Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04560 and EX31_RS04565 are separated by 24 nucleotides EX31_RS04565 and EX31_RS04570 are separated by 62 nucleotides
EX31_RS04560: EX31_RS04560 - glycerate kinase, at 22,897 to 24,042
_RS04560
EX31_RS04565: EX31_RS04565 - uracil/xanthine transporter, at 24,067 to 25,353
_RS04565
EX31_RS04570: EX31_RS04570 - allantoinase AllB, at 25,416 to 26,777
_RS04570
Position (kb) 24
25
26 Strain fitness (log2 ratio) -1
0
1 at 23.099 kb on + strand, within EX31_RS04560 at 23.099 kb on + strand, within EX31_RS04560 at 23.100 kb on - strand, within EX31_RS04560 at 23.187 kb on + strand, within EX31_RS04560 at 23.187 kb on + strand, within EX31_RS04560 at 23.188 kb on - strand, within EX31_RS04560 at 23.188 kb on - strand, within EX31_RS04560 at 23.188 kb on - strand, within EX31_RS04560 at 23.226 kb on + strand, within EX31_RS04560 at 23.226 kb on + strand, within EX31_RS04560 at 23.227 kb on - strand, within EX31_RS04560 at 23.227 kb on - strand, within EX31_RS04560 at 23.227 kb on - strand, within EX31_RS04560 at 23.227 kb on - strand, within EX31_RS04560 at 23.229 kb on + strand, within EX31_RS04560 at 23.229 kb on + strand, within EX31_RS04560 at 23.230 kb on - strand, within EX31_RS04560 at 23.230 kb on - strand, within EX31_RS04560 at 23.230 kb on - strand, within EX31_RS04560 at 23.230 kb on - strand, within EX31_RS04560 at 23.230 kb on - strand, within EX31_RS04560 at 23.230 kb on - strand, within EX31_RS04560 at 23.495 kb on - strand, within EX31_RS04560 at 23.583 kb on + strand, within EX31_RS04560 at 23.583 kb on + strand, within EX31_RS04560 at 23.584 kb on - strand, within EX31_RS04560 at 23.605 kb on + strand, within EX31_RS04560 at 23.605 kb on + strand, within EX31_RS04560 at 23.605 kb on + strand, within EX31_RS04560 at 23.606 kb on - strand, within EX31_RS04560 at 23.606 kb on - strand, within EX31_RS04560 at 23.650 kb on + strand, within EX31_RS04560 at 23.651 kb on - strand, within EX31_RS04560 at 23.651 kb on - strand, within EX31_RS04560 at 23.814 kb on - strand, within EX31_RS04560 at 24.030 kb on + strand at 24.033 kb on + strand at 24.034 kb on - strand at 24.138 kb on + strand at 24.138 kb on + strand at 24.138 kb on + strand at 24.139 kb on - strand at 24.180 kb on - strand at 24.302 kb on + strand, within EX31_RS04565 at 24.302 kb on + strand, within EX31_RS04565 at 24.303 kb on - strand, within EX31_RS04565 at 24.303 kb on - strand, within EX31_RS04565 at 24.303 kb on - strand, within EX31_RS04565 at 24.303 kb on - strand, within EX31_RS04565 at 24.594 kb on + strand, within EX31_RS04565 at 24.594 kb on + strand, within EX31_RS04565 at 24.595 kb on - strand, within EX31_RS04565 at 24.603 kb on + strand, within EX31_RS04565 at 24.604 kb on - strand, within EX31_RS04565 at 24.639 kb on + strand, within EX31_RS04565 at 24.640 kb on - strand, within EX31_RS04565 at 24.640 kb on - strand, within EX31_RS04565 at 24.640 kb on - strand, within EX31_RS04565 at 24.640 kb on - strand, within