Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23065 and EX31_RS23070 are separated by 199 nucleotides EX31_RS23070 and EX31_RS23075 overlap by 4 nucleotides EX31_RS23075 and EX31_RS23080 overlap by 4 nucleotides
EX31_RS23065: EX31_RS23065 - deaminated glutathione amidase, at 375,244 to 376,038
_RS23065
EX31_RS23070: EX31_RS23070 - ABC transporter substrate-binding protein, at 376,238 to 377,146
_RS23070
EX31_RS23075: EX31_RS23075 - amino acid ABC transporter permease, at 377,143 to 378,126
_RS23075
EX31_RS23080: EX31_RS23080 - amino acid ABC transporter ATP-binding protein, at 378,123 to 378,920
_RS23080
Position (kb) 376
377
378 Strain fitness (log2 ratio) -2
-1
0
1
2 at 375.257 kb on + strand at 375.257 kb on + strand at 375.257 kb on + strand at 375.258 kb on - strand at 375.258 kb on - strand at 375.258 kb on - strand at 375.258 kb on - strand at 375.291 kb on + strand at 375.291 kb on + strand at 375.520 kb on + strand, within EX31_RS23065 at 375.520 kb on + strand, within EX31_RS23065 at 375.522 kb on + strand, within EX31_RS23065 at 375.522 kb on + strand, within EX31_RS23065 at 375.523 kb on - strand, within EX31_RS23065 at 375.555 kb on + strand, within EX31_RS23065 at 375.584 kb on - strand, within EX31_RS23065 at 375.635 kb on + strand, within EX31_RS23065 at 375.636 kb on - strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.832 kb on + strand, within EX31_RS23065 at 375.833 kb on - strand, within EX31_RS23065 at 375.833 kb on - strand, within EX31_RS23065 at 375.833 kb on - strand, within EX31_RS23065 at 375.833 kb on - strand, within EX31_RS23065 at 375.833 kb on - strand, within EX31_RS23065 at 375.833 kb on - strand, within EX31_RS23065 at 375.833 kb on - strand, within EX31_RS23065 at 375.833 kb on - strand, within EX31_RS23065 at 375.833 kb on - strand, within EX31_RS23065 at 375.833 kb on - strand, within EX31_RS23065 at 375.833 kb on - strand, within EX31_RS23065 at 375.834 kb on + strand, within EX31_RS23065 at 375.834 kb on + strand, within EX31_RS23065 at 375.834 kb on + strand, within EX31_RS23065 at 375.834 kb on + strand, within EX31_RS23065 at 375.835 kb on - strand, within EX31_RS23065 at 375.835 kb on - strand, within EX31_RS23065 at 375.835 kb on - strand, within EX31_RS23065 at 375.879 kb on + strand, within EX31_RS23065 at 375.879 kb on + strand, within EX31_RS23065 at 375.879 kb on + strand, within EX31_RS23065 at 375.879 kb on + strand, within EX31_RS23065 at 375.879 kb on + strand, within EX31_RS23065 at 375.879 kb on + strand, within EX31_RS23065 at 376.085 kb on + strand at 376.123 kb on + strand at 376.137 kb on + strand at 376.171 kb on + strand at 376.171 kb on + strand at 376.172 kb on - strand at 376.180 kb on + strand at 376.180 kb on + strand