Strain Fitness in Rahnella sp. WP5 around EX31_RS04025

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04020 and EX31_RS04025 are separated by 346 nucleotidesEX31_RS04025 and EX31_RS04030 are separated by 72 nucleotides EX31_RS04020: EX31_RS04020 - DUF3300 domain-containing protein, at 324,551 to 326,086 _RS04020 EX31_RS04025: EX31_RS04025 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 326,433 to 327,692 _RS04025 EX31_RS04030: EX31_RS04030 - DNA repair protein RadA, at 327,765 to 329,147 _RS04030 Position (kb) 326 327 328Strain fitness (log2 ratio) -2 -1 0 1at 325.582 kb on + strand, within EX31_RS04020at 325.582 kb on + strand, within EX31_RS04020at 325.772 kb on + strand, within EX31_RS04020at 325.772 kb on + strand, within EX31_RS04020at 325.772 kb on + strand, within EX31_RS04020at 325.773 kb on - strand, within EX31_RS04020at 325.773 kb on - strand, within EX31_RS04020at 325.773 kb on - strand, within EX31_RS04020at 325.798 kb on - strand, within EX31_RS04020at 325.798 kb on - strand, within EX31_RS04020at 325.798 kb on - strand, within EX31_RS04020at 325.814 kb on + strand, within EX31_RS04020at 325.814 kb on + strand, within EX31_RS04020at 325.814 kb on + strand, within EX31_RS04020at 325.814 kb on + strand, within EX31_RS04020at 325.814 kb on + strand, within EX31_RS04020at 325.814 kb on + strand, within EX31_RS04020at 325.814 kb on + strand, within EX31_RS04020at 325.814 kb on + strand, within EX31_RS04020at 325.815 kb on - strand, within EX31_RS04020at 325.815 kb on - strand, within EX31_RS04020at 325.882 kb on + strand, within EX31_RS04020at 325.882 kb on + strand, within EX31_RS04020at 325.883 kb on - strand, within EX31_RS04020at 325.883 kb on - strand, within EX31_RS04020at 326.006 kb on + strandat 326.006 kb on + strandat 326.006 kb on + strandat 326.006 kb on + strandat 326.006 kb on + strandat 326.006 kb on + strandat 326.007 kb on - strandat 326.007 kb on - strandat 326.007 kb on - strandat 326.007 kb on - strandat 326.007 kb on - strandat 326.007 kb on - strandat 326.007 kb on - strandat 326.007 kb on - strandat 326.007 kb on - strandat 326.007 kb on - strandat 326.007 kb on - strandat 326.008 kb on + strandat 326.008 kb on + strandat 326.052 kb on - strandat 326.052 kb on - strandat 326.078 kb on + strandat 326.078 kb on + strandat 326.098 kb on + strandat 326.137 kb on + strandat 326.137 kb on + strandat 326.138 kb on - strandat 326.139 kb on + strandat 326.140 kb on - strandat 326.151 kb on + strandat 326.151 kb on + strandat 326.152 kb on - strandat 326.152 kb on - strandat 326.173 kb on + strandat 326.179 kb on + strandat 326.197 kb on + strandat 326.197 kb on + strandat 326.198 kb on - strandat 326.240 kb on + strandat 326.240 kb on + strandat 326.254 kb on + strandat 326.255 kb on - strandat 326.351 kb on + strandat 326.351 kb on + strandat 326.352 kb on - strandat 326.354 kb on + strandat 326.355 kb on - strandat 326.393 kb on + strandat 326.466 kb on - strandat 326.466 kb on - strandat 