Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05260 and EX31_RS05265 are separated by 69 nucleotides EX31_RS05265 and EX31_RS05270 are separated by 221 nucleotides EX31_RS05270 and EX31_RS05275 are separated by 163 nucleotides
EX31_RS05260: EX31_RS05260 - 4-oxalocrotonate tautomerase, at 189,503 to 189,685
_RS05260
EX31_RS05265: EX31_RS05265 - peptide-methionine (S)-S-oxide reductase MsrA, at 189,755 to 190,297
_RS05265
EX31_RS05270: EX31_RS05270 - carbonic anhydrase, at 190,519 to 191,154
_RS05270
EX31_RS05275: EX31_RS05275 - N-acetyltransferase, at 191,318 to 192,445
_RS05275
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 189.604 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.721 kb on + strand at 189.721 kb on + strand at 189.721 kb on + strand at 189.722 kb on - strand at 189.722 kb on - strand at 189.745 kb on - strand at 189.757 kb on - strand at 189.765 kb on - strand at 189.834 kb on + strand, within EX31_RS05265 at 189.835 kb on - strand, within EX31_RS05265 at 189.864 kb on + strand, within EX31_RS05265 at 189.864 kb on + strand, within EX31_RS05265 at 189.865 kb on - strand, within EX31_RS05265 at 189.865 kb on - strand, within EX31_RS05265 at 189.865 kb on - strand, within EX31_RS05265 at 189.877 kb on - strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.957 kb on - strand, within EX31_RS05265 at 189.957 kb on - strand, within EX31_RS05265 at 190.015 kb on - strand, within EX31_RS05265 at 190.096 kb on - strand, within EX31_RS05265 at 190.096 kb on - strand, within EX31_RS05265 at 190.170 kb on + strand, within EX31_RS05265 at 190.171 kb on - strand, within EX31_RS05265 at 190.171 kb on - strand, within EX31_RS05265 at 190.171 kb on - strand, within EX31_RS05265 at 190.200 kb on + strand, within EX31_RS05265 at 190.201 kb on - strand, within EX31_RS05265 at 190.201 kb on - strand, within EX31_RS05265 at 190.252 kb on + strand at 190.252 kb on + strand at 190.252 kb on + strand at 190.253 kb on - strand at 190.279 kb on + strand at 190.284 kb on + strand at 190.284 kb on + strand at 190.285 kb on - strand at 190.297 kb on + strand at 190.297 kb on + strand at 190.298 kb on - strand at 190.298 kb on - strand at 190.329 kb on + strand at 190.330 kb on - strand at 190.341 kb on + strand at 190.352 kb on + strand at 190.353 kb on - strand at 190.353 kb on - strand at 190.353 kb on - strand at 190.358 kb on + strand at 190.358 kb on + strand at 190.359 kb on - strand at 190.359 kb on - strand at 190.400 kb on - strand at 190.407 kb on - strand at 190.407 kb on - strand at 190.409 kb on + strand at 190.409 kb on + strand at 190.409 kb on + strand at 190.410 kb on - strand at 190.410 kb on - strand at 190.410 kb on - strand at 190.424 kb on + strand at 190.424 kb on + strand at 190.425 kb on - strand at 190.435 kb on - strand at 190.438 kb on + strand at 190.438 kb on + strand at 190.439 kb on - strand at 190.447 kb on + strand at 190.448 kb on - strand at 190.448 kb on - strand at 190.502 kb on + strand at 190.502 kb on + strand at 190.503 kb on - strand at 190.578 kb on + strand at 190.578 kb on + strand at 190.579 kb on - strand at 190.626 kb on + strand, within EX31_RS05270 at 190.626 kb on + strand, within