at 376.180 kb on + strand at 376.180 kb on + strand at 376.181 kb on - strand at 376.197 kb on + strand at 376.219 kb on - strand at 376.269 kb on + strand at 376.284 kb on + strand at 376.302 kb on + strand at 376.303 kb on - strand at 376.371 kb on + strand, within EX31_RS23070 at 376.372 kb on - strand, within EX31_RS23070 at 376.655 kb on + strand, within EX31_RS23070 at 376.655 kb on + strand, within EX31_RS23070 at 376.655 kb on + strand, within EX31_RS23070 at 376.656 kb on - strand, within EX31_RS23070 at 376.656 kb on - strand, within EX31_RS23070 at 376.711 kb on + strand, within EX31_RS23070 at 376.712 kb on - strand, within EX31_RS23070 at 376.815 kb on + strand, within EX31_RS23070 at 376.838 kb on - strand, within EX31_RS23070 at 376.861 kb on + strand, within EX31_RS23070 at 376.904 kb on + strand, within EX31_RS23070 at 376.904 kb on + strand, within EX31_RS23070 at 376.905 kb on - strand, within EX31_RS23070 at 376.905 kb on - strand, within EX31_RS23070 at 377.060 kb on + strand at 377.060 kb on + strand at 377.098 kb on + strand at 377.098 kb on + strand at 377.098 kb on + strand at 377.098 kb on + strand at 377.098 kb on + strand at 377.098 kb on + strand at 377.119 kb on + strand at 377.141 kb on - strand at 377.141 kb on - strand at 377.141 kb on - strand at 377.151 kb on + strand at 377.160 kb on + strand at 377.160 kb on + strand at 377.160 kb on + strand at 377.188 kb on + strand at 377.189 kb on - strand at 377.191 kb on - strand at 377.191 kb on - strand at 377.208 kb on + strand at 377.209 kb on - strand at 377.239 kb on + strand at 377.239 kb on + strand at 377.240 kb on - strand at 377.240 kb on - strand at 377.391 kb on + strand, within EX31_RS23075 at 377.478 kb on - strand, within EX31_RS23075 at 377.488 kb on + strand, within EX31_RS23075 at 377.488 kb on + strand, within EX31_RS23075 at 377.488 kb on + strand, within EX31_RS23075 at 377.488 kb on + strand, within EX31_RS23075 at 377.488 kb on + strand, within EX31_RS23075 at 377.488 kb on + strand, within EX31_RS23075 at 377.488 kb on + strand, within EX31_RS23075 at 377.488 kb on + strand, within EX31_RS23075 at 377.489 kb on - strand, within EX31_RS23075 at 377.489 kb on - strand, within EX31_RS23075 at 377.489 kb on - strand, within EX31_RS23075 at 377.489 kb on - strand, within EX31_RS23075 at 377.490 kb on + strand, within EX31_RS23075 at 377.490 kb on + strand, within EX31_RS23075 at 377.528 kb on + strand, within EX31_RS23075 at 377.528 kb on + strand, within EX31_RS23075 at 377.528 kb on + strand, within EX31_RS23075 at 377.528 kb on + strand, within EX31_RS23075 at 377.529 kb on - strand, within EX31_RS23075 at 377.529 kb on - strand, within EX31_RS23075 at 377.539 kb on + strand, within EX31_RS23075 at 