Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08360 and EX31_RS08365 are separated by 26 nucleotides EX31_RS08365 and EX31_RS08370 are separated by 301 nucleotides
EX31_RS08360: EX31_RS08360 - Gfo/Idh/MocA family oxidoreductase, at 175,965 to 176,951
_RS08360
EX31_RS08365: EX31_RS08365 - glutamine amidotransferase, at 176,978 to 177,724
_RS08365
EX31_RS08370: EX31_RS08370 - TerC family protein, at 178,026 to 178,997
_RS08370
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 176.012 kb on + strand at 176.013 kb on - strand at 176.013 kb on - strand at 176.115 kb on + strand, within EX31_RS08360 at 176.115 kb on + strand, within EX31_RS08360 at 176.115 kb on + strand, within EX31_RS08360 at 176.116 kb on - strand, within EX31_RS08360 at 176.116 kb on - strand, within EX31_RS08360 at 176.116 kb on - strand, within EX31_RS08360 at 176.116 kb on - strand, within EX31_RS08360 at 176.116 kb on - strand, within EX31_RS08360 at 176.166 kb on + strand, within EX31_RS08360 at 176.166 kb on + strand, within EX31_RS08360 at 176.166 kb on + strand, within EX31_RS08360 at 176.166 kb on + strand, within EX31_RS08360 at 176.167 kb on - strand, within EX31_RS08360 at 176.167 kb on - strand, within EX31_RS08360 at 176.167 kb on - strand, within EX31_RS08360 at 176.167 kb on - strand, within EX31_RS08360 at 176.168 kb on + strand, within EX31_RS08360 at 176.168 kb on + strand, within EX31_RS08360 at 176.168 kb on + strand, within EX31_RS08360 at 176.222 kb on + strand, within EX31_RS08360 at 176.337 kb on + strand, within EX31_RS08360 at 176.338 kb on - strand, within EX31_RS08360 at 176.384 kb on + strand, within EX31_RS08360 at 176.385 kb on - strand, within EX31_RS08360 at 176.409 kb on + strand, within EX31_RS08360 at 176.410 kb on - strand, within EX31_RS08360 at 176.410 kb on - strand, within EX31_RS08360 at 176.419 kb on - strand, within EX31_RS08360 at 176.419 kb on - strand, within EX31_RS08360 at 176.439 kb on + strand, within EX31_RS08360 at 176.439 kb on + strand, within EX31_RS08360 at 176.462 kb on + strand, within EX31_RS08360 at 176.462 kb on + strand, within EX31_RS08360 at 176.511 kb on + strand, within EX31_RS08360 at 176.511 kb on + strand, within EX31_RS08360 at 176.511 kb on + strand, within EX31_RS08360 at 176.511 kb on + strand, within EX31_RS08360 at 176.512 kb on - strand, within EX31_RS08360 at 176.512 kb on - strand, within EX31_RS08360 at 176.512 kb on - strand, within EX31_RS08360 at 176.528 kb on + strand, within EX31_RS08360 at 176.528 kb on + strand, within EX31_RS08360 at 176.529 kb on - strand, within EX31_RS08360 at 176.529 kb on - strand, within EX31_RS08360 at 176.619 kb on + strand, within EX31_RS08360 at 176.808 kb on + strand, within EX31_RS08360 at 176.808 kb on + strand, within EX31_RS08360 at 176.808 kb on + strand, within EX31_RS08360 at 176.809 kb on - strand, within EX31_RS08360 at 176.809 kb on - strand, within EX31_RS08360 at 176.809 kb on - strand, within EX31_RS08360 at 176.949 kb on + strand at 176.949 kb on + strand at 176.950 kb on - strand at 176.950 kb on - strand at 176.952 kb on + strand at 176.952 kb on + strand at 176.953 kb on - strand at 176.953 kb on - strand at 176.953 kb on - strand at 176.953 kb on - strand at 176.953 kb on - strand at 176.953 kb on - strand at 176.953 kb on - strand at 176.956 kb on - strand at 176.956 kb on - strand at 176.956 kb on - strand at 