EX31_RS05270 at 190.627 kb on - strand, within EX31_RS05270 at 190.661 kb on + strand, within EX31_RS05270 at 190.713 kb on + strand, within EX31_RS05270 at 190.713 kb on + strand, within EX31_RS05270 at 190.714 kb on - strand, within EX31_RS05270 at 190.795 kb on - strand, within EX31_RS05270 at 191.043 kb on + strand, within EX31_RS05270 at 191.044 kb on - strand, within EX31_RS05270 at 191.062 kb on + strand, within EX31_RS05270 at 191.062 kb on + strand, within EX31_RS05270 at 191.062 kb on + strand, within EX31_RS05270 at 191.062 kb on + strand, within EX31_RS05270 at 191.062 kb on + strand, within EX31_RS05270 at 191.067 kb on + strand, within EX31_RS05270 at 191.141 kb on + strand at 191.152 kb on + strand at 191.152 kb on + strand at 191.163 kb on + strand at 191.163 kb on + strand at 191.164 kb on - strand at 191.167 kb on + strand at 191.188 kb on - strand at 191.219 kb on + strand at 191.226 kb on + strand at 191.226 kb on + strand at 191.226 kb on + strand at 191.227 kb on - strand at 191.227 kb on - strand at 191.229 kb on + strand at 191.229 kb on + strand at 191.229 kb on + strand at 191.229 kb on + strand at 191.229 kb on + strand at 191.229 kb on + strand at 191.229 kb on + strand at 191.230 kb on - strand at 191.230 kb on - strand at 191.230 kb on - strand at 191.230 kb on - strand at 191.231 kb on + strand at 191.231 kb on + strand at 191.231 kb on + strand at 191.232 kb on - strand at 191.232 kb on - strand at 191.232 kb on - strand at 191.237 kb on + strand at 191.238 kb on - strand at 191.280 kb on + strand at 191.296 kb on + strand at 191.335 kb on - strand at 191.405 kb on + strand at 191.405 kb on + strand at 191.405 kb on + strand at 191.405 kb on + strand at 191.406 kb on - strand at 191.538 kb on - strand, within EX31_RS05275 at 191.546 kb on + strand, within EX31_RS05275 at 191.546 kb on + strand, within EX31_RS05275 at 191.546 kb on + strand, within EX31_RS05275 at 191.546 kb on + strand, within EX31_RS05275 at 191.546 kb on + strand, within EX31_RS05275 at 191.546 kb on + strand, within EX31_RS05275 at 191.546 kb on + strand, within EX31_RS05275 at 191.547 kb on - strand, within EX31_RS05275 at 191.547 kb on - strand, within EX31_RS05275 at 191.547 kb on - strand, within EX31_RS05275 at 191.547 kb on - strand, within EX31_RS05275 at 191.547 kb on - strand, within EX31_RS05275 at 191.590 kb on + strand, within EX31_RS05275 at 191.591 kb on - strand, within EX31_RS05275 at 191.591 kb on - strand, within EX31_RS05275 at 191.591 kb on - strand, within EX31_RS05275 at 191.597 kb on + strand, within EX31_RS05275 at 191.597 kb on + strand, within EX31_RS05275 at 191.597 kb on + strand, within EX31_RS05275 at 191.598 kb on - strand, within EX31_RS05275 at 191.598 kb on - strand, within EX31_RS05275 at 191.811 kb on - strand, within EX31_RS05275 at 191.850 kb on - strand, within EX31_RS05275 at 191.850 kb on - strand, within EX31_RS05275 at 191.850 kb on - strand, within EX31_RS05275 at 191.979 kb on - strand, within EX31_RS05275 at 191.995 kb on + strand, within EX31_RS05275 at 191.995 kb on + strand, within EX31_RS05275 at 191.995 kb on + strand, within EX31_RS05275 at 191.995 kb on + strand, within EX31_RS05275 