Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21775 and EX31_RS21780 are separated by 339 nucleotides EX31_RS21780 and EX31_RS21785 are separated by 92 nucleotides
EX31_RS21775: EX31_RS21775 - uracil-DNA glycosylase, at 98,154 to 98,834
_RS21775
EX31_RS21780: EX31_RS21780 - autonomous glycyl radical cofactor GrcA, at 99,174 to 99,557
_RS21780
EX31_RS21785: EX31_RS21785 - ATP-dependent RNA helicase SrmB, at 99,650 to 100,978
_RS21785
Position (kb) 99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 98.234 kb on + strand, within EX31_RS21775 at 98.234 kb on + strand, within EX31_RS21775 at 98.234 kb on + strand, within EX31_RS21775 at 98.235 kb on - strand, within EX31_RS21775 at 98.235 kb on - strand, within EX31_RS21775 at 98.235 kb on - strand, within EX31_RS21775 at 98.235 kb on - strand, within EX31_RS21775 at 98.235 kb on - strand, within EX31_RS21775 at 98.289 kb on + strand, within EX31_RS21775 at 98.289 kb on + strand, within EX31_RS21775 at 98.290 kb on - strand, within EX31_RS21775 at 98.290 kb on - strand, within EX31_RS21775 at 98.315 kb on + strand, within EX31_RS21775 at 98.316 kb on - strand, within EX31_RS21775 at 98.349 kb on + strand, within EX31_RS21775 at 98.350 kb on - strand, within EX31_RS21775 at 98.396 kb on + strand, within EX31_RS21775 at 98.396 kb on + strand, within EX31_RS21775 at 98.402 kb on + strand, within EX31_RS21775 at 98.507 kb on - strand, within EX31_RS21775 at 98.555 kb on + strand, within EX31_RS21775 at 98.555 kb on + strand, within EX31_RS21775 at 98.555 kb on + strand, within EX31_RS21775 at 98.556 kb on - strand, within EX31_RS21775 at 98.556 kb on - strand, within EX31_RS21775 at 98.556 kb on - strand, within EX31_RS21775 at 98.556 kb on - strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.557 kb on + strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.558 kb on - strand, within EX31_RS21775 at 98.561 kb on + strand, within EX31_RS21775 at 98.561 kb on + strand, within EX31_RS21775 at 98.561 kb on + strand, within EX31_RS21775 at 98.561 kb on + strand, within EX31_RS21775 at 98.561 kb on + strand, within EX31_RS21775 at 98.562 kb on - strand, within EX31_RS21775 at 98.562 kb on - strand, within EX31_RS21775 at 98.562 kb on - strand, within EX31_RS21775 at 98.562 kb on - strand, within EX31_RS21775 at 98.638 kb on + strand, within EX31_RS21775 at 98.639 kb on - strand, within EX31_RS21775 at 98.699 kb on + strand, within EX31_RS21775 at 98.699 kb on + strand, within EX31_RS21775 at 98.722 kb on + strand, within EX31_RS21775 at 98.769 kb on - strand at 98.779 kb on + strand at 98.779 kb on + strand at 98.779 kb on + strand at 98.779 kb on + strand at 98.780 kb on - strand at 98.780 kb on - strand at 98.780 kb on - strand at 98.780 kb on - strand at 98.780 kb on - strand at 98.780 kb on - strand at 98.780 kb on - strand at 98.780 kb on - strand at 98.855 kb on + strand at 98.877 kb on + strand at 98.877 kb on + strand at 98.878 kb on - strand at 98.926 kb on + strand at 98.927 kb on - strand at 98.937 kb on + strand at 98.937 kb on + strand at 98.937 kb on + strand at 98.938 kb on - strand at 98.938 kb on - strand at 98.938 kb on - strand at 99.009 kb on - strand at 99.015 kb on + strand at 99.015 kb on + strand at 99.015 