EX31_RS04565 at 24.650 kb on - strand, within EX31_RS04565 at 24.731 kb on + strand, within EX31_RS04565 at 24.753 kb on + strand, within EX31_RS04565 at 24.754 kb on - strand, within EX31_RS04565 at 24.754 kb on - strand, within EX31_RS04565 at 24.754 kb on - strand, within EX31_RS04565 at 24.754 kb on - strand, within EX31_RS04565 at 24.770 kb on + strand, within EX31_RS04565 at 24.770 kb on + strand, within EX31_RS04565 at 24.771 kb on - strand, within EX31_RS04565 at 24.774 kb on + strand, within EX31_RS04565 at 24.775 kb on - strand, within EX31_RS04565 at 24.775 kb on - strand, within EX31_RS04565 at 24.804 kb on + strand, within EX31_RS04565 at 24.805 kb on - strand, within EX31_RS04565 at 24.805 kb on - strand, within EX31_RS04565 at 24.805 kb on - strand, within EX31_RS04565 at 24.906 kb on + strand, within EX31_RS04565 at 24.906 kb on + strand, within EX31_RS04565 at 24.906 kb on + strand, within EX31_RS04565 at 24.907 kb on - strand, within EX31_RS04565 at 24.907 kb on - strand, within EX31_RS04565 at 24.909 kb on + strand, within EX31_RS04565 at 24.910 kb on - strand, within EX31_RS04565 at 24.910 kb on - strand, within EX31_RS04565 at 24.938 kb on - strand, within EX31_RS04565 at 24.945 kb on + strand, within EX31_RS04565 at 24.946 kb on - strand, within EX31_RS04565 at 24.946 kb on - strand, within EX31_RS04565 at 25.206 kb on + strand, within EX31_RS04565 at 25.206 kb on + strand, within EX31_RS04565 at 25.215 kb on - strand, within EX31_RS04565 at 25.264 kb on + strand at 25.264 kb on + strand at 25.278 kb on + strand at 25.346 kb on - strand at 25.393 kb on + strand at 25.394 kb on - strand at 25.417 kb on + strand at 25.417 kb on + strand at 25.417 kb on + strand at 25.417 kb on + strand at 25.418 kb on - strand at 25.435 kb on - strand at 25.442 kb on + strand at 25.454 kb on + strand at 25.454 kb on + strand at 25.454 kb on + strand at 25.454 kb on + strand at 25.455 kb on - strand at 25.455 kb on - strand at 25.480 kb on + strand at 25.480 kb on + strand at 25.480 kb on + strand at 25.480 kb on + strand at 25.480 kb on + strand at 25.480 kb on + strand at 25.480 kb on + strand at 25.480 kb on + strand at 25.480 kb on + strand at 25.480 kb on + strand at 25.481 kb on - strand at 25.481 kb on - strand at 25.481 kb on - strand at 25.481 kb on - strand at 25.481 kb on - strand at 25.481 kb on - strand at 25.481 kb on - strand at 25.481 kb on - strand at 25.502 kb on + strand at 25.502 kb on + strand at 25.502 kb on + strand at 25.503 kb on - strand at 25.503 kb on - strand at 25.540 kb on + strand at 25.540 kb on + strand at 25.540 kb on + strand at 25.540 kb on + strand at 25.540 kb on + strand at 25.540 kb on + strand at 25.540 kb on + strand at 25.541 kb on - strand at 25.541 kb on - strand at 25.541 kb on - strand at 25.541 kb on - strand at 25.541 kb on - strand at 25.553 kb on + strand, within EX31_RS04570 at 25.588 kb on + strand, within EX31_RS04570 at 25.588 kb on + strand, within EX31_RS04570 at 25.588 kb