Strain Fitness in Rahnella sp. WP5 around EX31_RS23540

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23535 and EX31_RS23540 are separated by 126 nucleotidesEX31_RS23540 and EX31_RS23545 are separated by 203 nucleotides EX31_RS23535: EX31_RS23535 - CDF family zinc transporter ZitB, at 473,284 to 474,237 _RS23535 EX31_RS23540: EX31_RS23540 - hypothetical protein, at 474,364 to 474,693 _RS23540 EX31_RS23545: EX31_RS23545 - 3-deoxy-7-phosphoheptulonate synthase AroG, at 474,897 to 475,949 _RS23545 Position (kb) 474 475Strain fitness (log2 ratio) -2 -1 0 1 2at 473.385 kb on - strand, within EX31_RS23535at 473.385 kb on - strand, within EX31_RS23535at 473.396 kb on - strand, within EX31_RS23535at 473.428 kb on + strand, within EX31_RS23535at 473.587 kb on - strand, within EX31_RS23535at 473.690 kb on - strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.720 kb on + strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.721 kb on - strand, within EX31_RS23535at 473.802 kb on + strand, within EX31_RS23535at 473.802 kb on + strand, within EX31_RS23535at 473.803 kb on - strand, within EX31_RS23535at 473.850 kb on + strand, within EX31_RS23535at 474.009 kb on - strand, within EX31_RS23535at 474.009 kb on - strand, within EX31_RS23535at 474.036 kb on + strand, within EX31_RS23535at 474.036 kb on + strand, within EX31_RS23535at 474.037 kb on - strand, within EX31_RS23535at 474.042 kb on + strand, within EX31_RS23535at 474.052 kb on + strand, within EX31_RS23535at 474.174 kb on + strandat 474.175 kb on - strandat 474.220 kb on + strandat 474.221 kb on - strandat 474.221 kb on - strandat 474.237 kb on + strandat 474.237 kb on + strandat 474.237 kb on + strandat 474.237 kb on + strandat 474.238 kb on - strandat 474.238 kb on - strandat 474.238 kb on - strandat 474.241 kb on + strandat 474.241 kb on + strandat 474.241 kb on + strandat 474.241 kb on + strandat 474.241 kb on + strandat 474.241 kb on + strandat 474.242 kb on - strandat 474.242 kb on - strandat 474.242 kb on - strandat 474.242 kb on - strandat 474.242 kb on - strandat 474.242 kb on - strandat 474.242 kb on - strandat 474.242 kb on - strandat 474.244 kb on - strandat 474.277 kb on + strandat 474.283 kb on - strandat 474.288 kb on + strandat 474.288 kb on + strandat 474.312 kb on + strandat 474.365 kb on + strandat 474.365 kb on + strandat 474.365 kb on + strandat 474.366 kb on - strandat 474.471 kb on + strand, within EX31_RS23540at 474.510 kb on + strand, within EX31_RS23540at 474.510 kb on + strand, within EX31_RS23540at 474.511 kb on - strand, within EX31_RS23540at 474.517 kb on - strand, within EX31_RS23540at 474.632 kb on + strand, within EX31_RS23540at 474.632 kb on + strand, within EX31_RS23540at 474.632 kb on + strand, within EX31_RS23540at 474.632 kb on + strand, within EX31_RS23540at 474.632 kb on + strand, within EX31_RS23540at 474.749 kb on + strandat 474.757 kb on + strandat 474.757 kb on + strandat 474.757 kb on + strandat 474.758 kb on - strandat 474.761 kb on + strandat 474.761 kb on + strandat 474.770 kb on + strandat 474.770 kb on + strandat 474.770 kb on + strandat 474.770 kb on + strandat 474.770 kb on + strandat 474.770 kb on + strandat 474.771 kb on - strandat 474.771 kb on - strandat 474.800 kb on - strandat 474.806 kb on - strandat 474.833 kb on - strandat 474.839 kb on - strandat 474.839 kb on - strandat 474.839 kb on - strandat 474.873 kb on + strandat 474.896 kb on + strandat 474.896 kb on + strandat 474.897 kb on - strandat 474.897 kb on - strandat 475.028 kb on + strand, within EX31_RS23545at 475.028 kb on + strand, within EX31_RS23545at 475.028 kb on + strand, within EX31_RS23545at 475.028 kb on + strand, within EX31_RS23545at 475.110 kb on + strand, within EX31_RS23545at 475.111 kb on - strand, within EX31_RS23545at 475.176 kb on + strand, within EX31_RS23545at 475.176 kb on + strand, within EX31_RS23545at 475.220 kb on + strand, within EX31_RS23545at 475.238 kb on + strand, within EX31_RS23545at 475.295 kb on + strand, within EX31_RS23545at 475.340 kb on + strand, within EX31_RS23545at 475.340 kb on + strand, within EX31_RS23545at 475.350 kb on + strand, within EX31_RS23545at 475.351 kb on - strand, within EX31_RS23545at 475.391 kb on + strand, within EX31_RS23545at 475.408 kb on + strand, within EX31_RS23545at 475.432 kb on + strand, within EX31_RS23545at 475.475 kb on + strand, within EX31_RS23545at 475.575 kb on - strand, within EX31_RS23545at 475.586 kb on + strand, within EX31_RS23545at 475.617 kb on + strand, within EX31_RS23545at 475.617 kb on + strand, within EX31_RS23545at 475.617 kb on + strand, within EX31_RS23545at 475.618 kb on - strand, within EX31_RS23545at 475.683 kb on - strand, within EX31_RS23545at 475.683 kb on - strand, within EX31_RS23545