326.480 kb on + strandat 326.481 kb on - strandat 326.522 kb on - strandat 326.546 kb on - strandat 326.546 kb on - strandat 326.546 kb on - strandat 326.609 kb on + strand, within EX31_RS04025at 326.609 kb on + strand, within EX31_RS04025at 326.610 kb on - strand, within EX31_RS04025at 326.610 kb on - strand, within EX31_RS04025at 326.610 kb on - strand, within EX31_RS04025at 326.610 kb on - strand, within EX31_RS04025at 326.649 kb on - strand, within EX31_RS04025at 326.684 kb on - strand, within EX31_RS04025at 326.728 kb on + strand, within EX31_RS04025at 326.729 kb on - strand, within EX31_RS04025at 326.791 kb on + strand, within EX31_RS04025at 326.813 kb on - strand, within EX31_RS04025at 326.894 kb on - strand, within EX31_RS04025at 326.933 kb on + strand, within EX31_RS04025at 326.941 kb on - strand, within EX31_RS04025at 327.029 kb on + strand, within EX31_RS04025at 327.029 kb on + strand, within EX31_RS04025at 327.030 kb on - strand, within EX31_RS04025at 327.031 kb on + strand, within EX31_RS04025at 327.031 kb on + strand, within EX31_RS04025at 327.032 kb on - strand, within EX31_RS04025at 327.032 kb on - strand, within EX31_RS04025at 327.084 kb on - strand, within EX31_RS04025at 327.137 kb on - strand, within EX31_RS04025at 327.166 kb on + strand, within EX31_RS04025at 327.166 kb on + strand, within EX31_RS04025at 327.166 kb on + strand, within EX31_RS04025at 327.166 kb on + strand, within EX31_RS04025at 327.167 kb on - strand, within EX31_RS04025at 327.167 kb on - strand, within EX31_RS04025at 327.309 kb on + strand, within EX31_RS04025at 327.310 kb on - strand, within EX31_RS04025at 327.310 kb on - strand, within EX31_RS04025at 327.312 kb on + strand, within EX31_RS04025at 327.338 kb on + strand, within EX31_RS04025at 327.339 kb on - strand, within EX31_RS04025at 327.339 kb on - strand, within EX31_RS04025at 327.407 kb on + strand, within EX31_RS04025at 327.408 kb on - strand, within EX31_RS04025at 327.448 kb on + strand, within EX31_RS04025at 327.448 kb on + strand, within EX31_RS04025at 327.448 kb on + strand, within EX31_RS04025at 327.448 kb on + strand, within EX31_RS04025at 327.449 kb on - strand, within EX31_RS04025at 327.449 kb on - strand, within EX31_RS04025at 327.449 kb on - strand, within EX31_RS04025at 327.449 kb on - strand, within EX31_RS04025at 327.449 kb on - strand, within EX31_RS04025at 327.449 kb on - strand, within EX31_RS04025at 327.452 kb on + strand, within EX31_RS04025at 327.453 kb on - strand, within EX31_RS04025at 327.574 kb on - strandat 327.602 kb on - strandat 327.673 kb on - strandat 327.677 kb on - strandat 327.767 kb on - strandat 327.824 kb on + strandat 327.875 kb on + strandat 327.967 kb on - strand, within EX31_RS04030at 328.125 kb on + strand, within EX31_RS04030at 328.126 kb on - strand, within EX31_RS04030at 328.126 kb on - strand, within EX31_RS04030at 328.342 kb on - strand, within EX31_RS04030at 328.342 kb on - strand, within EX31_RS04030at 328.342 kb on - strand, within EX31_RS04030at 