Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22710 and EX31_RS22715 are separated by 53 nucleotides EX31_RS22715 and EX31_RS22720 are separated by 27 nucleotides EX31_RS22720 and EX31_RS22725 are separated by 254 nucleotides
EX31_RS22710: EX31_RS22710 - DnaA inactivator Hda, at 302,330 to 303,037
_RS22710
EX31_RS22715: EX31_RS22715 - arsenate reductase (glutaredoxin), at 303,091 to 303,447
_RS22715
EX31_RS22720: EX31_RS22720 - M48 family metallopeptidase, at 303,475 to 305,013
_RS22720
EX31_RS22725: EX31_RS22725 - AI-2E family transporter, at 305,268 to 306,332
_RS22725
Position (kb) 303
304
305
306 Strain fitness (log2 ratio) -2
-1
0
1
2 at 303.094 kb on + strand at 303.095 kb on - strand at 303.095 kb on - strand at 303.244 kb on - strand, within EX31_RS22715 at 303.245 kb on + strand, within EX31_RS22715 at 303.246 kb on - strand, within EX31_RS22715 at 303.319 kb on - strand, within EX31_RS22715 at 303.421 kb on - strand at 303.421 kb on - strand at 303.426 kb on - strand at 303.426 kb on - strand at 303.426 kb on - strand at 303.426 kb on - strand at 303.426 kb on - strand at 303.572 kb on - strand at 303.572 kb on - strand at 303.586 kb on - strand at 303.622 kb on + strand at 303.664 kb on + strand, within EX31_RS22720 at 303.665 kb on - strand, within EX31_RS22720 at 303.723 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.733 kb on - strand, within EX31_RS22720 at 303.734 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.782 kb on + strand, within EX31_RS22720 at 303.883 kb on - strand, within EX31_RS22720 at 303.908 kb on - strand, within EX31_RS22720 at 303.981 kb on + strand, within EX31_RS22720 at 303.982 kb on - strand, within EX31_RS22720 at 303.983 kb on + strand, within EX31_RS22720 at 303.983 kb on + strand, within EX31_RS22720 at 304.004 kb on + strand, within EX31_RS22720 at 304.004 kb on + strand, within EX31_RS22720 at 304.005 kb on - strand, within EX31_RS22720 at 304.005 kb on - strand, within EX31_RS22720 at 304.005 kb on - strand, within EX31_RS22720 at 304.055 kb on + strand, within EX31_RS22720 at 304.056 kb on - strand, within EX31_RS22720 at 304.056 kb on - strand, within EX31_RS22720 at 304.056 kb on - strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.088 kb on + strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.089 kb on - strand, within EX31_RS22720 at 304.100 kb on - strand, within EX31_RS22720 at 304.100 kb on - strand, within EX31_RS22720 at 304.105 kb on + strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.106 kb on - strand, within EX31_RS22720 at 304.121 kb on + strand, within EX31_RS22720 at 304.239 kb on - strand, within EX31_RS22720 at 304.307 kb on - strand, within EX31_RS22720 at 304.307 kb on - strand, within EX31_RS22720 at 304.307 kb on - strand, within EX31_RS22720 at 304.384 kb on + strand, within EX31_RS22720 at 304.384 kb on + strand, within