Strain Fitness in Rahnella sp. WP5 around EX31_RS21900

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21895 and EX31_RS21900 are separated by 275 nucleotidesEX31_RS21900 and EX31_RS21905 are separated by 196 nucleotidesEX31_RS21905 and EX31_RS21910 are separated by 170 nucleotides EX31_RS21895: EX31_RS21895 - phosphoribosylformylglycinamidine synthase, at 121,058 to 124,948 _RS21895 EX31_RS21900: EX31_RS21900 - phospholipid:lipid A palmitoyltransferase, at 125,224 to 125,847 _RS21900 EX31_RS21905: EX31_RS21905 - phospholipid:lipid A palmitoyltransferase, at 126,044 to 126,664 _RS21905 EX31_RS21910: EX31_RS21910 - bifunctional glucose-1-phosphatase/inositol phosphatase, at 126,835 to 128,136 _RS21910 Position (kb) 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1at 124.273 kb on + strand, within EX31_RS21895at 124.273 kb on + strand, within EX31_RS21895at 124.273 kb on + strand, within EX31_RS21895at 124.274 kb on - strand, within EX31_RS21895at 124.274 kb on - strand, within EX31_RS21895at 124.274 kb on - strand, within EX31_RS21895at 124.274 kb on - strand, within EX31_RS21895at 124.274 kb on - strand, within EX31_RS21895at 124.274 kb on - strand, within EX31_RS21895at 124.274 kb on - strand, within EX31_RS21895at 124.274 kb on - strand, within EX31_RS21895at 124.274 kb on - strand, within EX31_RS21895at 124.305 kb on + strand, within EX31_RS21895at 124.305 kb on + strand, within EX31_RS21895at 124.305 kb on + strand, within EX31_RS21895at 124.306 kb on - strand, within EX31_RS21895at 124.326 kb on + strand, within EX31_RS21895at 124.347 kb on - strand, within EX31_RS21895at 124.347 kb on - strand, within EX31_RS21895at 124.347 kb on - strand, within EX31_RS21895at 124.603 kb on + strandat 124.603 kb on + strandat 124.627 kb on + strandat 124.627 kb on + strandat 124.628 kb on - strandat 124.628 kb on - strandat 124.628 kb on - strandat 124.628 kb on - strandat 124.804 kb on + strandat 124.805 kb on - strandat 124.827 kb on + strandat 124.827 kb on + strandat 124.828 kb on - strandat 124.828 kb on - strandat 124.953 kb on + strandat 124.953 kb on + strandat 124.954 kb on - strandat 124.956 kb on + strandat 124.956 kb on + strandat 124.956 kb on + strandat 125.072 kb on + strandat 125.122 kb on - strandat 125.161 kb on - strandat 125.169 kb on - strandat 125.170 kb on + strandat 125.171 kb on - strandat 125.186 kb on + strandat 125.188 kb on + strandat 125.189 kb on - strandat 125.329 kb on - strand, within EX31_RS21900at 125.394 kb on + strand, within EX31_RS21900at 125.469 kb on + strand, within EX31_RS21900at 125.470 kb on - strand, within EX31_RS21900at 125.470 kb on - strand, within EX31_RS21900at 125.499 kb on + strand, within EX31_RS21900at 125.500 kb on - strand, within EX31_RS21900at 125.570 kb on - strand, within EX31_RS21900at 125.596 kb on - strand, within EX31_RS21900at 125.681 kb on - strand, within