328.439 kb on + strand, within EX31_RS04030at 328.439 kb on + strand, within EX31_RS04030at 328.440 kb on - strand, within EX31_RS04030at 328.440 kb on - strand, within EX31_RS04030at 328.481 kb on + strand, within EX31_RS04030at 328.482 kb on - strand, within EX31_RS04030at 328.540 kb on + strand, within EX31_RS04030at 328.541 kb on - strand, within EX31_RS04030at 328.691 kb on + strand, within EX31_RS04030at 328.691 kb on + strand, within EX31_RS04030at 328.691 kb on + strand, within EX31_RS04030at 328.691 kb on + strand, within EX31_RS04030at 328.691 kb on + strand, within EX31_RS04030at 328.691 kb on + strand, within EX31_RS04030at 328.691 kb on + strand, within EX31_RS04030at 328.691 kb on + strand, within EX31_RS04030at 328.691 kb on + strand, within EX31_RS04030at 328.691 kb on + strand, within EX31_RS04030at 328.691 kb on + strand, within EX31_RS04030at 328.692 kb on - strand, within EX31_RS04030at 328.692 kb on - strand, within EX31_RS04030at 328.692 kb on - strand, within EX31_RS04030at 328.692 kb on - strand, within EX31_RS04030at 328.692 kb on - strand, within EX31_RS04030at 328.692 kb on - strand, within EX31_RS04030at 328.692 kb on - strand, within EX31_RS04030at 328.692 kb on - strand, within EX31_RS04030

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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325,582 + EX31_RS04020 0.67 -0.1
325,582 + EX31_RS04020 0.67 +0.3
325,772 + EX31_RS04020 0.79 -0.5
325,772 + EX31_RS04020 0.79 -0.4
325,772 + EX31_RS04020 0.79 -0.3
325,773 - EX31_RS04020 0.80 -0.2
325,773 - EX31_RS04020 0.80 -0.7
325,773 - EX31_RS04020 0.80 +0.3
325,798 - EX31_RS04020 0.81 -0.2
325,798 - EX31_RS04020 0.81 +0.4
325,798 - EX31_RS04020 0.81 -0.1
325,814 + EX31_RS04020 0.82 -0.4
325,814 + EX31_RS04020 0.82 +0.0
325,814 + EX31_RS04020 0.82 -0.4
325,814 + EX31_RS04020 0.82 -0.6
325,814 + EX31_RS04020 0.82 -0.3
325,814 + EX31_RS04020 0.82 -0.3
325,814 + EX31_RS04020 0.82 -0.3
325,814 + EX31_RS04020 0.82 -0.1
325,815 - EX31_RS04020 0.82 +0.0
325,815 - EX31_RS04020 0.82 +0.2
325,882 + EX31_RS04020 0.87 +0.9
325,882 + EX31_RS04020 0.87 -0.4
325,883 - EX31_RS04020 0.87 -0.3
325,883 - EX31_RS04020 0.87 +0.1
326,006 + -0.6
326,006 + +0.1
326,006 + +0.0
326,006 + -0.2
326,006 + -1.1
326,006 + -0.6
326,007 - -0.5
326,007 - -0.1
326,007 - +0.0
326,007 - -0.1
326,007 - -0.5
326,007 - +0.9
326,007 - +0.1
326,007 - +0.2
326,007 - +0.1
326,007 - -0.6
326,007 - +0.5
326,008 + +0.4
326,008 + -0.1
326,052 - -0.7
326,052 - +0.1
326,078 + -1.0
326,078 + -0.5
326,098 + -0.6
326,137 + -0.9
326,137 + -0.4
326,138 - +1.5
326,139 + -1.6
326,140 - -0.6
326,151 + -0.7
326,151 + -1.4
326,152 - +0.8
326,152 - -0.2
326,173 + +0.8
326,179 + -0.8
326,197 + -0.6
326,197 + -0.1
326,198 - +0.1
326,240 + -0.5
326,240 + -0.4
326,254 + -0.1
326,255 - +1.1
326,351 + -0.8
326,351 + -0.6
326,352 - -1.5
326,354 + +1.1
326,355 - -0.4
326,393 + -0.3
326,466 - +0.2
326,466 - +0.1
326,480 + +0.9
326,481 - -0.1
326,522 - -0.3
326,546 - -0.1
