Strain Fitness in Rahnella sp. WP5 around EX31_RS24470

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24465 and EX31_RS24470 are separated by 41 nucleotidesEX31_RS24470 and EX31_RS24475 are separated by 332 nucleotides EX31_RS24465: EX31_RS24465 - DNA polymerase III subunit delta', at 660,436 to 661,455 _RS24465 EX31_RS24470: EX31_RS24470 - metal-dependent hydrolase, at 661,497 to 662,297 _RS24470 EX31_RS24475: EX31_RS24475 - PTS glucose transporter subunit IIBC, at 662,630 to 664,063 _RS24475 Position (kb) 661 662 663Strain fitness (log2 ratio) -2 -1 0 1 2at 661.456 kb on + strandat 661.457 kb on - strandat 661.457 kb on - strandat 661.458 kb on + strandat 661.458 kb on + strandat 661.458 kb on + strandat 661.458 kb on + strandat 661.459 kb on - strandat 661.459 kb on - strandat 661.465 kb on + strandat 661.466 kb on - strandat 661.476 kb on + strandat 661.489 kb on + strandat 661.490 kb on - strandat 661.493 kb on + strandat 661.493 kb on + strandat 661.494 kb on - strandat 661.494 kb on - strandat 661.496 kb on + strandat 661.497 kb on - strandat 661.540 kb on - strandat 661.791 kb on + strand, within EX31_RS24470at 662.019 kb on + strand, within EX31_RS24470at 662.019 kb on + strand, within EX31_RS24470at 662.020 kb on - strand, within EX31_RS24470at 662.169 kb on + strand, within EX31_RS24470at 662.169 kb on + strand, within EX31_RS24470at 662.169 kb on + strand, within EX31_RS24470at 662.170 kb on - strand, within EX31_RS24470at 662.170 kb on - strand, within EX31_RS24470at 662.191 kb on - strand, within EX31_RS24470at 662.191 kb on - strand, within EX31_RS24470at 662.191 kb on - strand, within EX31_RS24470at 662.334 kb on + strandat 662.335 kb on - strandat 662.339 kb on - strandat 662.392 kb on + strandat 662.403 kb on + strandat 662.411 kb on + strandat 662.412 kb on - strandat 662.437 kb on - strandat 662.567 kb on + strandat 662.571 kb on + strandat 662.580 kb on - strandat 662.589 kb on + strandat 662.589 kb on + strandat 662.589 kb on + strandat 662.589 kb on + strandat 662.589 kb on + strandat 662.589 kb on + strandat 662.590 kb on - strandat 662.590 kb on - strandat 662.590 kb on - strandat 662.593 kb on + strandat 662.593 kb on + strandat 662.593 kb on + strandat 662.594 kb on - strandat 662.610 kb on - strandat 662.629 kb on + strandat 662.629 kb on + strandat 662.629 kb on + strandat 662.630 kb on - strandat 662.636 kb on - strandat 662.669 kb on - strandat 662.711 kb on - strandat 662.803 kb on + strand, within EX31_RS24475at 662.803 kb on + strand, within EX31_RS24475at 662.803 kb on + strand, within EX31_RS24475at 662.803 kb on + strand, within EX31_RS24475at 662.803 kb on + strand, within EX31_RS24475at 662.804 kb on - strand, within EX31_RS24475at 662.821 kb on + strand, within EX31_RS24475at 662.821 kb on + strand, within EX31_RS24475at 662.821 kb on + strand, within EX31_RS24475at 662.982 kb on + strand, within EX31_RS24475at 662.993 kb on - strand, within EX31_RS24475at 663.017 kb on + strand, within EX31_RS24475at 663.017 kb on + strand, within EX31_RS24475at 663.017 kb on + strand, within EX31_RS24475at 663.017 kb on + strand, within EX31_RS24475at 663.017 kb on + strand, within EX31_RS24475at 663.017 kb on + strand, within EX31_RS24475at 663.040 kb on + strand, within EX31_RS24475at 663.057 kb on - strand, within EX31_RS24475at 663.057 kb on - strand, within EX31_RS24475at 663.164 kb on - strand, within EX31_RS24475at 663.221 kb on + strand, within EX31_RS24475at 663.221 kb on + strand, within EX31_RS24475at 663.221 kb on + strand, within EX31_RS24475at 663.221 kb on + strand, within EX31_RS24475at 663.221 kb on + strand, within EX31_RS24475at 663.221 kb on + strand, within EX31_RS24475at 663.221 kb on + strand, within EX31_RS24475at 663.221 kb on + strand, within EX31_RS24475at 663.222 kb on - strand, within EX31_RS24475at 663.222 kb on - strand, within EX31_RS24475at 663.222 kb on - strand, within EX31_RS24475at 663.265 kb on + strand, within EX31_RS24475at 663.265 kb on + strand, within EX31_RS24475

