Strain Fitness in Rahnella sp. WP5 around EX31_RS06830

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06820 and EX31_RS06825 are separated by 13 nucleotidesEX31_RS06825 and EX31_RS06830 are separated by 38 nucleotidesEX31_RS06830 and EX31_RS06835 are separated by 21 nucleotidesEX31_RS06835 and EX31_RS06840 overlap by 8 nucleotides EX31_RS06820: EX31_RS06820 - amino acid ABC transporter permease, at 152,062 to 152,934 _RS06820 EX31_RS06825: EX31_RS06825 - amino acid ABC transporter ATP-binding protein, at 152,948 to 153,712 _RS06825 EX31_RS06830: EX31_RS06830 - ABC transporter substrate-binding protein, at 153,751 to 154,572 _RS06830 EX31_RS06835: EX31_RS06835 - polysaccharide deacetylase, at 154,594 to 155,448 _RS06835 EX31_RS06840: EX31_RS06840 - polysaccharide deacetylase, at 155,441 to 156,343 _RS06840 Position (kb) 153 154 155Strain fitness (log2 ratio) -2 -1 0 1 2at 152.776 kb on + strand, within EX31_RS06820at 152.776 kb on + strand, within EX31_RS06820at 152.777 kb on - strand, within EX31_RS06820at 152.794 kb on + strand, within EX31_RS06820at 152.794 kb on + strand, within EX31_RS06820at 152.795 kb on - strand, within EX31_RS06820at 152.896 kb on + strandat 152.896 kb on + strandat 152.959 kb on + strandat 152.980 kb on + strandat 152.984 kb on + strandat 152.984 kb on + strandat 152.985 kb on - strandat 152.985 kb on - strandat 153.231 kb on + strand, within EX31_RS06825at 153.231 kb on + strand, within EX31_RS06825at 153.232 kb on - strand, within EX31_RS06825at 153.370 kb on + strand, within EX31_RS06825at 153.573 kb on + strand, within EX31_RS06825at 153.574 kb on - strand, within EX31_RS06825at 153.630 kb on + strand, within EX31_RS06825at 153.631 kb on - strand, within EX31_RS06825at 153.652 kb on + strandat 153.849 kb on + strand, within EX31_RS06830at 154.091 kb on - strand, within EX31_RS06830at 154.093 kb on + strand, within EX31_RS06830at 154.093 kb on + strand, within EX31_RS06830at 154.093 kb on + strand, within EX31_RS06830at 154.114 kb on + strand, within EX31_RS06830at 154.115 kb on - strand, within EX31_RS06830at 154.115 kb on - strand, within EX31_RS06830at 154.115 kb on - strand, within EX31_RS06830at 154.117 kb on - strand, within EX31_RS06830at 154.227 kb on + strand, within EX31_RS06830at 154.227 kb on + strand, within EX31_RS06830at 154.228 kb on - strand, within EX31_RS06830at 154.351 kb on + strand, within EX31_RS06830at 154.378 kb on + strand, within EX31_RS06830at 154.379 kb on - strand, within EX31_RS06830at 154.622 kb on + strandat 154.622 kb on + strandat 154.723 kb on + strand, within EX31_RS06835at 154.886 kb on - strand, within EX31_RS06835at 155.066 kb on - strand, within EX31_RS06835at 155.066 kb on - strand, within EX31_RS06835at 155.076 kb on + strand, within EX31_RS06835at 155.077 kb on - strand, within EX31_RS06835at 155.077 kb on - strand, within EX31_RS06835at 155.098 kb on + strand, within EX31_RS06835at 155.175 kb on + strand, within EX31_RS06835at 155.176 kb on - strand, within EX31_RS06835at 155.182 kb on + strand, within EX31_RS06835at 155.183 kb on - strand, within EX31_RS06835at 155.183 kb on - strand, within EX31_RS06835at 155.214 kb on - strand, within EX31_RS06835at 155.230 kb on + strand, within EX31_RS06835at 155.340 kb on + strand, within EX31_RS06835at 155.341 kb on - strand, within EX31_RS06835at 155.345 kb on + strand, within EX31_RS06835at 155.346 kb on - strand, within EX31_RS06835at 155.346 kb on - strand, within EX31_RS06835at 155.488 kb on + strandat 155.489 kb on - strandat 155.489 kb on - strandat 155.506 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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152,776 + EX31_RS06820 0.82 -1.5
152,776 + EX31_RS06820 0.82 -0.7
152,777 - EX31_RS06820 0.82 -1.3
152,794 + EX31_RS06820 0.84 +0.1
152,794 + EX31_RS06820 0.84 +0.7
152,795 - EX31_RS06820 0.84 +1.0
152,896 + +0.3
152,896 + +0.1
152,959 + +0.3
152,980 + +0.7
152,984 + -0.3
152,984 + +0.4
152,985 - +0.5
152,985 - -0.9
153,231 + EX31_RS06825 0.37 +1.1
153,231 + EX31_RS06825 0.37 -0.4
153,232 - EX31_RS06825 0.37 +0.4
153,370 + EX31_RS06825 0.55 +0.5
153,573 + EX31_RS06825 0.82 +0.8
153,574 - EX31_RS06825 0.82 +0.1
153,630 + EX31_RS06825 0.89 -0.0
153,631 - EX31_RS06825 0.89 -0.8
153,652 + +1.0
153,849 + EX31_RS06830 0.12 +0.8
154,091 - EX31_RS06830 0.41 -1.1
154,093 + EX31_RS06830 0.42 +0.4
154,093 + EX31_RS06830 0.42 +0.5
154,093 + EX31_RS06830 0.42 +0.6
154,114 + EX31_RS06830 0.44 -1.4
154,115 - EX31_RS06830 0.44 -1.2
154,115 - EX31_RS06830 0.44 +0.0
154,115 - EX31_RS06830 0.44 -0.7
154,117 - EX31_RS06830 0.45 -0.8
154,227 + EX31_RS06830 0.58 -0.4
154,227 + EX31_RS06830 0.58 -0.5
154,228 - EX31_RS06830 0.58 -1.8
154,351 + EX31_RS06830 0.73 +0.1
154,378 + EX31_RS06830 0.76 -1.0
154,379 - EX31_RS06830 0.76 -0.3
154,622 + -0.1
154,622 + +0.5
154,723 + EX31_RS06835 0.15 +0.4
154,886 - EX31_RS06835 0.34 -1.7
155,066 - EX31_RS06835 0.55 +1.6
155,066 - EX31_RS06835 0.55 -0.4
155,076 + EX31_RS06835 0.56 +0.0
155,077 - EX31_RS06835 0.56 -0.4
155,077 - EX31_RS06835 0.56 -0.1
155,098 + EX31_RS06835 0.59 +2.0
155,175 + EX31_RS06835 0.68 -1.1
155,176 - EX31_RS06835 0.68 +0.6
155,182 + EX31_RS06835 0.69 +0.4
155,183 - EX31_RS06835 0.69 -0.2
155,183 - EX31_RS06835 0.69 -0.4
155,214 - EX31_RS06835 0.73 -0.6
155,230 + EX31_RS06835 0.74 +0.9
155,340 + EX31_RS06835 0.87 +0.3
155,341 - EX31_RS06835 0.87 +1.1
155,345 + EX31_RS06835 0.88 +0.1
155,346 - EX31_RS06835 0.88 +0.5
155,346 - EX31_RS06835 0.88 -1.6
155,488 + +0.1
155,489 - -1.5
155,489 - -2.5
155,506 + -0.5

Or see this region's nucleotide sequence