377.540 kb on - strand, within EX31_RS23075 at 377.540 kb on - strand, within EX31_RS23075 at 377.596 kb on + strand, within EX31_RS23075 at 377.596 kb on + strand, within EX31_RS23075 at 377.596 kb on + strand, within EX31_RS23075 at 377.596 kb on + strand, within EX31_RS23075 at 377.597 kb on - strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.674 kb on + strand, within EX31_RS23075 at 377.675 kb on - strand, within EX31_RS23075 at 377.675 kb on - strand, within EX31_RS23075 at 377.675 kb on - strand, within EX31_RS23075 at 377.675 kb on - strand, within EX31_RS23075 at 377.675 kb on - strand, within EX31_RS23075 at 377.675 kb on - strand, within EX31_RS23075 at 377.675 kb on - strand, within EX31_RS23075 at 377.675 kb on - strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.676 kb on + strand, within EX31_RS23075 at 377.677 kb on - strand, within EX31_RS23075 at 377.677 kb on - strand, within EX31_RS23075 at 377.841 kb on + strand, within EX31_RS23075 at 377.842 kb on - strand, within EX31_RS23075 at 377.905 kb on + strand, within EX31_RS23075 at 377.905 kb on + strand, within EX31_RS23075 at 377.906 kb on - strand, within EX31_RS23075 at 377.931 kb on + strand, within EX31_RS23075 at 377.931 kb on + strand, within EX31_RS23075 at 377.931 kb on + strand, within EX31_RS23075 at 377.931 kb on + strand, within EX31_RS23075 at 377.931 kb on + strand, within EX31_RS23075 at 378.007 kb on + strand, within EX31_RS23075 at 378.007 kb on + strand, within EX31_RS23075 at 378.008 kb on - strand, within EX31_RS23075 at 378.008 kb on - strand, within EX31_RS23075 at 378.011 kb on - strand, within EX31_RS23075 at 378.122 kb on + strand at 378.122 kb on + strand at 378.122 kb on + strand at 378.123 kb on - strand at 378.123 kb on - strand at 378.123 kb on - strand at 378.145 kb on + strand at 378.145 kb on + strand at 378.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 375,257 + -0.0 375,257 + -0.3 375,257 + +0.9 375,258 - -0.9 375,258 - -1.3 375,258 - -0.5 375,258 - -1.2 375,291 + +0.4 375,291 + +1.3 375,520 + EX31_RS23065 0.35 -0.2 375,520 + EX31_RS23065 0.35 -0.1 375,522 + EX31_RS23065 0.35 +0.8 375,522 + EX31_RS23065 0.35 +0.3 375,523 - EX31_RS23065 0.35 +1.8 375,555 + EX31_RS23065 0.39 -0.0 375,584 - EX31_RS23065 0.43 -0.3 375,635 + EX31_RS23065 0.49 -0.2 375,636 - EX31_RS23065 0.49 +0.7 375,832 + EX31_RS23065 0.74 -0.9 375,832 + EX31_RS23065 0.74 -0.0 375,832 + EX31_RS23065 0.74 +0.1 375,832 + EX31_RS23065 0.74 +0.2 375,832 + EX31_RS23065 0.74 +0.7 375,832 + EX31_RS23065 0.74 -0.1 375,832 + EX31_RS23065 0.74 +0.2 375,832 + EX31_RS23065 0.74 +1.0 375,832 + EX31_RS23065 0.74 -0.8 375,832 + EX31_RS23065 0.74 +0.3 375,832 + EX31_RS23065 0.74 +0.5 375,832 + EX31_RS23065 0.74 +0.2 375,832 + EX31_RS23065 0.74 +1.1 375,832 + EX31_RS23065 0.74 +0.6 375,832 + EX31_RS23065 0.74 -1.6 375,832 + EX31_RS23065 0.74 -0.2 375,832 + EX31_RS23065 0.74 +0.8 375,832 + EX31_RS23065 0.74 +0.1 375,832 + EX31_RS23065 0.74 +1.0 375,832 + EX31_RS23065 0.74 -0.0 375,832 + EX31_RS23065 0.74 +0.8 375,832 + EX31_RS23065 0.74 +1.0 375,832 + EX31_RS23065 0.74 +0.4 375,832 + EX31_RS23065 0.74 +0.8 375,832 + EX31_RS23065 0.74 +0.4 375,832 + EX31_RS23065 0.74 -2.3 375,832 + EX31_RS23065 0.74 +0.9 375,832 + EX31_RS23065 0.74 +0.2 375,832 + EX31_RS23065 0.74 -0.0 375,832 + EX31_RS23065 0.74 -1.2 375,833 - EX31_RS23065 0.74 -1.3 375,833 - EX31_RS23065 0.74 -0.7 375,833 - EX31_RS23065 0.74 -1.6 375,833 - EX31_RS23065 0.74 +1.3 375,833 - EX31_RS23065 0.74 -1.2 375,833 - EX31_RS23065 0.74 +0.3 375,833 - EX31_RS23065 0.74 -0.5 375,833 - EX31_RS23065 0.74 -0.8 375,833 - EX31_RS23065 0.74 -0.7 375,833 - EX31_RS23065 0.74 -1.3 375,833 - EX31_RS23065 0.74 +0.2 375,834 + EX31_RS23065 0.74 +0.7 375,834 + EX31_RS23065 0.74 +0.2 375,834 + EX31_RS23065 0.74 +0.7 375,834 + EX31_RS23065 0.74 +0.4 375,835 - EX31_RS23065 0.74 -0.5 375,835 - EX31_RS23065 0.74 +1.4 375,835 - EX31_RS23065 0.74 +1.1 375,879 + EX31_RS23065 0.80 -1.6 375,879 + EX31_RS23065 0.80 -1.1 375,879 + EX31_RS23065 0.80 +0.3 375,879 + EX31_RS23065 0.80 +0.5 375,879 + EX31_RS23065 0.80 +0.1 375,879 + EX31_RS23065 0.80 +0.8 376,085 + +0.7 376,123 + +0.5 376,137 + -0.1 376,171 + -0.6 376,171 + -0.2 376,172 - -1.6 376,180 + +0.3 376,180 + +0.1 376,180 + +0.1 376,180 + -0.6 376,181 - -0.2 376,197 + +0.4 376,219 - +0.4 376,269 + +0.0 376,284 + -0.9 376,302 + -0.7 376,303 - -0.6 376,371 + EX31_RS23070 0.15 +0.6 376,372 - EX31_RS23070 0.15 -0.4 376,655 + EX31_RS23070 0.46 +0.1 376,655 + EX31_RS23070 0.46 -1.1 376,655 + EX31_RS23070 0.46 -0.1 376,656 - EX31_RS23070 0.46 +0.2 376,656 - EX31_RS23070 0.46 -2.7 376,711 + EX31_RS23070 0.52 -0.9 376,712 - EX31_RS23070 0.52 -2.3 376,815 + EX31_RS23070 0.63 -0.4 376,838 - EX31_RS23070 0.66 -1.8 376,861 + EX31_RS23070 0.69 +0.2 376,904 + EX31_RS23070 0.73 -1.4 376,904 + EX31_RS23070 0.73 +0.4 376,905 - EX31_RS23070 0.73 -1.3 376,905 - EX31_RS23070 0.73 -1.0 377,060 + -0.0 377,060 + +0.1 377,098 + -0.7 377,098 + -0.8 377,098 + -0.7 377,098 + +0.3 377,098 + -0.2 377,098 + +0.4 377,119 + +0.3 377,141 - -1.1 377,141 - -0.7 377,141 - +0.7 377,151 + +1.5 377,160 + +0.2 377,160 + -0.6 377,160 + +0.5 377,188 + +0.7 377,189 - +0.3 377,191 - -0.3 377,191 - -0.0 377,208 + -0.5 377,209 - -0.3 377,239 + +1.4 377,239 + +0.2 377,240 - -1.0 377,240 - +1.9 377,391 + EX31_RS23075 0.25 -0.2 377,478 - EX31_RS23075 0.34 -1.6 377,488 + EX31_RS23075 0.35 +0.7 377,488 + EX31_RS23075 0.35 +1.4 377,488 + EX31_RS23075 0.35 -0.8 377,488 + EX31_RS23075 0.35 +0.4 