kb on + strand at 99.015 kb on + strand at 99.015 kb on + strand at 99.016 kb on - strand at 99.016 kb on - strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.037 kb on + strand at 99.059 kb on - strand at 99.090 kb on + strand at 99.090 kb on + strand at 99.090 kb on + strand at 99.090 kb on + strand at 99.092 kb on + strand at 99.093 kb on - strand at 99.093 kb on - strand at 99.093 kb on - strand at 99.093 kb on - strand at 99.093 kb on - strand at 99.093 kb on - strand at 99.093 kb on - strand at 99.093 kb on - strand at 99.128 kb on + strand at 99.128 kb on + strand at 99.128 kb on + strand at 99.128 kb on + strand at 99.128 kb on + strand at 99.129 kb on - strand at 99.129 kb on - strand at 99.129 kb on - strand at 99.129 kb on - strand at 99.141 kb on + strand at 99.141 kb on + strand at 99.142 kb on - strand at 99.142 kb on - strand at 99.142 kb on - strand at 99.147 kb on + strand at 99.147 kb on + strand at 99.147 kb on + strand at 99.152 kb on + strand at 99.152 kb on + strand at 99.173 kb on + strand at 99.173 kb on + strand at 99.173 kb on + strand at 99.173 kb on + strand at 99.173 kb on + strand at 99.173 kb on + strand at 99.173 kb on + strand at 99.173 kb on + strand at 99.173 kb on + strand at 99.173 kb on + strand at 99.174 kb on - strand at 99.174 kb on - strand at 99.174 kb on - strand at 99.174 kb on - strand at 99.174 kb on - strand at 99.174 kb on - strand at 99.174 kb on - strand at 99.174 kb on - strand at 99.174 kb on - strand at 99.174 kb on - strand at 99.194 kb on + strand at 99.195 kb on - strand at 99.195 kb on - strand at 99.198 kb on - strand at 99.334 kb on - strand, within EX31_RS21780 at 99.343 kb on + strand, within EX31_RS21780 at 99.343 kb on + strand, within EX31_RS21780 at 99.343 kb on + strand, within EX31_RS21780 at 99.344 kb on - strand, within EX31_RS21780 at 99.367 kb on + strand, within EX31_RS21780 at 99.367 kb on + strand, within EX31_RS21780 at 99.367 kb on + strand, within EX31_RS21780 at 99.367 kb on + strand, within EX31_RS21780 at 99.367 kb on + strand, within EX31_RS21780 at 99.368 kb on - strand, within EX31_RS21780 at 99.368 kb on - strand, within EX31_RS21780 at 99.403 kb on + strand, within EX31_RS21780 at 99.403 kb on + strand, within EX31_RS21780 at 99.403 kb on + strand, within EX31_RS21780 at 99.494 kb on + strand, within EX31_RS21780 at 99.495 kb on - strand, within EX31_RS21780 at 99.495 kb on - strand, within EX31_RS21780 at 99.536 kb on + strand at 99.537 kb on - strand at 99.596 kb on + strand at 99.597 kb on - strand at 99.598 kb on + strand at 99.599 kb on - strand at 99.599 kb on - strand at 99.652 kb on - strand at 99.652 kb on - strand at 99.655 kb on + strand at 99.727 kb on + strand at 99.728 kb on - strand at 99.728 kb on - strand at 99.803 kb on - strand, within EX31_RS21785 at 99.803 kb on - strand, within EX31_RS21785 at 99.878 kb on - strand, within EX31_RS21785 at 99.883 kb on - strand, within EX31_RS21785 at 99.947 kb on - strand, within EX31_RS21785 at 99.985 kb on - strand, within EX31_RS21785 at 99.985 kb on - strand, within EX31_RS21785 at 99.985 kb on - strand, within EX31_RS21785 at 99.985 kb on - strand, within EX31_RS21785 at 99.985 kb on - strand, within EX31_RS21785 at 99.985 kb on - strand, within