Strain Fitness in Rahnella sp. WP5 around EX31_RS18790

Experiment: NL-CCM; ambient oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS18780 and EX31_RS18785 are separated by 350 nucleotidesEX31_RS18785 and EX31_RS18790 overlap by 4 nucleotidesEX31_RS18790 and EX31_RS18795 are separated by 27 nucleotidesEX31_RS18795 and EX31_RS18800 are separated by 3 nucleotides EX31_RS18780: EX31_RS18780 - nucleoside-specific channel-forming protein Tsx, at 341,610 to 342,497 _RS18780 EX31_RS18785: EX31_RS18785 - DUF2384 domain-containing protein, at 342,848 to 343,309 _RS18785 EX31_RS18790: EX31_RS18790 - RES domain-containing protein, at 343,306 to 343,764 _RS18790 EX31_RS18795: EX31_RS18795 - DMT family transporter, at 343,792 to 344,244 _RS18795 EX31_RS18800: EX31_RS18800 - DMT family transporter, at 344,248 to 344,682 _RS18800 Position (kb) 343 344Strain fitness (log2 ratio) -2 -1 0 1 2at 342.320 kb on - strand, within EX31_RS18780at 342.329 kb on - strand, within EX31_RS18780at 342.375 kb on + strand, within EX31_RS18780at 342.375 kb on + strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.425 kb on + strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.451 kb on + strandat 342.452 kb on - strandat 342.552 kb on + strandat 342.552 kb on + strandat 342.552 kb on + strandat 342.553 kb on - strandat 342.564 kb on + strandat 342.596 kb on + strandat 342.597 kb on - strandat 342.597 kb on - strandat 342.597 kb on - strandat 342.617 kb on - strandat 342.623 kb on + strandat 342.624 kb on - strandat 342.630 kb on + strandat 342.649 kb on + strandat 342.649 kb on + strandat 342.654 kb on - strandat 342.654 kb on - strandat 342.654 kb on - strandat 342.654 kb on - strandat 342.656 kb on + strandat 342.657 kb on - strandat 342.657 kb on - strandat 342.660 kb on + strandat 342.700 kb on + strandat 342.700 kb on + strandat 342.729 kb on + strandat 342.729 kb on + strandat 342.730 kb on - strandat 342.730 kb on - strandat 342.747 kb on + strandat 342.748 kb on - strandat 342.748 kb on - strandat 342.748 kb on - strandat 342.783 kb on + strandat 342.783 kb on + strandat 342.811 kb on + strandat 342.952 kb on - strand, within EX31_RS18785at 342.982 kb on + strand, within EX31_RS18785at 342.983 kb on - strand, within EX31_RS18785at 342.983 kb on - strand, within EX31_RS18785at 342.985 kb on + strand, within EX31_RS18785at 342.985 kb on + strand, within EX31_RS18785at 342.985 kb on + strand, within EX31_RS18785at 342.986 kb on - strand, within EX31_RS18785at 342.986 kb on - strand, within EX31_RS18785at 342.997 kb on + strand, within EX31_RS18785at 342.998 kb on - strand, within EX31_RS18785at 343.000 kb on + strand, within EX31_RS18785at 343.029 kb on + strand, within EX31_RS18785at 343.061 kb on + strand, within EX31_RS18785at 343.061 kb on + strand, within EX31_RS18785at 343.061 kb on + strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.092 kb on + strand, within EX31_RS18785at 343.092 kb on + strand, within EX31_RS18785at 343.321 kb on - strandat 343.376 kb on - strand, within EX31_RS18790at 343.414 kb on + strand, within EX31_RS18790at 343.414 kb on + strand, within EX31_RS18790at 343.414 kb on + strand, within EX31_RS18790at 343.490 kb on - strand, within EX31_RS18790at 343.491 kb on + strand, within EX31_RS18790at 343.491 kb on + strand, within EX31_RS18790at 343.491 kb on + strand, within EX31_RS18790at 343.492 kb on - strand, within EX31_RS18790at 343.492 kb on - strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.628 kb on - strand, within EX31_RS18790at 343.669 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.677 kb on - strand, within EX31_RS18790at 343.677 kb on - strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.680 kb on - strand, within EX31_RS18790at 343.680 kb on - strand, within EX31_RS18790at 343.680 kb on - strand, within EX31_RS18790at 343.683 kb on + strand, within EX31_RS18790at 343.839 kb on + strand, within EX31_RS18795at 343.839 kb on + strand, within EX31_RS18795at 343.840 kb on - strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.007 kb on - strand, within EX31_RS18795at 344.007 kb on - strand, within EX31_RS18795at 344.007 kb on - strand, within EX31_RS18795at 344.020 kb on + strand, within EX31_RS18795at 344.020 kb on + strand, within EX31_RS18795at 344.104 kb on - strand, within EX31_RS18795at 344.165 kb on - strand, within EX31_RS18795at 344.191 kb on - strand, within EX31_RS18795at 344.221 kb on + strandat 344.222 kb on - strandat 344.222 kb on - strandat 344.224 kb on + strandat 344.224 kb on + strandat 344.225 kb on - strandat 344.225 kb on - strandat 344.225 kb on - strandat 344.346 kb on - strand, within EX31_RS18800at 344.447 kb on + strand, within EX31_RS18800at 344.447 kb on + strand, within EX31_RS18800at 344.447 kb on + strand, within EX31_RS18800at 344.447 kb on + strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.448 kb on - strand, within EX31_RS18800at 344.568 kb on + strand, within EX31_RS18800at 344.568 kb on + strand, within EX31_RS18800at 344.569 kb on - strand, within EX31_RS18800at 344.718 kb on + strandat 344.718 kb on + strandat 344.720 kb on + strandat 344.720 kb on + strandat 344.720 kb on + strandat 344.720 kb on + strandat 344.721 kb on - strandat 344.721 kb on - strandat 344.762 kb on + strandat 344.763 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
remove
342,320 - EX31_RS18780 0.80 +0.6
342,329 - EX31_RS18780 0.81 -0.3
342,375 + EX31_RS18780 0.86 -0.1
342,375 + EX31_RS18780 0.86 -0.5
342,376 - EX31_RS18780 0.86 +0.9
342,376 - EX31_RS18780 0.86 +0.3
342,376 - EX31_RS18780 0.86 -1.0
342,376 - EX31_RS18780 0.86 +0.7
342,376 - EX31_RS18780 0.86 +0.2
342,376 - EX31_RS18780 0.86 +0.2
342,376 - EX31_RS18780 0.86 +0.3
342,425 + -0.6
342,426 - -0.7
342,426 - -0.3
342,426 - -1.1
342,451 + -0.8
342,452 - +0.2
342,552 + -0.6
342,552 + -0.8
342,552 + +0.6
342,553 - +0.0
342,564 + -0.5
342,596 + -0.1
342,597 - +0.2
342,597 - -0.3
342,597 - -0.7
342,617 - +0.5
342,623 + +0.1
342,624 - +0.5
342,630 + -1.0
342,649 + +0.6
342,649 + +0.2
342,654 - -2.7
342,654 - +0.4
342,654 - -0.0
342,654 - -0.2
342,656 + +0.7
342,657 - +0.5
342,657 - -0.0
342,660 + -0.4
342,700 + -1.0
342,700 + -0.7
342,729 + -0.6
342,729 + +0.6
342,730 - +0.4
342,730 - +0.5
342,747 + -0.5
342,748 - -0.9
342,748 - -1.2
342,748 - +1.2
342,783 + -0.3
342,783 + +0.7
342,811 + -0.0
342,952 - EX31_RS18785 0.23 -1.2
342,982 + EX31_RS18785 0.29 +1.6
342,983 - EX31_RS18785 0.29 -1.0
342,983 - EX31_RS18785 0.29 +0.5
342,985 + EX31_RS18785 0.30 +0.2