377,488 + EX31_RS23075 0.35 +0.9 377,488 + EX31_RS23075 0.35 +1.0 377,488 + EX31_RS23075 0.35 -0.7 377,488 + EX31_RS23075 0.35 +1.3 377,489 - EX31_RS23075 0.35 -1.1 377,489 - EX31_RS23075 0.35 +0.0 377,489 - EX31_RS23075 0.35 -1.9 377,489 - EX31_RS23075 0.35 +1.1 377,490 + EX31_RS23075 0.35 -0.1 377,490 + EX31_RS23075 0.35 -0.1 377,528 + EX31_RS23075 0.39 +0.5 377,528 + EX31_RS23075 0.39 +0.5 377,528 + EX31_RS23075 0.39 +1.7 377,528 + EX31_RS23075 0.39 +0.8 377,529 - EX31_RS23075 0.39 -0.2 377,529 - EX31_RS23075 0.39 -1.3 377,539 + EX31_RS23075 0.40 -0.3 377,540 - EX31_RS23075 0.40 -0.2 377,540 - EX31_RS23075 0.40 -0.9 377,596 + EX31_RS23075 0.46 -0.1 377,596 + EX31_RS23075 0.46 +0.2 377,596 + EX31_RS23075 0.46 -2.3 377,596 + EX31_RS23075 0.46 -0.5 377,597 - EX31_RS23075 0.46 +1.2 377,674 + EX31_RS23075 0.54 -0.1 377,674 + EX31_RS23075 0.54 +0.0 377,674 + EX31_RS23075 0.54 +0.2 377,674 + EX31_RS23075 0.54 +0.3 377,674 + EX31_RS23075 0.54 -1.6 377,674 + EX31_RS23075 0.54 +0.4 377,674 + EX31_RS23075 0.54 +0.8 377,674 + EX31_RS23075 0.54 -0.1 377,674 + EX31_RS23075 0.54 -0.7 377,674 + EX31_RS23075 0.54 +0.1 377,674 + EX31_RS23075 0.54 -0.2 377,674 + EX31_RS23075 0.54 +1.2 377,674 + EX31_RS23075 0.54 -1.3 377,674 + EX31_RS23075 0.54 +0.5 377,674 + EX31_RS23075 0.54 +0.1 377,674 + EX31_RS23075 0.54 -0.2 377,674 + EX31_RS23075 0.54 +0.4 377,675 - EX31_RS23075 0.54 -0.3 377,675 - EX31_RS23075 0.54 -1.5 377,675 - EX31_RS23075 0.54 -0.4 377,675 - EX31_RS23075 0.54 -2.3 377,675 - EX31_RS23075 0.54 -0.2 377,675 - EX31_RS23075 0.54 -1.3 377,675 - EX31_RS23075 0.54 -1.6 377,675 - EX31_RS23075 0.54 -0.9 377,676 + EX31_RS23075 0.54 +1.4 377,676 + EX31_RS23075 0.54 -1.0 377,676 + EX31_RS23075 0.54 -0.4 377,676 + EX31_RS23075 0.54 -0.8 377,676 + EX31_RS23075 0.54 -0.3 377,676 + EX31_RS23075 0.54 +0.4 377,676 + EX31_RS23075 0.54 +0.5 377,676 + EX31_RS23075 0.54 -1.5 377,676 + EX31_RS23075 0.54 +0.1 377,676 + EX31_RS23075 0.54 -0.2 377,676 + EX31_RS23075 0.54 +0.3 377,676 + EX31_RS23075 0.54 +0.4 377,677 - EX31_RS23075 0.54 +0.4 377,677 - EX31_RS23075 0.54 -0.0 377,841 + EX31_RS23075 0.71 +0.5 377,842 - EX31_RS23075 0.71 -1.2 377,905 + EX31_RS23075 0.77 +0.1 377,905 + EX31_RS23075 0.77 +0.4 377,906 - EX31_RS23075 0.78 -0.1 377,931 + EX31_RS23075 0.80 -0.4 377,931 + EX31_RS23075 0.80 +0.0 377,931 + EX31_RS23075 0.80 -2.2 377,931 + EX31_RS23075 0.80 +0.4 377,931 + EX31_RS23075 0.80 +0.2 378,007 + EX31_RS23075 0.88 -0.7 378,007 + EX31_RS23075 0.88 +0.6 378,008 - EX31_RS23075 0.88 -0.4 378,008 - EX31_RS23075 0.88 -0.7 378,011 - EX31_RS23075 0.88 -0.4 378,122 + -0.6 378,122 + -0.2 378,122 + +0.7 378,123 - -0.3 378,123 - -0.3 378,123 - -0.0 378,145 + +1.4 378,145 + -0.1 378,145 + -0.5
Or see this region's nucleotide sequence