EX31_RS21900at 125.681 kb on - strand, within EX31_RS21900at 125.682 kb on + strand, within EX31_RS21900at 125.683 kb on - strand, within EX31_RS21900at 125.683 kb on - strand, within EX31_RS21900at 125.684 kb on + strand, within EX31_RS21900at 125.684 kb on + strand, within EX31_RS21900at 125.684 kb on + strand, within EX31_RS21900at 125.684 kb on + strand, within EX31_RS21900at 125.685 kb on - strand, within EX31_RS21900at 125.685 kb on - strand, within EX31_RS21900at 125.685 kb on - strand, within EX31_RS21900at 125.685 kb on - strand, within EX31_RS21900at 125.710 kb on + strand, within EX31_RS21900at 125.716 kb on + strand, within EX31_RS21900at 125.781 kb on + strand, within EX31_RS21900at 125.781 kb on + strand, within EX31_RS21900at 125.785 kb on + strandat 125.785 kb on + strandat 125.785 kb on + strandat 125.786 kb on - strandat 125.786 kb on - strandat 125.959 kb on + strandat 125.976 kb on - strandat 126.014 kb on + strandat 126.058 kb on + strandat 126.124 kb on + strand, within EX31_RS21905at 126.124 kb on + strand, within EX31_RS21905at 126.125 kb on - strand, within EX31_RS21905at 126.127 kb on + strand, within EX31_RS21905at 126.127 kb on + strand, within EX31_RS21905at 126.254 kb on + strand, within EX31_RS21905at 126.277 kb on + strand, within EX31_RS21905at 126.290 kb on + strand, within EX31_RS21905at 126.295 kb on + strand, within EX31_RS21905at 126.314 kb on + strand, within EX31_RS21905at 126.314 kb on + strand, within EX31_RS21905at 126.314 kb on + strand, within EX31_RS21905at 126.315 kb on - strand, within EX31_RS21905at 126.315 kb on - strand, within EX31_RS21905at 126.346 kb on + strand, within EX31_RS21905at 126.346 kb on + strand, within EX31_RS21905at 126.346 kb on + strand, within EX31_RS21905at 126.346 kb on + strand, within EX31_RS21905at 126.347 kb on - strand, within EX31_RS21905at 126.356 kb on + strand, within EX31_RS21905at 126.370 kb on + strand, within EX31_RS21905at 126.386 kb on + strand, within EX31_RS21905at 126.400 kb on + strand, within EX31_RS21905at 126.415 kb on + strand, within EX31_RS21905at 126.415 kb on + strand, within EX31_RS21905at 126.415 kb on + strand, within EX31_RS21905at 126.416 kb on - strand, within EX31_RS21905at 126.416 kb on - strand, within EX31_RS21905at 126.416 kb on - strand, within EX31_RS21905at 126.416 kb on - strand, within EX31_RS21905at 126.472 kb on + strand, within EX31_RS21905at 126.498 kb on - strand, within EX31_RS21905at 126.498 kb on - strand, within EX31_RS21905at 126.498 kb on - strand, within EX31_RS21905at 126.500 kb on - strand, within EX31_RS21905at 126.527 kb on + strand, within EX31_RS21905at 126.533 kb on + strand, within EX31_RS21905at 126.533 kb on + strand, within EX31_RS21905at 126.533 kb on + strand, within EX31_RS21905at 126.534 kb on - strand, within EX31_RS21905at 126.535 kb on + strand, within EX31_RS21905at 126.535 