on + strand, within EX31_RS04570 at 25.588 kb on + strand, within EX31_RS04570 at 25.588 kb on + strand, within EX31_RS04570 at 25.588 kb on + strand, within EX31_RS04570 at 25.589 kb on - strand, within EX31_RS04570 at 25.589 kb on - strand, within EX31_RS04570 at 25.589 kb on - strand, within EX31_RS04570 at 25.589 kb on - strand, within EX31_RS04570 at 25.589 kb on - strand, within EX31_RS04570 at 25.589 kb on - strand, within EX31_RS04570 at 25.589 kb on - strand, within EX31_RS04570 at 25.589 kb on - strand, within EX31_RS04570 at 25.640 kb on + strand, within EX31_RS04570 at 25.641 kb on - strand, within EX31_RS04570 at 25.649 kb on + strand, within EX31_RS04570 at 25.649 kb on + strand, within EX31_RS04570 at 25.649 kb on + strand, within EX31_RS04570 at 25.649 kb on + strand, within EX31_RS04570 at 25.650 kb on - strand, within EX31_RS04570 at 25.650 kb on - strand, within EX31_RS04570 at 25.650 kb on - strand, within EX31_RS04570 at 25.650 kb on - strand, within EX31_RS04570 at 25.715 kb on + strand, within EX31_RS04570 at 25.715 kb on + strand, within EX31_RS04570 at 25.715 kb on + strand, within EX31_RS04570 at 25.716 kb on - strand, within EX31_RS04570 at 25.907 kb on + strand, within EX31_RS04570 at 25.908 kb on - strand, within EX31_RS04570 at 25.962 kb on + strand, within EX31_RS04570 at 25.963 kb on - strand, within EX31_RS04570 at 25.969 kb on + strand, within EX31_RS04570 at 25.969 kb on + strand, within EX31_RS04570 at 25.970 kb on - strand, within EX31_RS04570 at 25.970 kb on - strand, within EX31_RS04570 at 25.970 kb on - strand, within EX31_RS04570 at 25.991 kb on + strand, within EX31_RS04570 at 25.992 kb on - strand, within EX31_RS04570 at 25.992 kb on - strand, within EX31_RS04570 at 26.052 kb on - strand, within EX31_RS04570 at 26.092 kb on + strand, within EX31_RS04570 at 26.092 kb on + strand, within EX31_RS04570 at 26.092 kb on + strand, within EX31_RS04570 at 26.093 kb on - strand, within EX31_RS04570 at 26.093 kb on - strand, within EX31_RS04570 at 26.093 kb on - strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.146 kb on + strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.147 kb on - strand, within EX31_RS04570 at 26.232 kb on + strand, within EX31_RS04570 at 26.345 kb on - strand, within EX31_RS04570
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 23,099 + EX31_RS04560 0.18 -0.8 23,099 + EX31_RS04560 0.18 -0.5 23,100 - EX31_RS04560 0.18 +0.1 23,187 + EX31_RS04560 0.25 +0.2 23,187 + EX31_RS04560 0.25 -0.2 23,188 - EX31_RS04560 0.25 +0.0 23,188 - EX31_RS04560 0.25 +0.2 23,188 - EX31_RS04560 0.25 -0.4 23,226 + EX31_RS04560 0.29 +0.6 23,226 + EX31_RS04560 0.29 -0.0 23,227 - EX31_RS04560 0.29 +0.2 23,227 - EX31_RS04560 0.29 -0.3 23,227 - EX31_RS04560 0.29 -0.2 23,227 - EX31_RS04560 0.29 +0.5 23,229 + EX31_RS04560 0.29 +0.4 23,229 + EX31_RS04560 0.29 +0.1 23,230 - EX31_RS04560 0.29 +0.1 23,230 - EX31_RS04560 0.29 +0.1 23,230 - EX31_RS04560 0.29 -0.4 23,230 - EX31_RS04560 0.29 -0.5 23,230 - EX31_RS04560 0.29 +0.4 23,230 - EX31_RS04560 0.29 -0.9 23,495 - EX31_RS04560 0.52 +0.2 23,583 + EX31_RS04560 0.60 -0.1 23,583 + EX31_RS04560 0.60 -0.7 23,584 - EX31_RS04560 0.60 +0.3 23,605 + EX31_RS04560 0.62 -0.1 23,605 + EX31_RS04560 0.62 +0.5 23,605 + EX31_RS04560 0.62 +0.3 23,606 - EX31_RS04560 0.62 +0.5 23,606 - EX31_RS04560 0.62 -0.4 23,650 + EX31_RS04560 0.66 -0.1 23,651 - EX31_RS04560 0.66 +0.1 23,651 - EX31_RS04560 0.66 +0.4 23,814 - EX31_RS04560 0.80 +0.1 24,030 + +0.1 24,033 + +0.1 24,034 - -0.5 24,138 + -0.1 24,138 + +0.5 24,138 + -0.0 24,139 - -0.2 24,180 - -1.0 24,302 + EX31_RS04565 0.18 -1.0 24,302 + EX31_RS04565 0.18 -0.3 24,303 - EX31_RS04565 0.18 +0.3 24,303 - EX31_RS04565 0.18 -0.0 24,303 - EX31_RS04565 0.18 -0.1 24,303 - EX31_RS04565 0.18 -0.5 24,594 + EX31_RS04565 0.41 +0.2 24,594 + EX31_RS04565 0.41 +0.2 24,595 - EX31_RS04565 0.41 +0.4 24,603 + EX31_RS04565 0.42 -0.1 24,604 - EX31_RS04565 0.42 -0.0 24,639 + EX31_RS04565 0.44 +0.6 24,640 - EX31_RS04565 0.45 +0.3 24,640 - EX31_RS04565 0.45 +0.2 24,640 - EX31_RS04565 0.45 -0.6 24,640 - EX31_RS04565 0.45 +0.3 24,650 - EX31_RS04565 0.45 +0.6 24,731 + EX31_RS04565 0.52 -0.0 24,753 + EX31_RS04565 0.53 -0.0 24,754 - EX31_RS04565 0.53 +0.5 24,754 - EX31_RS04565 0.53 +0.1 24,754 - EX31_RS04565 0.53 +1.1 24,754 - EX31_RS04565 0.53 -0.6 24,770 + EX31_RS04565 0.55 -0.2 24,770 + EX31_RS04565 0.55 -0.4 24,771 - EX31_RS04565 0.55 +0.4 24,774 + EX31_RS04565 0.55 -0.4 24,775 - EX31_RS04565 0.55 +0.1 24,775 - EX31_RS04565 0.55 +0.6 24,804 + EX31_RS04565 0.57 +0.4 24,805 - EX31_RS04565 0.57 -0.1 24,805 - EX31_RS04565 0.57 +0.2 24,805 - EX31_RS04565 0.57 +0.5 24,906 + EX31_RS04565 0.65 -0.1 24,906 + EX31_RS04565 0.65 -0.4 24,906 + EX31_RS04565 0.65 +0.4 24,907 - EX31_RS04565 0.65 +0.3 24,907 - EX31_RS04565 0.65 +0.2 24,909 + EX31_RS04565 0.65 +0.1 24,910 - EX31_RS04565 0.66 +0.3 24,910 - EX31_RS04565 0.66 -0.0 24,938 - EX31_RS04565 0.68 +0.1 24,945 + EX31_RS04565 0.68 +0.3 24,946 - EX31_RS04565 0.68 -0.2 24,946 - EX31_RS04565 0.68 -0.1 25,206 + EX31_RS04565 0.89 -0.1 25,206 + EX31_RS04565 0.89 -0.1 25,215 - EX31_RS04565 0.89 +0.2 25,264 + -0.1 25,264 + -0.0 25,278 + -0.0 25,346 - -0.2 25,393 + +0.1 25,394 - +0.2 25,417 + +0.1 25,417 + -0.2 25,417 + +0.5 25,417 + -1.7 25,418 - +0.0 25,435 - +0.2 25,442 + -1.2 25,454 + +0.1 25,454 + -0.2 25,454 + +0.2 25,454 + +0.5 25,455 - +1.2 25,455 - -1.1 25,480 + +0.3 25,480 + +0.1 25,480 + -1.1 25,480 + +0.1 25,480 + +0.3 25,480 + -0.1 25,480 + +0.1 25,480 + -0.5 25,480 + -0.8 25,480 + -0.1 25,481 - +0.1 25,481 - +0.2 25,481 - +0.5 25,481 - -0.2 25,481 - -0.5 25,481 - -0.1 25,481 - -1.0 25,481 - +0.1 25,502 + +0.1 25,502 + +0.8 25,502 + +0.1 25,503 - -0.2 25,503 - -0.3 25,540 + -0.6 25,540 + -0.2 25,540 + -0.7 25,540 + -0.0 25,540 + +0.0 25,540 + -0.6 25,540 + +0.2 25,541 - -0.5 25,541 - +0.2 25,541 - -0.4 25,541 - +0.3 25,541 - -0.3 25,553 + EX31_RS04570 0.10 -0.6 25,588 + EX31_RS04570 0.13 +0.1 25,588 + EX31_RS04570 0.13 +0.1 25,588 + EX31_RS04570 