176.956 kb on - strand at 176.956 kb on - strand at 176.956 kb on - strand at 176.972 kb on + strand at 176.973 kb on - strand at 177.037 kb on + strand at 177.089 kb on - strand, within EX31_RS08365 at 177.155 kb on + strand, within EX31_RS08365 at 177.155 kb on + strand, within EX31_RS08365 at 177.156 kb on - strand, within EX31_RS08365 at 177.156 kb on - strand, within EX31_RS08365 at 177.156 kb on - strand, within EX31_RS08365 at 177.156 kb on - strand, within EX31_RS08365 at 177.258 kb on + strand, within EX31_RS08365 at 177.258 kb on + strand, within EX31_RS08365 at 177.258 kb on + strand, within EX31_RS08365 at 177.278 kb on + strand, within EX31_RS08365 at 177.300 kb on - strand, within EX31_RS08365 at 177.323 kb on + strand, within EX31_RS08365 at 177.451 kb on + strand, within EX31_RS08365 at 177.451 kb on + strand, within EX31_RS08365 at 177.452 kb on - strand, within EX31_RS08365 at 177.516 kb on - strand, within EX31_RS08365 at 177.578 kb on + strand, within EX31_RS08365 at 177.578 kb on + strand, within EX31_RS08365 at 177.578 kb on + strand, within EX31_RS08365 at 177.578 kb on + strand, within EX31_RS08365 at 177.578 kb on + strand, within EX31_RS08365 at 177.578 kb on + strand, within EX31_RS08365 at 177.579 kb on - strand, within EX31_RS08365 at 177.579 kb on - strand, within EX31_RS08365 at 177.579 kb on - strand, within EX31_RS08365 at 177.579 kb on - strand, within EX31_RS08365 at 177.579 kb on - strand, within EX31_RS08365 at 177.598 kb on + strand, within EX31_RS08365 at 177.613 kb on + strand, within EX31_RS08365 at 177.614 kb on - strand, within EX31_RS08365 at 177.618 kb on + strand, within EX31_RS08365 at 177.619 kb on - strand, within EX31_RS08365 at 177.619 kb on - strand, within EX31_RS08365 at 177.723 kb on - strand at 177.732 kb on + strand at 177.732 kb on + strand at 177.732 kb on + strand at 177.733 kb on - strand at 177.772 kb on - strand at 177.772 kb on - strand at 177.795 kb on + strand at 177.795 kb on + strand at 177.795 kb on + strand at 177.795 kb on + strand at 177.795 kb on + strand at 177.796 kb on - strand at 177.821 kb on + strand at 177.821 kb on + strand at 177.821 kb on + strand at 177.821 kb on + strand at 177.883 kb on + strand at 177.883 kb on + strand at 177.883 kb on + strand at 177.883 kb on + strand at 177.883 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.902 kb on + strand at 177.903 kb on - strand at 177.903 kb on - strand at 177.903 kb on - strand at 177.903 kb on - strand at 177.903 kb on - strand at 177.903 kb on - strand at 177.903 kb on - strand at 177.903 kb on - strand at 177.903 kb on - strand at 177.906 kb on + strand at 177.906 kb on + strand at 177.906 kb on + strand at 177.906 kb on + strand at 177.906 kb on + strand at 177.906 kb on + strand at 177.907 kb on - strand at 177.907 kb on - strand at 177.907 kb on - strand at 177.907 kb on - strand at 177.914 kb on + strand at 177.914 kb on + strand at 177.914 kb on + strand at 177.914 kb on + strand at 177.914 kb on + strand at 177.914 kb on + strand at 177.914 kb on + strand at 177.915 kb on - strand at 178.036 kb on + strand at 178.072 kb on + strand at 178.073 kb on - strand at 178.073 kb on - strand at 178.073 kb on - strand at 178.078 kb on + strand at 178.078 kb on + strand at 178.079 kb on - strand at 178.079 kb on - strand at 178.079 kb on - strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.136 