139,922	-				-0.0
139,922	-				+0.4
139,922	-				-1.6
139,927	+				-0.4
139,927	+				+0.4
139,930	+				-0.1
139,930	+				+0.8
139,930	+				-0.0
139,930	+				+0.5
139,930	+				+0.2
139,930	+				+1.0
139,931	-				-1.1
139,931	-				-1.9
139,931	-				+0.1
139,931	-				-1.3
139,962	+				-0.2
139,963	-				-0.4
139,974	+				-0.3
139,974	+				-0.2
139,975	-				-0.4
139,975	-				-0.5
139,975	-				-0.4
139,975	-				-0.1
139,979	+				+0.4
139,980	-				-1.0
140,003	+		EX31_RS13535	0.15	+0.4
140,099	+		EX31_RS13535	0.46	+0.1
140,099	+		EX31_RS13535	0.46	+0.3
140,099	+		EX31_RS13535	0.46	+0.3
140,099	+		EX31_RS13535	0.46	+0.2
140,099	+		EX31_RS13535	0.46	+1.0
140,099	+		EX31_RS13535	0.46	-0.3
140,100	-		EX31_RS13535	0.47	+0.2
140,100	-		EX31_RS13535	0.47	-0.3
140,100	-		EX31_RS13535	0.47	+0.0
140,179	+		EX31_RS13535	0.73	+0.4
140,179	+		EX31_RS13535	0.73	-0.2
140,179	+		EX31_RS13535	0.73	-0.6
140,180	-		EX31_RS13535	0.73	-0.2
140,180	-		EX31_RS13535	0.73	-0.6
140,180	-		EX31_RS13535	0.73	+1.4
140,180	-		EX31_RS13535	0.73	-1.0
140,190	+		EX31_RS13535	0.76	+0.1
140,191	-		EX31_RS13535	0.76	+0.0
140,200	+		EX31_RS13535	0.79	+0.9
140,200	+		EX31_RS13535	0.79	+0.9
140,265	+				+0.1
140,265	+				+0.9
140,265	+				-0.3
140,265	+				+0.5
140,265	+				-0.2
140,265	+				-0.3
140,266	-				+0.2
140,266	-				-0.1
140,266	-				+0.2
140,266	-				-0.8
140,304	+				-0.2
140,312	-				+0.3
140,454	-				-0.3
140,454	-				-0.1
140,454	-				-1.3
140,454	-				+0.1
140,477	+				-0.3
140,478	-				+0.1
140,478	-				-0.2
140,583	-				+0.5
140,584	+				-0.2
140,584	+				-0.6
140,584	+				-0.6
140,585	-				-1.1