Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS25450 and EX31_RS16395 are separated by 331 nucleotides EX31_RS16395 and EX31_RS16400 overlap by 53 nucleotides
EX31_RS25450: EX31_RS25450 - helix-turn-helix domain-containing protein, at 29,206 to 29,451
_RS25450
EX31_RS16395: EX31_RS16395 - MFS transporter, at 29,783 to 31,048
_RS16395
EX31_RS16400: EX31_RS16400 - L-tyrosine/L-tryptophan isonitrile synthase family protein, at 30,996 to 32,744
_RS16400
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 28.861 kb on - strand at 28.861 kb on - strand at 28.882 kb on + strand at 28.882 kb on + strand at 28.893 kb on - strand at 28.919 kb on + strand at 28.954 kb on + strand at 28.954 kb on + strand at 28.954 kb on + strand at 28.954 kb on + strand at 28.955 kb on - strand at 28.955 kb on - strand at 28.955 kb on - strand at 28.956 kb on + strand at 28.956 kb on + strand at 28.956 kb on + strand at 28.956 kb on + strand at 28.956 kb on + strand at 28.956 kb on + strand at 28.956 kb on + strand at 28.956 kb on + strand at 28.956 kb on + strand at 28.956 kb on + strand at 28.956 kb on + strand at 28.957 kb on - strand at 28.957 kb on - strand at 28.957 kb on - strand at 28.957 kb on - strand at 28.957 kb on - strand at 28.957 kb on - strand at 28.957 kb on - strand at 28.957 kb on - strand at 28.957 kb on - strand at 28.957 kb on - strand at 28.957 kb on - strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.960 kb on + strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.961 kb on - strand at 28.962 kb on + strand at 28.962 kb on + strand at 28.962 kb on + strand at 28.962 kb on + strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.963 kb on - strand at 28.969 kb on + strand at 28.970 kb on - strand at 28.972 kb on + strand at 28.972 kb on + strand at 29.022 kb on - strand at 29.022 kb on - strand at 29.025 kb on - strand at 29.025 kb on - strand at 29.036 kb on + strand at 29.036 kb on + strand at 29.098 kb on + strand at 29.099 kb on - strand at 29.108 kb on - strand at 29.144 kb on + strand at 29.144 kb on + strand at 29.200 kb on + strand at 29.200 kb on + strand at 29.200 kb on + strand at 29.200 kb on + strand at 29.201 kb on - strand at 29.323 kb on + strand, within EX31_RS25450 at 29.323 kb on + strand, within EX31_RS25450 at 29.323 kb on + strand, within EX31_RS25450 at 29.323 kb on + strand, within EX31_RS25450 at 29.323 kb on + strand, within EX31_RS25450 at 29.324 kb on - strand, within EX31_RS25450 at 29.324 kb on - strand, within EX31_RS25450 at 29.379 kb on + strand, within EX31_RS25450 at 29.380 kb on - strand, within EX31_RS25450 at 29.392 kb on - strand, within EX31_RS25450 at 29.440 kb on + strand at 29.440 kb on + strand at 29.441 kb on - strand at 29.532 kb on + strand at 29.552 kb on + strand at 29.568 kb on + strand at 29.568 kb on + strand at 29.573 kb on + strand at 29.573 kb on + strand at 29.574 kb on - strand at 29.574 kb on - strand at 29.600 kb on - strand at 29.600 kb on - strand at 29.604 kb on - strand at 29.648 kb on - strand at 29.712 kb on - strand at 29.741 kb on + strand at 29.818 kb on + strand at 29.867 kb on + strand at 29.867 kb on + strand at 29.942 kb on - strand, within EX31_RS16395 at 29.945 kb on + strand, within EX31_RS16395 at 29.991 kb on + strand, within EX31_RS16395 at 29.991 kb on + strand, within EX31_RS16395 at 29.992 kb on - strand, within EX31_RS16395 at 30.008 kb on + strand, within EX31_RS16395 at 30.009 kb on - strand, within EX31_RS16395 at 30.066 kb on + strand, within EX31_RS16395 at 30.066 kb on + strand, within EX31_RS16395 at 30.067 kb on - strand, within EX31_RS16395 at 30.067 kb on - strand, within EX31_RS16395 at 30.067 kb on - strand, within EX31_RS16395 at 30.114 kb on - strand, within EX31_RS16395 at 30.164 kb on - strand, within EX31_RS16395 at 30.195 kb on + strand, within EX31_RS16395 at 30.195 kb on + strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.196 kb on - strand, within EX31_RS16395 at 30.199 kb on + strand, within