EX31_RS22720 at 304.385 kb on - strand, within EX31_RS22720 at 304.385 kb on - strand, within EX31_RS22720 at 304.385 kb on - strand, within EX31_RS22720 at 304.385 kb on - strand, within EX31_RS22720 at 304.477 kb on - strand, within EX31_RS22720 at 304.572 kb on + strand, within EX31_RS22720 at 304.574 kb on + strand, within EX31_RS22720 at 304.679 kb on + strand, within EX31_RS22720 at 304.680 kb on - strand, within EX31_RS22720 at 304.680 kb on - strand, within EX31_RS22720 at 304.776 kb on - strand, within EX31_RS22720 at 304.776 kb on - strand, within EX31_RS22720 at 304.793 kb on - strand, within EX31_RS22720 at 304.793 kb on - strand, within EX31_RS22720 at 304.807 kb on - strand, within EX31_RS22720 at 304.816 kb on - strand, within EX31_RS22720 at 304.878 kb on + strand at 304.889 kb on - strand at 304.889 kb on - strand at 305.007 kb on + strand at 305.008 kb on - strand at 305.025 kb on + strand at 305.121 kb on + strand at 305.121 kb on + strand at 305.122 kb on - strand at 305.122 kb on - strand at 305.122 kb on - strand at 305.123 kb on + strand at 305.123 kb on + strand at 305.123 kb on + strand at 305.123 kb on + strand at 305.123 kb on + strand at 305.124 kb on - strand at 305.124 kb on - strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.126 kb on + strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.127 kb on - strand at 305.130 kb on + strand at 305.147 kb on - strand at 305.147 kb on - strand at 305.162 kb on + strand at 305.162 kb on + strand at 305.162 kb on + strand at 305.162 kb on + strand at 305.163 kb on - strand at 305.163 kb on - strand at 305.163 kb on - strand at 305.163 kb on - strand at 305.163 kb on - strand at 305.191 kb on + strand at 305.191 kb on + strand at 305.191 kb on + strand at 305.192 kb on - strand at 305.192 kb on - strand at 305.192 kb on - strand at 305.192 kb on - strand at 305.192 kb on - strand at 305.195 kb on + strand at 305.195 kb on + strand at 305.195 kb on + strand at 305.195 kb on + strand at 305.195 kb on + strand at 305.195 kb on + strand at 305.195 kb on + strand at 305.195 kb on + strand at 305.196 kb on - strand at 305.196 kb on - strand at 305.196 kb on - strand at 305.196 kb on - strand at 305.196 kb on - strand at 305.196 kb on - strand at 305.232 kb on - strand at 305.232 kb on - strand at 305.276 kb on + strand at 305.276 kb on + strand at 305.277 kb on - strand at 305.281 kb on + strand at 305.281 kb on + strand at 305.281 kb on + strand at 305.281 kb on + strand at 305.282 kb on - strand at 305.282 kb on - strand at 305.282 kb on - strand at 305.282 kb on - strand at 305.282 kb on - strand at 305.282 kb on - strand at 305.282 kb on - strand at 305.284 kb on + strand at 305.284 kb on + strand at 305.285 kb on - strand at 305.285 kb on - strand at 305.285 kb on - strand at 305.285 kb on - strand at 305.285 kb on - strand at 305.285 kb on - strand