kb on + strand, within EX31_RS21905at 126.535 kb on + strand, within EX31_RS21905at 126.535 kb on + strand, within EX31_RS21905at 126.535 kb on + strand, within EX31_RS21905at 126.536 kb on - strand, within EX31_RS21905at 126.536 kb on - strand, within EX31_RS21905at 126.576 kb on - strand, within EX31_RS21905at 126.576 kb on - strand, within EX31_RS21905at 126.578 kb on - strand, within EX31_RS21905at 126.602 kb on + strand, within EX31_RS21905at 126.602 kb on + strand, within EX31_RS21905at 126.602 kb on + strand, within EX31_RS21905at 126.602 kb on + strand, within EX31_RS21905at 126.602 kb on + strand, within EX31_RS21905at 126.602 kb on + strand, within EX31_RS21905at 126.602 kb on + strand, within EX31_RS21905at 126.603 kb on - strandat 126.603 kb on - strandat 126.603 kb on - strandat 126.603 kb on - strandat 126.604 kb on + strandat 126.605 kb on - strandat 126.605 kb on - strandat 126.617 kb on + strandat 126.617 kb on + strandat 126.618 kb on - strandat 126.618 kb on - strandat 126.618 kb on - strandat 126.622 kb on + strandat 126.682 kb on + strandat 126.682 kb on + strandat 126.682 kb on + strandat 126.682 kb on + strandat 126.682 kb on + strandat 126.682 kb on + strandat 126.683 kb on - strandat 126.683 kb on - strandat 126.732 kb on - strandat 126.739 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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124,273 + EX31_RS21895 0.83 -1.6
124,273 + EX31_RS21895 0.83 -1.6
124,273 + EX31_RS21895 0.83 -2.7
124,274 - EX31_RS21895 0.83 -2.3
124,274 - EX31_RS21895 0.83 -3.5
124,274 - EX31_RS21895 0.83 -2.1
124,274 - EX31_RS21895 0.83 -2.4
124,274 - EX31_RS21895 0.83 -2.2
124,274 - EX31_RS21895 0.83 -0.8
124,274 - EX31_RS21895 0.83 -1.2
124,274 - EX31_RS21895 0.83 -1.1
124,274 - EX31_RS21895 0.83 -0.9
124,305 + EX31_RS21895 0.83 -1.3
124,305 + EX31_RS21895 0.83 -2.6
124,305 + EX31_RS21895 0.83 -2.2
124,306 - EX31_RS21895 0.83 -3.2
124,326 + EX31_RS21895 0.84 -0.9
124,347 - EX31_RS21895 0.85 -3.0
124,347 - EX31_RS21895 0.85 -0.3
124,347 - EX31_RS21895 0.85 -1.8
124,603 + -1.9
124,603 + -0.4
124,627 + -3.1
124,627 + -2.3
124,628 - -1.1
124,628 - -1.2
124,628 - -3.5
124,628 - -1.0
124,804 + -2.0
124,805 - -2.4
124,827 + -2.6
124,827 + -2.3
124,828 - -0.3
124,828 - +0.4
124,953 + +0.1
124,953 + +0.8
124,954 - +0.1
124,956 + +0.1
124,956 + +1.4
124,956 + -0.5
125,072 + -3.6
125,122 - +0.5
125,161 - -0.2
125,169 - -0.0
125,170 + -0.1
125,171 - -1.9
125,186 + +0.5
125,188 + -0.8
125,189 - -0.8
125,329 - EX31_RS21900 0.17 -1.6
125,394 + EX31_RS21900 0.27 -0.4
125,469 + EX31_RS21900 0.39 +0.4
125,470 - EX31_RS21900 0.39 -0.1
125,470 - EX31_RS21900 0.39 -1.1
125,499 + EX31_RS21900 0.44 +0.1
125,500 - EX31_RS21900 0.44 -0.2
125,570 - EX31_RS21900 0.55 -0.3
125,596 - EX31_RS21900 0.60 -0.0
125,681 - EX31_RS21900 0.73 -2.3
125,681 - EX31_RS21900 0.73 -2.3
125,682 + EX31_RS21900 0.73 +0.1