EX31_RS21785 at 99.989 kb on - strand, within EX31_RS21785 at 99.989 kb on - strand, within EX31_RS21785 at 99.989 kb on - strand, within EX31_RS21785 at 99.989 kb on - strand, within EX31_RS21785 at 99.989 kb on - strand, within EX31_RS21785 at 100.100 kb on - strand, within EX31_RS21785 at 100.100 kb on - strand, within EX31_RS21785 at 100.100 kb on - strand, within EX31_RS21785 at 100.100 kb on - strand, within EX31_RS21785 at 100.100 kb on - strand, within EX31_RS21785 at 100.100 kb on - strand, within EX31_RS21785 at 100.150 kb on - strand, within EX31_RS21785 at 100.159 kb on + strand, within EX31_RS21785 at 100.160 kb on - strand, within EX31_RS21785 at 100.160 kb on - strand, within EX31_RS21785 at 100.160 kb on - strand, within EX31_RS21785 at 100.160 kb on - strand, within EX31_RS21785 at 100.160 kb on - strand, within EX31_RS21785 at 100.211 kb on - strand, within EX31_RS21785 at 100.277 kb on - strand, within EX31_RS21785 at 100.556 kb on - strand, within EX31_RS21785
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 98,234 + EX31_RS21775 0.12 -0.4 98,234 + EX31_RS21775 0.12 -0.3 98,234 + EX31_RS21775 0.12 +2.8 98,235 - EX31_RS21775 0.12 +0.4 98,235 - EX31_RS21775 0.12 +0.2 98,235 - EX31_RS21775 0.12 +0.8 98,235 - EX31_RS21775 0.12 +0.4 98,235 - EX31_RS21775 0.12 +0.8 98,289 + EX31_RS21775 0.20 -0.8 98,289 + EX31_RS21775 0.20 -0.6 98,290 - EX31_RS21775 0.20 +0.3 98,290 - EX31_RS21775 0.20 -0.5 98,315 + EX31_RS21775 0.24 -0.9 98,316 - EX31_RS21775 0.24 +0.9 98,349 + EX31_RS21775 0.29 -0.4 98,350 - EX31_RS21775 0.29 +0.9 98,396 + EX31_RS21775 0.36 -0.8 98,396 + EX31_RS21775 0.36 -0.2 98,402 + EX31_RS21775 0.36 +0.9 98,507 - EX31_RS21775 0.52 -0.4 98,555 + EX31_RS21775 0.59 +0.2 98,555 + EX31_RS21775 0.59 -1.3 98,555 + EX31_RS21775 0.59 -0.1 98,556 - EX31_RS21775 0.59 +0.5 98,556 - EX31_RS21775 0.59 +0.3 98,556 - EX31_RS21775 0.59 +0.1 98,556 - EX31_RS21775 0.59 -0.7 98,557 + EX31_RS21775 0.59 +0.3 98,557 + EX31_RS21775 0.59 -0.3 98,557 + EX31_RS21775 0.59 -0.3 98,557 + EX31_RS21775 0.59 -2.2 98,557 + EX31_RS21775 0.59 -0.6 98,557 + EX31_RS21775 0.59 +0.6 98,557 + EX31_RS21775 0.59 -0.5 98,557 + EX31_RS21775 0.59 -1.1 98,557 + EX31_RS21775 0.59 -0.9 98,557 + EX31_RS21775 0.59 -1.2 98,557 + EX31_RS21775 0.59 +0.1 98,557 + EX31_RS21775 0.59 +1.0 98,557 + EX31_RS21775 0.59 -0.9 98,558 - EX31_RS21775 0.59 -0.8 98,558 - EX31_RS21775 0.59 -0.0 98,558 - EX31_RS21775 0.59 -1.4 98,558 - EX31_RS21775 0.59 +0.2 98,558 - EX31_RS21775 0.59 +0.6 98,558 - EX31_RS21775 0.59 +0.3 98,558 - EX31_RS21775 0.59 -0.3 98,558 - EX31_RS21775 0.59 +0.1 98,558 - EX31_RS21775 0.59 +0.2 98,558 - EX31_RS21775 0.59 +0.1 98,558 - EX31_RS21775 0.59 +0.4 98,558 - EX31_RS21775 0.59 +0.2 98,558 - EX31_RS21775 0.59 -0.7 98,558 - EX31_RS21775 0.59 +0.1 98,558 - EX31_RS21775 0.59 +0.9 98,558 - EX31_RS21775 0.59 +0.7 98,561 + EX31_RS21775 0.60 -0.5 98,561 + EX31_RS21775 0.60 +1.1 98,561 + EX31_RS21775 0.60 -0.3 98,561 + EX31_RS21775 0.60 -0.4 98,561 + EX31_RS21775 0.60 -1.0 98,562 - EX31_RS21775 0.60 +0.0 98,562 - EX31_RS21775 0.60 -0.3 98,562 - EX31_RS21775 0.60 +0.5 98,562 - EX31_RS21775 0.60 +0.0 98,638 + EX31_RS21775 0.71 -0.2 98,639 - EX31_RS21775 0.71 +0.0 98,699 + EX31_RS21775 0.80 -0.1 98,699 + EX31_RS21775 0.80 +0.9 98,722 + EX31_RS21775 0.83 -0.6 98,769 - -0.1 98,779 + -0.1 98,779 + -1.1 98,779 + -0.5 98,779 + +0.8 98,780 - -0.7 98,780 - -0.0 98,780 - -1.1 98,780 - -1.0 98,780 - -1.9 98,780 - -0.6 98,780 - -0.6 98,780 - -0.9 98,855 + +0.8 98,877 + -0.1 98,877 + +0.7 98,878 - +0.9 98,926 + +0.7 98,927 - -2.4 98,937 + +0.8 98,937 + +0.3 98,937 + -0.0 98,938 - +1.2 98,938 - -0.2 98,938 - +0.3 99,009 - -0.1 99,015 + -0.1 99,015 + -0.5 99,015 + -0.7 99,015 + +0.8 99,015 + +0.3 99,016 - +0.1 99,016 - -0.6 99,019 + -1.1 99,019 + +1.2 99,019 + -0.3 99,019 + +0.8 99,019 + +0.6 99,019 + -0.3 99,037 + -0.4 99,059 - -1.2 99,090 + +0.5 99,090 + +0.4 99,090 + +0.0 99,090 + +0.0 99,092 + +1.5 99,093 - -1.1 99,093 - -2.5 99,093 - -1.9 99,093 - -1.2 99,093 - -0.5 99,093 - -1.1 99,093 - -1.8 99,093 - -0.2 99,128 + +0.8 99,128 + +1.3 99,128 + -0.2 99,128 + +1.0 99,128 + +1.5 99,129 - -1.0 99,129 - -1.0 99,129 - -0.9 99,129 - -0.1 99,141 + +0.8 99,141 + +1.9 99,142 - -1.2 99,142 - -0.9 99,142 - -2.2 99,147 + +1.1 99,147 + +1.5 99,147 + +1.1 99,152 + +1.5 99,152 + +1.1 99,173 + +0.7 99,173 + +0.9 99,173 + +1.2 99,173 + +0.9 99,173 + +0.5 99,173 + +0.3 99,173 + +1.1 99,173 + +1.2 99,173 + +1.1 99,173 + +0.3 99,174 - -2.3 99,174 - -1.0 99,174 - -2.6 99,174 - -0.3 99,174 - +0.9 99,174 - -2.2 99,174 - +1.4 99,174 - -0.9 99,174 - +1.4 99,174 - -3.1 99,194 + +0.9 99,195 - +0.3 99,195 - -1.4 99,198 - -0.9 99,334 - EX31_RS21780 0.42 -0.9 99,343 + EX31_RS21780 0.44 +2.4 99,343 + EX31_RS21780 0.44 +1.9 99,343 + EX31_RS21780 0.44 +1.7 99,344 - EX31_RS21780 0.44 -2.5 99,367 + EX31_RS21780 0.50 +2.3 99,367 + EX31_RS21780 0.50 +2.2 99,367 + EX31_RS21780 0.50 +1.9 99,367 + EX31_RS21780 0.50 +2.5 99,367 + EX31_RS21780 0.50 +2.0 99,368 - EX31_RS21780 0.51 -2.4 99,368 - EX31_RS21780 0.51 -2.4 99,403 + EX31_RS21780 0.60 +2.0 99,403 + EX31_RS21780 0.60 +1.3 99,403 + EX31_RS21780 0.60 +1.7 99,494 + EX31_RS21780 0.83 +1.9 99,495 - EX31_RS21780 0.84 -2.3 99,495 - EX31_RS21780 0.84 +0.3 99,536 + +1.7 99,537 - +0.4 99,596 + +1.5 99,597 - -1.9 99,598 + +2.0 99,599 - -2.0 99,599 - -1.3 99,652 - -0.2 99,652 - +1.7 99,655 + -1.5 99,727 + +0.4 99,728 - -0.2 99,728 - +0.6 99,803 - EX31_RS21785 0.12 +0.1 99,803 - EX31_RS21785 0.12 +0.3 99,878 - EX31_RS21785 0.17 +0.6 99,883 - EX31_RS21785 0.18 -0.0 99,947 - EX31_RS21785 0.22 -0.4 99,985 - EX31_RS21785 0.25 +0.9 99,985 - EX31_RS21785 0.25 +0.4 99,985 - EX31_RS21785 0.25 -0.2 99,985 - EX31_RS21785 0.25 -1.8 99,985 - EX31_RS21785 0.25 -1.8 99,985 - EX31_RS21785 0.25 +0.4 99,989 - EX31_RS21785 0.26 +0.5 99,989 - EX31_RS21785 0.26 -0.4 99,989 - EX31_RS21785 0.26 -0.2 99,989 - EX31_RS21785 0.26 +1.5 99,989 - EX31_RS21785 0.26 +1.0 100,100 - EX31_RS21785 0.34 -0.2 100,100 - EX31_RS21785 0.34 +0.4 100,100 - EX31_RS21785 0.34 +0.9 100,100 - EX31_RS21785 0.34 +0.7 100,100 - EX31_RS21785 0.34 +1.3 100,100 - EX31_RS21785 0.34 -0.0 100,150 - EX31_RS21785 0.38 +0.5 100,159 + EX31_RS21785 0.38 +1.3 100,160 - EX31_RS21785 0.38 -0.1 100,160 - EX31_RS21785 0.38 -1.8 100,160 - EX31_RS21785 0.38 +0.8 100,160 - EX31_RS21785 0.38 +0.1 100,160 - EX31_RS21785 0.38 -0.2 100,211 - EX31_RS21785 0.42 +0.2 100,277 - EX31_RS21785 0.47 -0.2 100,556 - EX31_RS21785 0.68 +0.2
Or see this region's nucleotide sequence