kb on + strand, within EX31_RS08370 at 178.137 kb on - strand, within EX31_RS08370 at 178.137 kb on - strand, within EX31_RS08370 at 178.137 kb on - strand, within EX31_RS08370 at 178.171 kb on + strand, within EX31_RS08370 at 178.209 kb on + strand, within EX31_RS08370 at 178.302 kb on - strand, within EX31_RS08370 at 178.332 kb on + strand, within EX31_RS08370 at 178.332 kb on + strand, within EX31_RS08370 at 178.332 kb on + strand, within EX31_RS08370 at 178.332 kb on + strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.366 kb on + strand, within EX31_RS08370 at 178.374 kb on + strand, within EX31_RS08370 at 178.374 kb on + strand, within EX31_RS08370 at 178.446 kb on - strand, within EX31_RS08370 at 178.459 kb on - strand, within EX31_RS08370 at 178.620 kb on - strand, within EX31_RS08370 at 178.631 kb on + strand, within EX31_RS08370 at 178.632 kb on - strand, within EX31_RS08370 at 178.655 kb on + strand, within EX31_RS08370 at 178.656 kb on - strand, within EX31_RS08370 at 178.656 kb on - strand, within EX31_RS08370
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 176,012 + +0.2 176,013 - +0.2 176,013 - -0.0 176,115 + EX31_RS08360 0.15 -1.1 176,115 + EX31_RS08360 0.15 -0.3 176,115 + EX31_RS08360 0.15 +0.1 176,116 - EX31_RS08360 0.15 -0.2 176,116 - EX31_RS08360 0.15 -1.0 176,116 - EX31_RS08360 0.15 -0.6 176,116 - EX31_RS08360 0.15 -1.3 176,116 - EX31_RS08360 0.15 +0.0 176,166 + EX31_RS08360 0.20 -0.4 176,166 + EX31_RS08360 0.20 -0.2 176,166 + EX31_RS08360 0.20 -0.3 176,166 + EX31_RS08360 0.20 +1.5 176,167 - EX31_RS08360 0.20 -0.1 176,167 - EX31_RS08360 0.20 +1.2 176,167 - EX31_RS08360 0.20 +0.1 176,167 - EX31_RS08360 0.20 -1.0 176,168 + EX31_RS08360 0.21 +0.2 176,168 + EX31_RS08360 0.21 -0.1 176,168 + EX31_RS08360 0.21 -0.4 176,222 + EX31_RS08360 0.26 -0.1 176,337 + EX31_RS08360 0.38 -0.1 176,338 - EX31_RS08360 0.38 +0.0 176,384 + EX31_RS08360 0.42 -0.2 176,385 - EX31_RS08360 0.43 +0.3 176,409 + EX31_RS08360 0.45 -0.2 176,410 - EX31_RS08360 0.45 +0.5 176,410 - EX31_RS08360 0.45 -0.1 176,419 - EX31_RS08360 0.46 +0.3 176,419 - EX31_RS08360 0.46 -0.2 176,439 + EX31_RS08360 0.48 +0.5 176,439 + EX31_RS08360 0.48 +0.5 176,462 + EX31_RS08360 0.50 +0.5 176,462 + EX31_RS08360 0.50 +1.5 176,511 + EX31_RS08360 0.55 -0.4 176,511 + EX31_RS08360 0.55 -0.2 176,511 + EX31_RS08360 0.55 +0.2 176,511 + EX31_RS08360 0.55 -0.8 176,512 - EX31_RS08360 0.55 -1.8 176,512 - EX31_RS08360 0.55 +0.7 176,512 - EX31_RS08360 0.55 +0.8 176,528 + EX31_RS08360 0.57 -0.2 176,528 + EX31_RS08360 0.57 -0.5 176,529 - EX31_RS08360 0.57 -0.4 176,529 - EX31_RS08360 0.57 -0.5 176,619 + EX31_RS08360 0.66 -0.1 176,808 + EX31_RS08360 0.85 +0.7 176,808 + EX31_RS08360 0.85 +0.3 176,808 + EX31_RS08360 0.85 +0.5 176,809 - EX31_RS08360 0.86 -1.2 176,809 - EX31_RS08360 0.86 -0.4 176,809 - EX31_RS08360 0.86 -0.5 176,949 + +0.1 176,949 + -0.8 176,950 - -0.6 176,950 - -0.1 176,952 + +0.1 176,952 + -0.6 176,953 - -0.0 176,953 - +0.2 176,953 - +1.2 176,953 - -0.1 176,953 - +0.1 176,953 - +0.5 176,953 - +0.6 176,956 - -0.2 176,956 - -0.4 176,956 - -0.5 176,956 - -0.4 176,956 - +0.1 176,956 - -0.4 176,972 + +0.4 176,973 - -0.6 177,037 + +0.5 177,089 - EX31_RS08365 0.15 -0.9 177,155 + EX31_RS08365 0.24 -0.4 177,155 + EX31_RS08365 0.24 +0.1 177,156 - EX31_RS08365 0.24 -0.3 177,156 - EX31_RS08365 0.24 -0.3 177,156 - EX31_RS08365 0.24 +0.2 177,156 - EX31_RS08365 