at 305.285 kb on - strand at 305.285 kb on - strand at 305.293 kb on - strand at 305.364 kb on + strand at 305.379 kb on - strand, within EX31_RS22725 at 305.407 kb on + strand, within EX31_RS22725 at 305.415 kb on + strand, within EX31_RS22725 at 305.415 kb on + strand, within EX31_RS22725 at 305.416 kb on - strand, within EX31_RS22725 at 305.519 kb on + strand, within EX31_RS22725 at 305.520 kb on - strand, within EX31_RS22725 at 305.599 kb on - strand, within EX31_RS22725 at 305.661 kb on - strand, within EX31_RS22725 at 305.661 kb on - strand, within EX31_RS22725 at 305.718 kb on + strand, within EX31_RS22725 at 305.718 kb on + strand, within EX31_RS22725 at 305.718 kb on + strand, within EX31_RS22725 at 305.743 kb on + strand, within EX31_RS22725 at 305.744 kb on - strand, within EX31_RS22725 at 305.760 kb on + strand, within EX31_RS22725 at 305.761 kb on - strand, within EX31_RS22725 at 305.804 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.901 kb on + strand, within EX31_RS22725 at 305.902 kb on - strand, within EX31_RS22725 at 305.902 kb on - strand, within EX31_RS22725 at 305.902 kb on - strand, within EX31_RS22725 at 305.902 kb on - strand, within EX31_RS22725 at 305.902 kb on - strand, within EX31_RS22725 at 305.903 kb on + strand, within EX31_RS22725 at 305.903 kb on + strand, within EX31_RS22725 at 305.904 kb on - strand, within EX31_RS22725 at 305.949 kb on + strand, within EX31_RS22725 at 305.949 kb on + strand, within EX31_RS22725 at 305.949 kb on + strand, within EX31_RS22725 at 305.949 kb on + strand, within EX31_RS22725 at 305.949 kb on + strand, within EX31_RS22725 at 305.949 kb on + strand, within EX31_RS22725 at 305.949 kb on + strand, within EX31_RS22725 at 305.950 kb on - strand, within EX31_RS22725 at 305.950 kb on - strand, within EX31_RS22725 at 305.950 kb on - strand, within EX31_RS22725 at 305.950 kb on - strand, within EX31_RS22725 at 305.950 kb on - strand, within EX31_RS22725 at 305.950 kb on - strand, within EX31_RS22725 at 305.950 kb on - strand, within EX31_RS22725
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 303,094 + -0.2 303,095 - -0.5 303,095 - -0.8 303,244 - EX31_RS22715 0.43 +1.2 303,245 + EX31_RS22715 0.43 +0.1 303,246 - EX31_RS22715 0.43 -1.2 303,319 - EX31_RS22715 0.64 +0.3 303,421 - +0.7 303,421 - -0.3 303,426 - -0.8 303,426 - -0.1 303,426 - +0.6 303,426 - +0.9 303,426 - +1.3 303,572 - +0.6 303,572 - +0.4 303,586 - +0.5 303,622 + +0.0 303,664 + EX31_RS22720 0.12 +0.7 303,665 - EX31_RS22720 0.12 -0.4 303,723 - EX31_RS22720 0.16 +0.4 303,733 - EX31_RS22720 0.17 +1.0 303,733 - EX31_RS22720 0.17 -0.1 303,733 - EX31_RS22720 0.17 +0.5 303,733 - EX31_RS22720 0.17 +0.3 303,733 - EX31_RS22720 0.17 -0.3 303,733 - EX31_RS22720 0.17 -0.2 303,734 + EX31_RS22720 0.17 -0.2 303,782 + EX31_RS22720 0.20 -0.8 303,782 + EX31_RS22720 0.20 +0.2 303,782 + EX31_RS22720 0.20 +0.4 303,782 + EX31_RS22720 0.20 -2.1 303,782 + EX31_RS22720 0.20 -0.7 303,782 + EX31_RS22720 0.20 +0.1 303,883 - EX31_RS22720 0.27 -1.6 303,908 - EX31_RS22720 0.28 +0.6 303,981 + EX31_RS22720 0.33 +0.5 303,982 - EX31_RS22720 0.33 +0.2 303,983 + EX31_RS22720 0.33 +1.3 303,983 + EX31_RS22720 0.33 +0.3 304,004 + EX31_RS22720 0.34 +0.1 304,004 + EX31_RS22720 0.34 -0.1 304,005 - EX31_RS22720 0.34 +0.4 304,005 - EX31_RS22720 0.34 -0.4 304,005 - EX31_RS22720 0.34 +0.5 304,055 + EX31_RS22720 0.38 -0.4 304,056 - EX31_RS22720 0.38 -0.0 304,056 - EX31_RS22720 0.38 +0.7 304,056 - EX31_RS22720 0.38 +0.7 304,088 + EX31_RS22720 0.40 +0.4 304,088 + EX31_RS22720 0.40 +0.1 304,088 + EX31_RS22720 0.40 +0.4 304,088 + EX31_RS22720 0.40 +1.3 304,088 + EX31_RS22720 0.40 +0.6 304,088 + EX31_RS22720 0.40 +0.1 304,088 + EX31_RS22720 0.40 -0.4 304,088 + EX31_RS22720 0.40 -0.5 304,088 + EX31_RS22720 0.40 +2.1 304,089 - EX31_RS22720 0.40 -0.6 304,089 - EX31_RS22720 0.40 +0.8 304,089 - EX31_RS22720 0.40 -0.3 304,089 - EX31_RS22720 0.40 +0.1 304,089 - EX31_RS22720 0.40 +0.4 304,089 - EX31_RS22720 0.40 +0.5 304,089 - EX31_RS22720 0.40 -1.0 304,089 - EX31_RS22720 0.40 +0.5 304,089 - EX31_RS22720 0.40 +0.1 304,100 - EX31_RS22720 0.41 +0.4 304,100 - EX31_RS22720 0.41 +0.4 304,105 + EX31_RS22720 0.41 +0.1 304,106 - EX31_RS22720 0.41 +0.9 304,106 - EX31_RS22720 0.41 -0.4 304,106 - EX31_RS22720 0.41 -0.3 304,106 - EX31_RS22720 0.41 -1.1 304,106 - EX31_RS22720 0.41 +0.3 304,106 - EX31_RS22720 0.41 +0.6 304,121 + EX31_RS22720 0.42 +0.2 304,239 - EX31_RS22720 0.50 -0.7 304,307 - EX31_RS22720 0.54 +1.0 304,307 - EX31_RS22720 0.54 +0.8 304,307 - EX31_RS22720 0.54 -0.5 304,384 + EX31_RS22720 0.59 -0.8 304,384 + EX31_RS22720 0.59 +0.1 304,385 - EX31_RS22720 0.59 +1.2 304,385 - EX31_RS22720 0.59 -0.3 304,385 - EX31_RS22720 0.59 -1.9 304,385 - EX31_RS22720 0.59 +0.1 304,477 - EX31_RS22720 0.65 -0.5 304,572 + EX31_RS22720 0.71 +1.0 304,574 + EX31_RS22720 0.71 +0.4 304,679 + EX31_RS22720 0.78 +0.5 304,680 - EX31_RS22720 0.78 -0.1 304,680 - EX31_RS22720 0.78 -0.1 304,776 - EX31_RS22720 0.85 +0.6 304,776 - EX31_RS22720 0.85 +0.4 304,793 - EX31_RS22720 0.86 -0.4 304,793 - EX31_RS22720 0.86 -0.2 304,807 - EX31_RS22720 0.87 +0.0 304,816 - EX31_RS22720 0.87 +0.4 304,878 + +0.8 304,889 - -0.5 304,889 - -0.2 305,007 + -1.9 305,008 - +0.7 305,025 + +0.2 305,121 + +0.4 305,121 + -0.1 305,122 - -0.4 305,122 - -0.2 305,122 - +0.1 305,123 + +0.6 305,123 + -0.7 305,123 + +0.9 305,123 + +0.1 305,123 + +0.5 305,124 - +0.5 305,124 - -0.8 305,126 + -0.7 305,126 + -0.2 305,126 + -0.8 305,126 + -0.8 305,126 + +0.1 305,126 + -1.0 305,126 + +1.4 305,126 + +0.2 305,126 + -0.5 305,126 + +0.1 305,126 + -0.8 305,126 + -0.2 305,126 + +0.5 305,126 + +0.6 305,126 + -2.7 305,126 + +1.3 305,126 + +1.0 305,126 + -1.8 305,126 + +0.4 305,126 + +0.1 305,127 - -0.3 305,127 - -0.0 305,127 - -0.4 305,127 - -0.4 305,127 - -0.1 