125,683 - EX31_RS21900 0.74 -0.3
125,683 - EX31_RS21900 0.74 -1.6
125,684 + EX31_RS21900 0.74 +0.5
125,684 + EX31_RS21900 0.74 -0.4
125,684 + EX31_RS21900 0.74 -0.5
125,684 + EX31_RS21900 0.74 -1.8
125,685 - EX31_RS21900 0.74 -0.8
125,685 - EX31_RS21900 0.74 +0.8
125,685 - EX31_RS21900 0.74 -1.2
125,685 - EX31_RS21900 0.74 -2.4
125,710 + EX31_RS21900 0.78 -0.7
125,716 + EX31_RS21900 0.79 -0.0
125,781 + EX31_RS21900 0.89 -1.0
125,781 + EX31_RS21900 0.89 +0.0
125,785 + -0.9
125,785 + -0.2
125,785 + -1.5
125,786 - +0.3
125,786 - -0.3
125,959 + -0.5
125,976 - -1.3
126,014 + -0.3
126,058 + +0.2
126,124 + EX31_RS21905 0.13 +0.1
126,124 + EX31_RS21905 0.13 -1.2
126,125 - EX31_RS21905 0.13 -0.5
126,127 + EX31_RS21905 0.13 -0.5
126,127 + EX31_RS21905 0.13 -0.3
126,254 + EX31_RS21905 0.34 +0.8
126,277 + EX31_RS21905 0.38 +0.8
126,290 + EX31_RS21905 0.40 +0.7
126,295 + EX31_RS21905 0.40 +0.6
126,314 + EX31_RS21905 0.43 -0.4
126,314 + EX31_RS21905 0.43 +0.4
126,314 + EX31_RS21905 0.43 +0.7
126,315 - EX31_RS21905 0.44 -0.1
126,315 - EX31_RS21905 0.44 -1.1
126,346 + EX31_RS21905 0.49 +0.2
126,346 + EX31_RS21905 0.49 -0.7
126,346 + EX31_RS21905 0.49 -0.1
126,346 + EX31_RS21905 0.49 -1.0
126,347 - EX31_RS21905 0.49 +0.1
126,356 + EX31_RS21905 0.50 -0.3
126,370 + EX31_RS21905 0.52 -0.2
126,386 + EX31_RS21905 0.55 -0.9
126,400 + EX31_RS21905 0.57 -1.3
126,415 + EX31_RS21905 0.60 -0.4
126,415 + EX31_RS21905 0.60 -0.3
126,415 + EX31_RS21905 0.60 -0.7
126,416 - EX31_RS21905 0.60 -0.7
126,416 - EX31_RS21905 0.60 -0.9
126,416 - EX31_RS21905 0.60 -0.3
126,416 - EX31_RS21905 0.60 -0.1
126,472 + EX31_RS21905 0.69 -0.6
126,498 - EX31_RS21905 0.73 -1.5
126,498 - EX31_RS21905 0.73 +0.3
126,498 - EX31_RS21905 0.73 -0.4
126,500 - EX31_RS21905 0.73 -0.1
126,527 + EX31_RS21905 0.78 -1.0
126,533 + EX31_RS21905 0.79 +0.0
126,533 + EX31_RS21905 0.79 +0.4
126,533 + EX31_RS21905 0.79 -1.3
126,534 - EX31_RS21905 0.79 -1.0
126,535 + EX31_RS21905 0.79 -0.5
126,535 + EX31_RS21905 0.79 -0.7
126,535 + EX31_RS21905 0.79 -0.0
126,535 + EX31_RS21905 0.79 +1.4
126,535 + EX31_RS21905 0.79 -0.5
126,536 - EX31_RS21905 0.79 -2.4
126,536 - EX31_RS21905 0.79 -3.0
126,576 - EX31_RS21905 0.86 +0.3
126,576 - EX31_RS21905 0.86 +0.1
126,578 - EX31_RS21905 0.86 -0.2
126,602 + EX31_RS21905 0.90 -0.6
126,602 + EX31_RS21905 0.90 -0.1
126,602 + EX31_RS21905 0.90 -0.8
126,602 + EX31_RS21905 0.90 +0.2
126,602 + EX31_RS21905 0.90 +0.4
126,602 + EX31_RS21905 0.90 -1.1
126,602 + EX31_RS21905 0.90 +0.6
126,603 - -0.8
126,603 - -0.5
126,603 - -0.5
126,603 - +1.2
126,604 + +0.1
126,605 - -0.7
126,605 - -0.7
126,617 + +0.3
126,617 + +0.3
126,618 - -0.4
126,618 - +0.5
126,618 - +1.6
126,622 + -0.8
126,682 + -0.1
126,682 + +1.2
126,682 + +0.8
126,682 + -0.0
126,682 + +0.4
126,682 + +0.2
126,683 - +0.4
126,683 - -1.2
126,732 - -0.5
126,739 + +0.1

Or see this region's nucleotide sequence