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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473,385 - EX31_RS23535 0.11 -0.9
473,385 - EX31_RS23535 0.11 +0.4
473,396 - EX31_RS23535 0.12 +1.1
473,428 + EX31_RS23535 0.15 -1.5
473,587 - EX31_RS23535 0.32 -0.3
473,690 - EX31_RS23535 0.43 +0.0
473,720 + EX31_RS23535 0.46 -0.3
473,720 + EX31_RS23535 0.46 -1.2
473,720 + EX31_RS23535 0.46 -0.7
473,720 + EX31_RS23535 0.46 -1.0
473,720 + EX31_RS23535 0.46 -1.7
473,720 + EX31_RS23535 0.46 +0.1
473,721 - EX31_RS23535 0.46 -0.5
473,721 - EX31_RS23535 0.46 +1.3
473,721 - EX31_RS23535 0.46 -1.5
473,721 - EX31_RS23535 0.46 +0.2
473,721 - EX31_RS23535 0.46 +0.2
473,721 - EX31_RS23535 0.46 -0.5
473,721 - EX31_RS23535 0.46 -0.0
473,721 - EX31_RS23535 0.46 -0.4
473,721 - EX31_RS23535 0.46 -0.3
473,721 - EX31_RS23535 0.46 +0.6
473,721 - EX31_RS23535 0.46 -0.1
473,721 - EX31_RS23535 0.46 +0.1
473,802 + EX31_RS23535 0.54 -1.0
473,802 + EX31_RS23535 0.54 +0.0
473,803 - EX31_RS23535 0.54 -0.2
473,850 + EX31_RS23535 0.59 +0.3
474,009 - EX31_RS23535 0.76 +0.6
474,009 - EX31_RS23535 0.76 -1.3
474,036 + EX31_RS23535 0.79 -1.0
474,036 + EX31_RS23535 0.79 +0.2
474,037 - EX31_RS23535 0.79 -0.2
474,042 + EX31_RS23535 0.79 +0.1
474,052 + EX31_RS23535 0.81 -0.4
474,174 + -0.4
474,175 - -0.8
474,220 + -0.0
474,221 - -0.7
474,221 - +0.0
474,237 + +0.6
474,237 + -2.0
474,237 + -0.3
474,237 + -2.1
474,238 - +0.4
474,238 - -0.3
474,238 - -1.9
474,241 + -0.3
474,241 + -2.4
474,241 + +0.2
474,241 + -0.4
474,241 + +0.5
474,241 + +0.1
474,242 - -0.0
474,242 - +0.2
474,242 - +0.6
474,242 - -0.3
474,242 - +0.1
474,242 - -0.2
474,242 - -1.4
474,242 - +0.0
474,244 - -0.5
474,277 + +1.4
474,283 - +0.8
474,288 + -1.3
474,288 + -0.3
474,312 + +2.6
474,365 + +0.0
474,365 + -0.7
474,365 + +0.0
474,366 - -0.3
474,471 + EX31_RS23540 0.32 -0.5
474,510 + EX31_RS23540 0.44 +0.1
474,510 + EX31_RS23540 0.44 +0.2
474,511 - EX31_RS23540 0.45 -0.2
474,517 - EX31_RS23540 0.46 -1.3
474,632 + EX31_RS23540 0.81 -0.6
474,632 + EX31_RS23540 0.81 -1.9
474,632 + EX31_RS23540 0.81 -0.6
474,632 + EX31_RS23540 0.81 -2.0
474,632 + EX31_RS23540 0.81 -0.1
474,749 + +0.4
474,757 + -0.1
474,757 + +0.2
474,757 + +0.7
474,758 - +0.1
474,761 + -1.1
474,761 + +1.3
474,770 + -0.2
474,770 + +0.5
474,770 + -0.8
474,770 + -0.7
474,770 + -1.0
474,770 + +0.4
474,771 - -1.1
474,771 - +0.1
474,800 - +0.7
474,806 - -0.2
474,833 - -0.4
474,839 - +0.5
474,839 - -0.1
474,839 - -0.0
474,873 + +0.6
474,896 + +0.1
474,896 + -1.8
474,897 - -1.4
474,897 - -0.3
475,028 + EX31_RS23545 0.12 -0.1
475,028 + EX31_RS23545 0.12 +0.3
475,028 + EX31_RS23545 0.12 -0.1
475,028 + EX31_RS23545 0.12 -0.6
475,110 + EX31_RS23545 0.20 -0.5
475,111 - EX31_RS23545 0.20 +0.4
475,176 + EX31_RS23545 0.26 +0.2
475,176 + EX31_RS23545 0.26 +0.3
475,220 + EX31_RS23545 0.31 -0.8
475,238 + EX31_RS23545 0.32 +0.1
475,295 + EX31_RS23545 0.38 +0.1
475,340 + EX31_RS23545 0.42 -1.0
475,340 + EX31_RS23545 0.42 +0.5
475,350 + EX31_RS23545 0.43 +0.2
475,351 - EX31_RS23545 0.43 -1.2
475,391 + EX31_RS23545 0.47 -0.2
475,408 + EX31_RS23545 0.49 +0.6
475,432 + EX31_RS23545 0.51 -0.5
475,475 + EX31_RS23545 0.55 -0.5
475,575 - EX31_RS23545 0.64 -0.1
475,586 + EX31_RS23545 0.65 +0.4
475,617 + EX31_RS23545 0.68 -0.3
475,617 + EX31_RS23545 0.68 +0.2
475,617 + EX31_RS23545 0.68 -0.8
475,618 - EX31_RS23545 0.68 +0.3
475,683 - EX31_RS23545 0.75 -0.5
475,683 - EX31_RS23545 0.75 -0.5

Or see this region's nucleotide sequence