305,127 - +0.5 305,127 - +0.4 305,127 - +0.1 305,127 - -0.4 305,127 - -0.8 305,127 - -0.2 305,127 - -0.4 305,127 - -0.4 305,127 - -0.3 305,127 - +0.7 305,127 - +0.2 305,127 - +0.2 305,127 - +0.5 305,130 + +0.4 305,147 - -2.1 305,147 - -0.0 305,162 + -1.1 305,162 + +0.8 305,162 + -0.6 305,162 + +0.4 305,163 - -0.6 305,163 - -0.3 305,163 - -0.0 305,163 - +0.1 305,163 - +0.1 305,191 + +1.1 305,191 + +0.9 305,191 + +1.4 305,192 - +0.4 305,192 - -0.4 305,192 - +0.6 305,192 - -1.0 305,192 - -0.9 305,195 + -1.4 305,195 + -1.1 305,195 + +0.1 305,195 + +0.1 305,195 + -1.3 305,195 + -2.1 305,195 + -1.1 305,195 + +0.2 305,196 - -0.2 305,196 - +0.8 305,196 - +0.2 305,196 - +0.2 305,196 - +0.6 305,196 - -0.6 305,232 - -0.2 305,232 - +1.0 305,276 + -0.0 305,276 + +0.2 305,277 - -1.1 305,281 + -0.7 305,281 + +0.6 305,281 + -0.5 305,281 + -0.8 305,282 - -0.7 305,282 - +0.3 305,282 - +0.3 305,282 - -0.4 305,282 - -0.4 305,282 - -0.8 305,282 - -0.3 305,284 + +0.6 305,284 + +0.8 305,285 - -0.5 305,285 - -0.8 305,285 - -0.4 305,285 - -0.9 305,285 - -0.4 305,285 - -0.2 305,285 - +1.9 305,285 - +0.2 305,293 - -0.2 305,364 + -0.6 305,379 - EX31_RS22725 0.10 +0.4 305,407 + EX31_RS22725 0.13 +0.3 305,415 + EX31_RS22725 0.14 -0.5 305,415 + EX31_RS22725 0.14 -0.3 305,416 - EX31_RS22725 0.14 -0.2 305,519 + EX31_RS22725 0.24 -0.0 305,520 - EX31_RS22725 0.24 -0.1 305,599 - EX31_RS22725 0.31 +0.3 305,661 - EX31_RS22725 0.37 -1.6 305,661 - EX31_RS22725 0.37 -0.5 305,718 + EX31_RS22725 0.42 -0.4 305,718 + EX31_RS22725 0.42 +0.6 305,718 + EX31_RS22725 0.42 -0.2 305,743 + EX31_RS22725 0.45 -0.7 305,744 - EX31_RS22725 0.45 +0.4 305,760 + EX31_RS22725 0.46 -0.2 305,761 - EX31_RS22725 0.46 +0.5 305,804 + EX31_RS22725 0.50 -0.4 305,901 + EX31_RS22725 0.59 +0.4 305,901 + EX31_RS22725 0.59 +0.3 305,901 + EX31_RS22725 0.59 +0.1 305,901 + EX31_RS22725 0.59 +0.4 305,901 + EX31_RS22725 0.59 +0.2 305,901 + EX31_RS22725 0.59 -0.7 305,901 + EX31_RS22725 0.59 -0.5 305,901 + EX31_RS22725 0.59 -0.5 305,901 + EX31_RS22725 0.59 +0.3 305,901 + EX31_RS22725 0.59 +0.8 305,901 + EX31_RS22725 0.59 -0.1 305,901 + EX31_RS22725 0.59 +0.8 305,902 - EX31_RS22725 0.60 +0.6 305,902 - EX31_RS22725 0.60 -1.4 305,902 - EX31_RS22725 0.60 -1.7 305,902 - EX31_RS22725 0.60 -0.3 305,902 - EX31_RS22725 0.60 +1.2 305,903 + EX31_RS22725 0.60 +0.9 305,903 + EX31_RS22725 0.60 -0.0 305,904 - EX31_RS22725 0.60 -0.5 305,949 + EX31_RS22725 0.64 +0.3 305,949 + EX31_RS22725 0.64 +0.1 305,949 + EX31_RS22725 0.64 -0.4 305,949 + EX31_RS22725 0.64 +0.0 305,949 + EX31_RS22725 0.64 -1.1 305,949 + EX31_RS22725 0.64 +0.4 305,949 + EX31_RS22725 0.64 -0.3 305,950 - EX31_RS22725 0.64 +0.1 305,950 - EX31_RS22725 0.64 -0.3 305,950 - EX31_RS22725 0.64 -0.1 305,950 - EX31_RS22725 0.64 -0.3 305,950 - EX31_RS22725 0.64 -1.1 305,950 - EX31_RS22725 0.64 -0.1 305,950 - EX31_RS22725 0.64 +0.3
Or see this region's nucleotide sequence