Strain Fitness in Rahnella sp. WP5 around EX31_RS25020

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23775 and EX31_RS25020 are separated by 364 nucleotidesEX31_RS25020 and EX31_RS23785 are separated by 14 nucleotides EX31_RS23775: EX31_RS23775 - ATP-dependent RNA helicase RhlE, at 519,293 to 520,705 _RS23775 EX31_RS25020: EX31_RS25020 - hypothetical protein, at 521,070 to 522,320 _RS25020 EX31_RS23785: EX31_RS23785 - DUF262 domain-containing protein, at 522,335 to 524,656 _RS23785 Position (kb) 521 522 523Strain fitness (log2 ratio) -2 -1 0 1at 520.114 kb on + strand, within EX31_RS23775at 520.144 kb on + strand, within EX31_RS23775at 520.144 kb on + strand, within EX31_RS23775at 520.228 kb on + strand, within EX31_RS23775at 520.228 kb on + strand, within EX31_RS23775at 520.228 kb on + strand, within EX31_RS23775at 520.228 kb on + strand, within EX31_RS23775at 520.250 kb on + strand, within EX31_RS23775at 520.250 kb on + strand, within EX31_RS23775at 520.250 kb on + strand, within EX31_RS23775at 520.250 kb on + strand, within EX31_RS23775at 520.251 kb on - strand, within EX31_RS23775at 520.251 kb on - strand, within EX31_RS23775at 520.419 kb on - strand, within EX31_RS23775at 520.703 kb on + strandat 520.703 kb on + strandat 520.704 kb on - strandat 520.704 kb on - strandat 520.723 kb on - strandat 520.786 kb on - strandat 520.833 kb on - strandat 520.846 kb on + strandat 520.846 kb on + strandat 520.847 kb on - strandat 520.849 kb on - strandat 520.849 kb on - strandat 520.849 kb on - strandat 520.853 kb on + strandat 520.854 kb on - strandat 520.854 kb on - strandat 520.896 kb on - strandat 520.920 kb on - strandat 521.033 kb on - strandat 521.058 kb on + strandat 521.058 kb on + strandat 521.058 kb on + strandat 521.062 kb on + strandat 521.127 kb on - strandat 521.131 kb on + strandat 521.159 kb on + strandat 521.180 kb on + strandat 521.224 kb on + strand, within EX31_RS25020at 521.224 kb on + strand, within EX31_RS25020at 521.500 kb on + strand, within EX31_RS25020at 521.502 kb on + strand, within EX31_RS25020at 521.548 kb on + strand, within EX31_RS25020at 521.644 kb on - strand, within EX31_RS25020at 521.802 kb on + strand, within EX31_RS25020at 521.993 kb on + strand, within EX31_RS25020at 522.044 kb on + strand, within EX31_RS25020at 522.178 kb on - strand, within EX31_RS25020at 522.539 kb on - strandat 522.765 kb on + strand, within EX31_RS23785at 523.041 kb on - strand, within EX31_RS23785at 523.100 kb on - strand, within EX31_RS23785at 523.221 kb on + strand, within EX31_RS23785

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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520,114 + EX31_RS23775 0.58 -1.2
520,144 + EX31_RS23775 0.60 +0.1
520,144 + EX31_RS23775 0.60 -0.8
520,228 + EX31_RS23775 0.66 -1.1
520,228 + EX31_RS23775 0.66 -0.1
520,228 + EX31_RS23775 0.66 -0.6
520,228 + EX31_RS23775 0.66 +1.5
520,250 + EX31_RS23775 0.68 +0.6
520,250 + EX31_RS23775 0.68 -1.4
520,250 + EX31_RS23775 0.68 -0.0
520,250 + EX31_RS23775 0.68 -1.7
520,251 - EX31_RS23775 0.68 +0.8
520,251 - EX31_RS23775 0.68 -0.2
520,419 - EX31_RS23775 0.80 -0.7
520,703 + +1.3
520,703 + +0.5
520,704 - -0.3
520,704 - +0.1
520,723 - -0.3
520,786 - +0.7
520,833 - +0.4
520,846 + +0.2
520,846 + -1.4
520,847 - -0.8
520,849 - -0.5
520,849 - -0.8
520,849 - +0.1
520,853 + -1.9
520,854 - +0.4
520,854 - -0.4
520,896 - +0.7
520,920 - -0.4
521,033 - +0.9
521,058 + +0.1
521,058 + +0.9
521,058 + +0.1
521,062 + +0.1
521,127 - -1.0
521,131 + +0.4
521,159 + -0.2
521,180 + -0.2
521,224 + EX31_RS25020 0.12 -1.5
521,224 + EX31_RS25020 0.12 -1.8
521,500 + EX31_RS25020 0.34 -1.3
521,502 + EX31_RS25020 0.35 -0.0
521,548 + EX31_RS25020 0.38 -1.5
521,644 - EX31_RS25020 0.46 +0.1
521,802 + EX31_RS25020 0.59 -0.9
521,993 + EX31_RS25020 0.74 -0.5
522,044 + EX31_RS25020 0.78 -0.8
522,178 - EX31_RS25020 0.89 -1.6
522,539 - -0.8
522,765 + EX31_RS23785 0.19 +1.0
523,041 - EX31_RS23785 0.30 -1.3
523,100 - EX31_RS23785 0.33 -1.7
523,221 + EX31_RS23785 0.38 -0.5

Or see this region's nucleotide sequence