342,985 + EX31_RS18785 0.30 +0.3
342,985 + EX31_RS18785 0.30 +2.1
342,986 - EX31_RS18785 0.30 +0.1
342,986 - EX31_RS18785 0.30 -0.3
342,997 + EX31_RS18785 0.32 +1.8
342,998 - EX31_RS18785 0.32 -0.7
343,000 + EX31_RS18785 0.33 -0.1
343,029 + EX31_RS18785 0.39 +1.7
343,061 + EX31_RS18785 0.46 +1.0
343,061 + EX31_RS18785 0.46 +1.0
343,061 + EX31_RS18785 0.46 +1.2
343,062 - EX31_RS18785 0.46 -0.9
343,062 - EX31_RS18785 0.46 +0.5
343,062 - EX31_RS18785 0.46 -1.5
343,062 - EX31_RS18785 0.46 -0.7
343,062 - EX31_RS18785 0.46 -0.2
343,062 - EX31_RS18785 0.46 -1.5
343,062 - EX31_RS18785 0.46 -1.3
343,092 + EX31_RS18785 0.53 +0.3
343,092 + EX31_RS18785 0.53 +0.8
343,321 - -0.8
343,376 - EX31_RS18790 0.15 +1.4
343,414 + EX31_RS18790 0.24 -0.1
343,414 + EX31_RS18790 0.24 +1.6
343,414 + EX31_RS18790 0.24 +0.3
343,490 - EX31_RS18790 0.40 -1.5
343,491 + EX31_RS18790 0.40 +1.4
343,491 + EX31_RS18790 0.40 +0.6
343,491 + EX31_RS18790 0.40 +0.2
343,492 - EX31_RS18790 0.41 +0.4
343,492 - EX31_RS18790 0.41 -0.7
343,627 + EX31_RS18790 0.70 +0.3
343,627 + EX31_RS18790 0.70 +0.8
343,627 + EX31_RS18790 0.70 +0.1
343,627 + EX31_RS18790 0.70 +1.7
343,628 - EX31_RS18790 0.70 -0.7
343,669 + EX31_RS18790 0.79 +0.1
343,676 + EX31_RS18790 0.81 -0.7
343,676 + EX31_RS18790 0.81 -0.2
343,676 + EX31_RS18790 0.81 +0.6
343,676 + EX31_RS18790 0.81 +1.0
343,676 + EX31_RS18790 0.81 +0.4
343,676 + EX31_RS18790 0.81 +0.9
343,676 + EX31_RS18790 0.81 +0.0
343,676 + EX31_RS18790 0.81 +0.4
343,677 - EX31_RS18790 0.81 -1.9
343,677 - EX31_RS18790 0.81 +1.0
343,679 + EX31_RS18790 0.81 -0.4
343,679 + EX31_RS18790 0.81 +0.5
343,679 + EX31_RS18790 0.81 +0.4
343,679 + EX31_RS18790 0.81 +0.5
343,679 + EX31_RS18790 0.81 -1.0
343,679 + EX31_RS18790 0.81 +0.3
343,679 + EX31_RS18790 0.81 +0.1
343,680 - EX31_RS18790 0.81 -2.2
343,680 - EX31_RS18790 0.81 -2.1
343,680 - EX31_RS18790 0.81 -0.5
343,683 + EX31_RS18790 0.82 -0.1
343,839 + EX31_RS18795 0.10 +0.4
343,839 + EX31_RS18795 0.10 -0.1
343,840 - EX31_RS18795 0.11 +0.2
344,006 + EX31_RS18795 0.47 +0.1
344,006 + EX31_RS18795 0.47 -0.9
344,006 + EX31_RS18795 0.47 +0.3
344,006 + EX31_RS18795 0.47 +0.1
344,006 + EX31_RS18795 0.47 -0.2
344,007 - EX31_RS18795 0.47 -0.8
344,007 - EX31_RS18795 0.47 +0.0
344,007 - EX31_RS18795 0.47 -1.0
344,020 + EX31_RS18795 0.50 +0.3
344,020 + EX31_RS18795 0.50 -1.0
344,104 - EX31_RS18795 0.69 +0.3
344,165 - EX31_RS18795 0.82 +0.1
344,191 - EX31_RS18795 0.88 -1.3
344,221 + +0.1
344,222 - +1.3
344,222 - -1.0
344,224 + -1.1
344,224 + -0.4
344,225 - +0.9
344,225 - +0.2
344,225 - -0.0
344,346 - EX31_RS18800 0.23 +0.2
344,447 + EX31_RS18800 0.46 +1.8
344,447 + EX31_RS18800 0.46 +0.4
344,447 + EX31_RS18800 0.46 -1.8
344,447 + EX31_RS18800 0.46 -0.0
344,448 - EX31_RS18800 0.46 -1.3
344,448 - EX31_RS18800 0.46 +0.1
344,448 - EX31_RS18800 0.46 -0.1
344,448 - EX31_RS18800 0.46 -0.4
344,448 - EX31_RS18800 0.46 +0.1
344,448 - EX31_RS18800 0.46 -0.1
344,448 - EX31_RS18800 0.46 +0.3
344,568 + EX31_RS18800 0.74 +0.6
344,568 + EX31_RS18800 0.74 +0.4
344,569 - EX31_RS18800 0.74 +0.1
344,718 + -0.2
344,718 + +0.5
344,720 + -0.1
344,720 + -0.9
344,720 + -0.5
344,720 + +0.2
344,721 - -0.3
344,721 - +0.1
344,762 + -0.3
344,763 - -0.1

Or see this region's nucleotide sequence