326,546 - -0.5
326,546 - +0.0
326,609 + EX31_RS04025 0.14 -0.8
326,609 + EX31_RS04025 0.14 +0.1
326,610 - EX31_RS04025 0.14 -0.4
326,610 - EX31_RS04025 0.14 -0.0
326,610 - EX31_RS04025 0.14 -0.1
326,610 - EX31_RS04025 0.14 -2.0
326,649 - EX31_RS04025 0.17 -1.4
326,684 - EX31_RS04025 0.20 -0.9
326,728 + EX31_RS04025 0.23 -1.1
326,729 - EX31_RS04025 0.23 -0.1
326,791 + EX31_RS04025 0.28 -0.8
326,813 - EX31_RS04025 0.30 +0.1
326,894 - EX31_RS04025 0.37 -0.2
326,933 + EX31_RS04025 0.40 -0.4
326,941 - EX31_RS04025 0.40 +0.4
327,029 + EX31_RS04025 0.47 -0.7
327,029 + EX31_RS04025 0.47 +0.6
327,030 - EX31_RS04025 0.47 -0.8
327,031 + EX31_RS04025 0.47 -0.1
327,031 + EX31_RS04025 0.47 -0.3
327,032 - EX31_RS04025 0.48 -0.3
327,032 - EX31_RS04025 0.48 -0.7
327,084 - EX31_RS04025 0.52 -1.6
327,137 - EX31_RS04025 0.56 +0.0
327,166 + EX31_RS04025 0.58 -0.0
327,166 + EX31_RS04025 0.58 +0.2
327,166 + EX31_RS04025 0.58 +0.5
327,166 + EX31_RS04025 0.58 -1.1
327,167 - EX31_RS04025 0.58 -0.2
327,167 - EX31_RS04025 0.58 +0.2
327,309 + EX31_RS04025 0.70 -0.5
327,310 - EX31_RS04025 0.70 -0.4
327,310 - EX31_RS04025 0.70 +0.1
327,312 + EX31_RS04025 0.70 +0.3
327,338 + EX31_RS04025 0.72 -0.5
327,339 - EX31_RS04025 0.72 -0.5
327,339 - EX31_RS04025 0.72 -0.5
327,407 + EX31_RS04025 0.77 -0.1
327,408 - EX31_RS04025 0.77 -0.6
327,448 + EX31_RS04025 0.81 +1.2
327,448 + EX31_RS04025 0.81 -0.5
327,448 + EX31_RS04025 0.81 -0.2
327,448 + EX31_RS04025 0.81 -0.7
327,449 - EX31_RS04025 0.81 -0.4
327,449 - EX31_RS04025 0.81 -0.6
327,449 - EX31_RS04025 0.81 -0.5
327,449 - EX31_RS04025 0.81 -0.0
327,449 - EX31_RS04025 0.81 +0.2
327,449 - EX31_RS04025 0.81 +0.3
327,452 + EX31_RS04025 0.81 -1.2
327,453 - EX31_RS04025 0.81 +0.2
327,574 - -0.3
327,602 - -0.7
327,673 - -0.6
327,677 - -0.2
327,767 - -1.2
327,824 + +0.1
327,875 + -0.4
327,967 - EX31_RS04030 0.15 +0.3
328,125 + EX31_RS04030 0.26 +0.4
328,126 - EX31_RS04030 0.26 +0.2
328,126 - EX31_RS04030 0.26 +0.2
328,342 - EX31_RS04030 0.42 -0.1
328,342 - EX31_RS04030 0.42 +0.1
328,342 - EX31_RS04030 0.42 -0.4
328,439 + EX31_RS04030 0.49 -0.9
328,439 + EX31_RS04030 0.49 -1.0
328,440 - EX31_RS04030 0.49 +0.3
328,440 - EX31_RS04030 0.49 -0.2
328,481 + EX31_RS04030 0.52 -0.0
328,482 - EX31_RS04030 0.52 -2.2
328,540 + EX31_RS04030 0.56 +0.0
328,541 - EX31_RS04030 0.56 +0.1
328,691 + EX31_RS04030 0.67 -0.2
328,691 + EX31_RS04030 0.67 +1.0
328,691 + EX31_RS04030 0.67 +0.3
328,691 + EX31_RS04030 0.67 -0.4
328,691 + EX31_RS04030 0.67 -1.0
328,691 + EX31_RS04030 0.67 +0.8
328,691 + EX31_RS04030 0.67 +0.2
328,691 + EX31_RS04030 0.67 +0.1
328,691 + EX31_RS04030 0.67 -0.9
328,691 + EX31_RS04030 0.67 -0.2
328,691 + EX31_RS04030 0.67 -0.5
328,692 - EX31_RS04030 0.67 +0.1
328,692 - EX31_RS04030 0.67 -1.3
328,692 - EX31_RS04030 0.67 -0.0
328,692 - EX31_RS04030 0.67 -0.3
328,692 - EX31_RS04030 0.67 +0.2
328,692 - EX31_RS04030 0.67 +0.1
328,692 - EX31_RS04030 0.67 -0.1
328,692 - EX31_RS04030 0.67 +0.5

Or see this region's nucleotide sequence