at 191.995 kb on + strand, within EX31_RS05275 at 191.996 kb on - strand, within EX31_RS05275 at 191.996 kb on - strand, within EX31_RS05275 at 191.999 kb on + strand, within EX31_RS05275 at 192.000 kb on - strand, within EX31_RS05275 at 192.000 kb on - strand, within EX31_RS05275 at 192.000 kb on - strand, within EX31_RS05275 at 192.000 kb on - strand, within EX31_RS05275 at 192.142 kb on + strand, within EX31_RS05275 at 192.142 kb on + strand, within EX31_RS05275 at 192.149 kb on + strand, within EX31_RS05275 at 192.150 kb on - strand, within EX31_RS05275 at 192.150 kb on - strand, within EX31_RS05275
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 189,604 + EX31_RS05260 0.55 -0.0 189,624 + EX31_RS05260 0.66 -0.4 189,624 + EX31_RS05260 0.66 +0.3 189,624 + EX31_RS05260 0.66 -0.1 189,624 + EX31_RS05260 0.66 -0.5 189,624 + EX31_RS05260 0.66 +0.4 189,624 + EX31_RS05260 0.66 -0.4 189,624 + EX31_RS05260 0.66 +0.2 189,624 + EX31_RS05260 0.66 +0.4 189,624 + EX31_RS05260 0.66 +0.5 189,625 - EX31_RS05260 0.67 +0.1 189,625 - EX31_RS05260 0.67 -0.8 189,625 - EX31_RS05260 0.67 -0.3 189,625 - EX31_RS05260 0.67 +0.6 189,625 - EX31_RS05260 0.67 -0.4 189,625 - EX31_RS05260 0.67 -0.0 189,625 - EX31_RS05260 0.67 -0.1 189,625 - EX31_RS05260 0.67 -0.1 189,721 + -0.0 189,721 + -0.1 189,721 + +0.2 189,722 - -0.4 189,722 - -0.3 189,745 - +0.3 189,757 - -0.4 189,765 - -0.4 189,834 + EX31_RS05265 0.15 -0.4 189,835 - EX31_RS05265 0.15 +0.2 189,864 + EX31_RS05265 0.20 -1.6 189,864 + EX31_RS05265 0.20 +0.3 189,865 - EX31_RS05265 0.20 +0.5 189,865 - EX31_RS05265 0.20 +0.3 189,865 - EX31_RS05265 0.20 +0.8 189,877 - EX31_RS05265 0.22 -0.4 189,891 + EX31_RS05265 0.25 -0.2 189,891 + EX31_RS05265 0.25 -0.0 189,891 + EX31_RS05265 0.25 -0.7 189,891 + EX31_RS05265 0.25 -0.8 189,891 + EX31_RS05265 0.25 -0.5 189,891 + EX31_RS05265 0.25 -0.4 189,891 + EX31_RS05265 0.25 +0.4 189,891 + EX31_RS05265 0.25 -0.4 189,891 + EX31_RS05265 0.25 -0.9 189,891 + EX31_RS05265 0.25 -0.3 189,891 + EX31_RS05265 0.25 -0.6 189,891 + EX31_RS05265 0.25 +0.1 189,891 + EX31_RS05265 0.25 +0.2 189,892 - EX31_RS05265 0.25 +0.7 189,892 - EX31_RS05265 0.25 +0.3 189,892 - EX31_RS05265 0.25 +0.3 189,892 - EX31_RS05265 0.25 +0.6 189,892 - EX31_RS05265 0.25 -0.0 189,892 - EX31_RS05265 0.25 +0.8 189,892 - EX31_RS05265 0.25 -0.6 189,892 - EX31_RS05265 0.25 +0.6 189,892 - EX31_RS05265 0.25 +0.8 189,892 - EX31_RS05265 0.25 +0.1 189,892 - EX31_RS05265 0.25 +0.7 189,892 - EX31_RS05265 0.25 +0.4 189,892 - EX31_RS05265 0.25 -0.1 189,892 - EX31_RS05265 0.25 +1.1 189,892 - EX31_RS05265 0.25 +0.4 189,892 - EX31_RS05265 0.25 -0.7 189,892 - EX31_RS05265 0.25 +0.2 189,957 - EX31_RS05265 0.37 -0.5 189,957 - EX31_RS05265 0.37 +0.1 190,015 - EX31_RS05265 0.48 +0.4 190,096 - EX31_RS05265 0.63 -0.2 190,096 - EX31_RS05265 0.63 +0.6 190,170 + EX31_RS05265 0.76 -0.6 190,171 - EX31_RS05265 0.77 -0.3 190,171 - EX31_RS05265 0.77 -0.1 190,171 - EX31_RS05265 0.77 -1.1 190,200 + EX31_RS05265 0.82 -0.2 190,201 - EX31_RS05265 0.82 -0.1 190,201 - EX31_RS05265 0.82 -1.8 190,252 + -0.1 190,252 + +0.1 190,252 + -0.7 190,253 - -0.1 190,279 + -0.8 190,284 + +0.2 190,284 + -0.7 190,285 - +0.0 190,297 + -0.1 190,297 + -0.6 190,298 - +0.6 190,298 - -0.2 190,329 + -0.1 190,330 - -2.8 190,341 + -0.8 190,352 + -0.1 190,353 - -0.8 190,353 - -1.7 190,353 - -0.7 190,358 + -0.5 190,358 + -0.5 190,359 - -0.8 190,359 - +0.9 190,400 - -0.5 190,407 - -0.6 190,407 - -0.3 190,409 + -0.5 190,409 + -0.4 190,409 + +0.1 190,410 - -0.1 190,410 - +0.3 190,410 - +0.2 190,424 + -0.2 190,424 + -0.1 190,425 - -0.3 190,435 - -1.4 190,438 + -1.1 190,438 + -0.7 190,439 - -0.6 190,447 + -0.4 190,448 - -0.6 190,448 - -0.5 190,502 + +0.5 190,502 + +0.5 190,503 - +0.1 190,578 + -0.5 190,578 + +0.4 190,579 - +0.3 190,626 + EX31_RS05270 0.17 +1.1 190,626 + EX31_RS05270 0.17 +0.9 190,627 - EX31_RS05270 0.17 -0.6 190,661 + EX31_RS05270 0.22 +0.5 190,713 + EX31_RS05270 0.31 +0.6 190,713 + EX31_RS05270 0.31 -0.8 190,714 - EX31_RS05270 0.31 +0.3 190,795 - EX31_RS05270 0.43 -0.7 191,043 + EX31_RS05270 0.82 +0.1 191,044 - EX31_RS05270 0.83 -0.1 191,062 + EX31_RS05270 0.85 +0.7 191,062 + EX31_RS05270 0.85 +1.6 191,062 + EX31_RS05270 0.85 -0.4 191,062 + EX31_RS05270 0.85 +0.7 191,062 + EX31_RS05270 0.85 +1.0 191,067 + EX31_RS05270 0.86 +1.1 191,141 + +0.9 191,152 + +0.8 191,152 + +0.4 191,163 + +0.6 191,163 + +1.1 191,164 - -0.2 191,167 + +0.2 191,188 - -0.1 191,219 + -0.3 191,226 + +0.0 191,226 + +0.5 191,226 + +0.0 191,227 - -0.2 191,227 - +0.4 191,229 + +0.3 191,229 + -0.0 191,229 + +0.6 191,229 + -0.5 191,229 + +0.0 191,229 + -0.0 191,229 + -0.3 191,230 - -0.1 191,230 - +0.9 191,230 - +0.2 191,230 - -0.8 191,231 + +0.1 191,231 + -0.0 191,231 + +0.1 191,232 - -0.5 191,232 - +0.7 191,232 - +0.3 191,237 + -0.5 191,238 - +0.4 191,280 + +0.6 191,296 + -1.0 191,335 - -0.3 191,405 + +0.1 191,405 + +0.3 191,405 + -0.6 191,405 + -0.9 191,406 - +0.4 191,538 - EX31_RS05275 0.20 +0.2 191,546 + EX31_RS05275 0.20 +0.2 191,546 + EX31_RS05275 0.20 +0.2 191,546 + EX31_RS05275 0.20 +0.4 191,546 + EX31_RS05275 0.20 -0.2 191,546 + EX31_RS05275 0.20 +0.2 191,546 + EX31_RS05275 0.20 +0.3 191,546 + EX31_RS05275 0.20 +0.3 191,547 - EX31_RS05275 0.20 +0.7 191,547 - EX31_RS05275 0.20 -1.0 191,547 - EX31_RS05275 0.20 +1.6 191,547 - EX31_RS05275 0.20 +0.7 191,547 - EX31_RS05275 0.20 -0.4 191,590 + EX31_RS05275 0.24 -0.0 191,591 - EX31_RS05275 0.24 -0.1 191,591 - EX31_RS05275 0.24 -0.0 191,591 - EX31_RS05275 0.24 -1.6 191,597 + EX31_RS05275 0.25 -0.5 191,597 + EX31_RS05275 0.25 +0.4 191,597 + EX31_RS05275 0.25 +0.1 191,598 - EX31_RS05275 0.25 -1.0 191,598 - EX31_RS05275 0.25 -0.3 191,811 - EX31_RS05275 0.44 -0.2 191,850 - EX31_RS05275 0.47 +0.2 191,850 - EX31_RS05275 0.47 -0.1 191,850 - EX31_RS05275 0.47 -0.5 191,979 - EX31_RS05275 0.59 -0.6 191,995 + EX31_RS05275 0.60 -0.2 191,995 + EX31_RS05275 0.60 +0.7 191,995 + EX31_RS05275 0.60 -1.7 191,995 + EX31_RS05275 0.60 +0.1 191,995 + EX31_RS05275 0.60 -0.3 191,996 - EX31_RS05275 0.60 +0.2 191,996 - EX31_RS05275 0.60 -0.8 191,999 + EX31_RS05275 0.60 +1.3 192,000 - EX31_RS05275 0.60 -0.0 192,000 - EX31_RS05275 0.60 +0.4 192,000 - EX31_RS05275 0.60 -0.3 192,000 - EX31_RS05275 0.60 -0.3 192,142 + EX31_RS05275 0.73 -0.6 192,142 + EX31_RS05275 0.73 +0.1 192,149 + EX31_RS05275 0.74 +0.4 192,150 - EX31_RS05275 0.74 -0.3 192,150 - EX31_RS05275 0.74 +0.6
Or see this region's nucleotide sequence