0.13 -0.4 25,588 + EX31_RS04570 0.13 +0.5 25,588 + EX31_RS04570 0.13 +0.4 25,588 + EX31_RS04570 0.13 -0.6 25,589 - EX31_RS04570 0.13 +0.2 25,589 - EX31_RS04570 0.13 +0.1 25,589 - EX31_RS04570 0.13 -0.0 25,589 - EX31_RS04570 0.13 -0.2 25,589 - EX31_RS04570 0.13 -0.1 25,589 - EX31_RS04570 0.13 +0.2 25,589 - EX31_RS04570 0.13 +0.4 25,589 - EX31_RS04570 0.13 +0.2 25,640 + EX31_RS04570 0.16 -0.2 25,641 - EX31_RS04570 0.17 -0.8 25,649 + EX31_RS04570 0.17 -0.0 25,649 + EX31_RS04570 0.17 +0.1 25,649 + EX31_RS04570 0.17 +0.0 25,649 + EX31_RS04570 0.17 -0.5 25,650 - EX31_RS04570 0.17 +0.2 25,650 - EX31_RS04570 0.17 -1.1 25,650 - EX31_RS04570 0.17 +0.2 25,650 - EX31_RS04570 0.17 -0.7 25,715 + EX31_RS04570 0.22 -0.2 25,715 + EX31_RS04570 0.22 -0.8 25,715 + EX31_RS04570 0.22 -0.6 25,716 - EX31_RS04570 0.22 -0.2 25,907 + EX31_RS04570 0.36 -0.6 25,908 - EX31_RS04570 0.36 -0.1 25,962 + EX31_RS04570 0.40 +0.1 25,963 - EX31_RS04570 0.40 +0.2 25,969 + EX31_RS04570 0.41 -0.8 25,969 + EX31_RS04570 0.41 -0.7 25,970 - EX31_RS04570 0.41 +0.9 25,970 - EX31_RS04570 0.41 -0.1 25,970 - EX31_RS04570 0.41 +0.1 25,991 + EX31_RS04570 0.42 +0.4 25,992 - EX31_RS04570 0.42 -0.3 25,992 - EX31_RS04570 0.42 -0.3 26,052 - EX31_RS04570 0.47 +0.5 26,092 + EX31_RS04570 0.50 -0.3 26,092 + EX31_RS04570 0.50 +0.6 26,092 + EX31_RS04570 0.50 +0.3 26,093 - EX31_RS04570 0.50 -0.6 26,093 - EX31_RS04570 0.50 +1.0 26,093 - EX31_RS04570 0.50 +0.8 26,146 + EX31_RS04570 0.54 -0.4 26,146 + EX31_RS04570 0.54 +0.4 26,146 + EX31_RS04570 0.54 -0.2 26,146 + EX31_RS04570 0.54 -0.9 26,146 + EX31_RS04570 0.54 +0.2 26,146 + EX31_RS04570 0.54 -1.1 26,146 + EX31_RS04570 0.54 -0.7 26,146 + EX31_RS04570 0.54 +0.3 26,146 + EX31_RS04570 0.54 +0.6 26,146 + EX31_RS04570 0.54 +0.3 26,146 + EX31_RS04570 0.54 -0.5 26,146 + EX31_RS04570 0.54 -0.2 26,146 + EX31_RS04570 0.54 +0.1 26,146 + EX31_RS04570 0.54 -0.2 26,146 + EX31_RS04570 0.54 -1.2 26,146 + EX31_RS04570 0.54 -0.8 26,146 + EX31_RS04570 0.54 -0.1 26,146 + EX31_RS04570 0.54 -0.5 26,146 + EX31_RS04570 0.54 -0.9 26,146 + EX31_RS04570 0.54 -0.1 26,146 + EX31_RS04570 0.54 -0.7 26,146 + EX31_RS04570 0.54 -0.8 26,146 + EX31_RS04570 0.54 +0.4 26,147 - EX31_RS04570 0.54 -0.1 26,147 - EX31_RS04570 0.54 -0.4 26,147 - EX31_RS04570 0.54 +0.1 26,147 - EX31_RS04570 0.54 -0.5 26,147 - EX31_RS04570 0.54 -0.5 26,147 - EX31_RS04570 0.54 -0.0 26,147 - EX31_RS04570 0.54 -0.1 26,147 - EX31_RS04570 0.54 +0.1 26,147 - EX31_RS04570 0.54 +0.2 26,147 - EX31_RS04570 0.54 +0.2 26,147 - EX31_RS04570 0.54 -0.4 26,147 - EX31_RS04570 0.54 +0.9 26,147 - EX31_RS04570 0.54 +0.0 26,147 - EX31_RS04570 0.54 +0.5 26,147 - EX31_RS04570 0.54 +0.2 26,147 - EX31_RS04570 0.54 -0.2 26,147 - EX31_RS04570 0.54 -0.5 26,147 - EX31_RS04570 0.54 +0.1 26,147 - EX31_RS04570 0.54 -0.2 26,147 - EX31_RS04570 0.54 -0.0 26,147 - EX31_RS04570 0.54 -0.2 26,147 - EX31_RS04570 0.54 -0.4 26,147 - EX31_RS04570 0.54 +0.2 26,232 + EX31_RS04570 0.60 -0.2 26,345 - EX31_RS04570 0.68 -0.4
Or see this region's nucleotide sequence