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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661,456 + -0.1
661,457 - +0.8
661,457 - +0.3
661,458 + -2.2
661,458 + -0.4
661,458 + +0.7
661,458 + +1.7
661,459 - +0.3
661,459 - -0.9
661,465 + +0.2
661,466 - -0.5
661,476 + -0.3
661,489 + +0.9
661,490 - +0.7
661,493 + -0.3
661,493 + -0.3
661,494 - -1.3
661,494 - +0.4
661,496 + -0.7
661,497 - +0.5
661,540 - -1.7
661,791 + EX31_RS24470 0.37 -0.9
662,019 + EX31_RS24470 0.65 -1.2
662,019 + EX31_RS24470 0.65 +0.0
662,020 - EX31_RS24470 0.65 -0.6
662,169 + EX31_RS24470 0.84 -0.1
662,169 + EX31_RS24470 0.84 +0.2
662,169 + EX31_RS24470 0.84 +0.0
662,170 - EX31_RS24470 0.84 -0.3
662,170 - EX31_RS24470 0.84 -1.1
662,191 - EX31_RS24470 0.87 -2.2
662,191 - EX31_RS24470 0.87 -1.0
662,191 - EX31_RS24470 0.87 -0.2
662,334 + +0.6
662,335 - +1.2
662,339 - +1.6
662,392 + +0.7
662,403 + -0.2
662,411 + -1.7
662,412 - -0.3
662,437 - +0.0
662,567 + +0.1
662,571 + -0.3
662,580 - +0.3
662,589 + +0.1
662,589 + -0.3
662,589 + +0.2
662,589 + +0.7
662,589 + -0.0
662,589 + -1.2
662,590 - +2.0
662,590 - +0.0
662,590 - +1.6
662,593 + -0.6
662,593 + -1.1
662,593 + -1.0
662,594 - +0.0
662,610 - +1.1
662,629 + -0.3
662,629 + +0.2
662,629 + -1.5
662,630 - -0.3
662,636 - +0.8
662,669 - +0.7
662,711 - -0.5
662,803 + EX31_RS24475 0.12 -0.2
662,803 + EX31_RS24475 0.12 -0.1
662,803 + EX31_RS24475 0.12 -0.1
662,803 + EX31_RS24475 0.12 -0.2
662,803 + EX31_RS24475 0.12 -1.0
662,804 - EX31_RS24475 0.12 +0.2
662,821 + EX31_RS24475 0.13 -0.3
662,821 + EX31_RS24475 0.13 -2.4
662,821 + EX31_RS24475 0.13 -0.3
662,982 + EX31_RS24475 0.25 +0.2
662,993 - EX31_RS24475 0.25 +1.2
663,017 + EX31_RS24475 0.27 +0.9
663,017 + EX31_RS24475 0.27 -0.5
663,017 + EX31_RS24475 0.27 -0.5
663,017 + EX31_RS24475 0.27 +0.4
663,017 + EX31_RS24475 0.27 +0.8
663,017 + EX31_RS24475 0.27 +0.4
663,040 + EX31_RS24475 0.29 -0.2
663,057 - EX31_RS24475 0.30 +1.0
663,057 - EX31_RS24475 0.30 +0.3
663,164 - EX31_RS24475 0.37 -1.9
663,221 + EX31_RS24475 0.41 -0.3
663,221 + EX31_RS24475 0.41 -1.7
663,221 + EX31_RS24475 0.41 -0.2
663,221 + EX31_RS24475 0.41 +0.8
663,221 + EX31_RS24475 0.41 -0.4
663,221 + EX31_RS24475 0.41 -0.6
663,221 + EX31_RS24475 0.41 +0.6
663,221 + EX31_RS24475 0.41 +0.1
663,222 - EX31_RS24475 0.41 +0.4
663,222 - EX31_RS24475 0.41 +0.1
663,222 - EX31_RS24475 0.41 -0.9
663,265 + EX31_RS24475 0.44 -0.5
663,265 + EX31_RS24475 0.44 +0.2

Or see this region's nucleotide sequence