0.24 +0.3 177,258 + EX31_RS08365 0.37 -0.7 177,258 + EX31_RS08365 0.37 +0.3 177,258 + EX31_RS08365 0.37 -0.9 177,278 + EX31_RS08365 0.40 -1.0 177,300 - EX31_RS08365 0.43 -1.5 177,323 + EX31_RS08365 0.46 +0.3 177,451 + EX31_RS08365 0.63 -0.9 177,451 + EX31_RS08365 0.63 -0.3 177,452 - EX31_RS08365 0.63 -0.4 177,516 - EX31_RS08365 0.72 +0.2 177,578 + EX31_RS08365 0.80 -1.0 177,578 + EX31_RS08365 0.80 +0.8 177,578 + EX31_RS08365 0.80 -0.4 177,578 + EX31_RS08365 0.80 -0.8 177,578 + EX31_RS08365 0.80 +1.0 177,578 + EX31_RS08365 0.80 -0.5 177,579 - EX31_RS08365 0.80 +1.0 177,579 - EX31_RS08365 0.80 -0.4 177,579 - EX31_RS08365 0.80 +0.2 177,579 - EX31_RS08365 0.80 +0.2 177,579 - EX31_RS08365 0.80 -0.8 177,598 + EX31_RS08365 0.83 +0.0 177,613 + EX31_RS08365 0.85 +0.2 177,614 - EX31_RS08365 0.85 +0.1 177,618 + EX31_RS08365 0.86 +0.3 177,619 - EX31_RS08365 0.86 +0.1 177,619 - EX31_RS08365 0.86 -0.7 177,723 - -0.6 177,732 + -0.5 177,732 + -0.4 177,732 + -0.6 177,733 - +0.0 177,772 - -0.3 177,772 - +0.0 177,795 + +1.9 177,795 + +1.5 177,795 + +1.3 177,795 + +2.2 177,795 + +1.8 177,796 - +0.1 177,821 + +1.2 177,821 + +1.0 177,821 + +1.7 177,821 + +1.2 177,883 + +1.8 177,883 + +2.4 177,883 + +1.6 177,883 + +2.1 177,883 + +1.7 177,902 + +1.7 177,902 + +1.5 177,902 + +2.0 177,902 + +2.3 177,902 + +2.1 177,902 + +2.3 177,902 + +3.0 177,902 + +1.5 177,902 + +1.8 177,902 + +1.9 177,902 + +1.2 177,902 + +1.2 177,902 + +1.7 177,902 + +1.8 177,902 + +2.3 177,902 + +1.9 177,902 + +1.7 177,902 + +0.8 177,902 + +1.5 177,902 + +0.9 177,903 - -0.1 177,903 - -0.1 177,903 - -0.6 177,903 - -1.1 177,903 - -0.3 177,903 - -1.9 177,903 - -0.4 177,903 - -0.2 177,903 - -0.9 177,906 + +2.0 177,906 + +1.8 177,906 + +1.9 177,906 + +1.6 177,906 + +1.9 177,906 + +2.0 177,907 - -0.3 177,907 - -0.2 177,907 - -0.8 177,907 - -1.8 177,914 + +1.4 177,914 + +2.4 177,914 + +2.2 177,914 + +1.9 177,914 + +1.6 177,914 + +1.5 177,914 + +1.5 177,915 - -0.7 178,036 + +0.1 178,072 + +0.5 178,073 - -0.1 178,073 - +0.4 178,073 - +0.2 178,078 + +1.5 178,078 + -0.4 178,079 - -0.7 178,079 - -0.2 178,079 - +0.7 178,082 + -0.9 178,082 + +0.6 178,082 + -0.4 178,082 + -0.4 178,082 + -0.2 178,082 + -0.3 178,082 + -0.1 178,082 + -1.8 178,082 + +0.6 178,082 + +0.1 178,082 + +0.3 178,082 + +0.1 178,083 - +0.2 178,083 - +0.3 178,083 - -0.9 178,083 - -0.9 178,083 - +0.5 178,083 - -1.9 178,083 - +1.9 178,083 - -0.4 178,083 - -0.2 178,083 - -0.1 178,136 + EX31_RS08370 0.11 -0.1 178,137 - EX31_RS08370 0.11 +0.2 178,137 - EX31_RS08370 0.11 +0.2 178,137 - EX31_RS08370 0.11 +0.1 178,171 + EX31_RS08370 0.15 -0.7 178,209 + EX31_RS08370 0.19 +0.6 178,302 - EX31_RS08370 0.28 -1.4 178,332 + EX31_RS08370 0.31 -0.3 178,332 + EX31_RS08370 0.31 -0.5 178,332 + EX31_RS08370 0.31 -0.3 178,332 + EX31_RS08370 0.31 -0.4 178,333 - EX31_RS08370 0.32 -0.5 178,333 - EX31_RS08370 0.32 -0.7 178,333 - EX31_RS08370 0.32 -0.4 178,333 - EX31_RS08370 0.32 -0.4 178,333 - EX31_RS08370 0.32 -0.2 178,333 - EX31_RS08370 0.32 -0.3 178,366 + EX31_RS08370 0.35 -0.2 178,374 + EX31_RS08370 0.36 +0.0 178,374 + EX31_RS08370 0.36 +0.3 178,446 - EX31_RS08370 0.43 +0.2 178,459 - EX31_RS08370 0.45 -0.9 178,620 - EX31_RS08370 0.61 -0.6 178,631 + EX31_RS08370 0.62 -0.5 178,632 - EX31_RS08370 0.62 -0.5 178,655 + EX31_RS08370 0.65 -0.9 178,656 - EX31_RS08370 0.65 -0.7 178,656 - EX31_RS08370 0.65 -1.3
Or see this region's nucleotide sequence