EX31_RS16395 at 30.200 kb on - strand, within EX31_RS16395 at 30.200 kb on - strand, within EX31_RS16395 at 30.200 kb on - strand, within EX31_RS16395 at 30.203 kb on + strand, within EX31_RS16395 at 30.204 kb on - strand, within EX31_RS16395 at 30.204 kb on - strand, within EX31_RS16395 at 30.206 kb on + strand, within EX31_RS16395 at 30.286 kb on + strand, within EX31_RS16395 at 30.291 kb on - strand, within EX31_RS16395 at 30.291 kb on - strand, within EX31_RS16395 at 30.320 kb on + strand, within EX31_RS16395 at 30.333 kb on - strand, within EX31_RS16395 at 30.333 kb on - strand, within EX31_RS16395 at 30.385 kb on + strand, within EX31_RS16395 at 30.411 kb on + strand, within EX31_RS16395 at 30.474 kb on + strand, within EX31_RS16395 at 30.536 kb on + strand, within EX31_RS16395 at 30.536 kb on + strand, within EX31_RS16395 at 30.536 kb on + strand, within EX31_RS16395 at 30.536 kb on + strand, within EX31_RS16395 at 30.537 kb on - strand, within EX31_RS16395 at 30.537 kb on - strand, within EX31_RS16395 at 30.621 kb on - strand, within EX31_RS16395 at 30.650 kb on + strand, within EX31_RS16395 at 30.650 kb on + strand, within EX31_RS16395 at 30.651 kb on - strand, within EX31_RS16395 at 30.651 kb on - strand, within EX31_RS16395 at 30.651 kb on - strand, within EX31_RS16395 at 30.651 kb on - strand, within EX31_RS16395 at 30.651 kb on - strand, within EX31_RS16395 at 30.660 kb on - strand, within EX31_RS16395 at 30.677 kb on + strand, within EX31_RS16395 at 30.680 kb on + strand, within EX31_RS16395 at 30.681 kb on - strand, within EX31_RS16395 at 30.699 kb on + strand, within EX31_RS16395 at 30.701 kb on + strand, within EX31_RS16395 at 30.701 kb on + strand, within EX31_RS16395 at 30.703 kb on + strand, within EX31_RS16395 at 30.704 kb on - strand, within EX31_RS16395 at 30.708 kb on - strand, within EX31_RS16395 at 30.754 kb on + strand, within EX31_RS16395 at 30.812 kb on - strand, within EX31_RS16395 at 30.830 kb on + strand, within EX31_RS16395 at 30.831 kb on - strand, within EX31_RS16395 at 30.852 kb on - strand, within EX31_RS16395 at 30.861 kb on + strand, within EX31_RS16395 at 30.873 kb on + strand, within EX31_RS16395 at 30.923 kb on - strand at 30.923 kb on - strand at 30.933 kb on + strand at 30.966 kb on + strand at 30.966 kb on + strand at 30.966 kb on + strand at 30.967 kb on - strand at 30.967 kb on - strand at 30.967 kb on - strand at 30.967 kb on - strand at 31.018 kb on - strand at 31.018 kb on - strand at 31.022 kb on + strand at 31.022 kb on + strand at 31.023 kb on - strand at 31.108 kb on + strand at 31.108 kb on + strand at 31.109 kb on - strand at 31.134 kb on + strand at 31.194 kb on + strand, within EX31_RS16400 at 31.216 kb on - strand, within EX31_RS16400 at 31.338 kb on + strand, within EX31_RS16400 at 31.396 kb on + strand, within EX31_RS16400 at 31.426 kb on - strand, within EX31_RS16400 at 31.441 kb on - strand, within EX31_RS16400 at 31.495 kb on - strand, within EX31_RS16400 at 31.496 kb on + strand, within EX31_RS16400 at 31.548 kb on - strand, within EX31_RS16400 at 31.611 kb on + strand, within EX31_RS16400 at 31.713 kb on + strand, within EX31_RS16400 at 31.828 kb on - strand, within EX31_RS16400 at 31.887 kb on + strand, within EX31_RS16400 at 31.887 kb on + strand, within EX31_RS16400
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 28,861 - +2.2 28,861 - -0.2 28,882 + +1.8 28,882 + -1.7 28,893 - -0.1 28,919 + -1.2 28,954 + -0.2 28,954 + -0.2 28,954 + +0.3 28,954 + -0.3 28,955 - -0.8 28,955 - +0.4 28,955 - -0.4 28,956 + -0.1 28,956 + -0.3 28,956 + -0.4 28,956 + +1.2 28,956 + -1.0 28,956 + -1.4 28,956 + +0.2 28,956 + -0.1 28,956 + -0.4 28,956 + -0.7 28,956 + +0.3 28,957 - -0.9 28,957 - +0.0 28,957 - +1.4 28,957 - +0.9 28,957 - +0.6 28,957 - +0.1 28,957 - +0.3 28,957 - +0.1 28,957 - +0.9 28,957 - -0.1 28,957 - +0.6 28,960 + +0.1 28,960 + +0.3 28,960 + -0.8 28,960 + +0.5 28,960 + -0.2 28,960 + -0.1 28,960 + +0.1 28,960 + +0.3 28,960 + +0.2 28,960 + -0.1 28,960 + +1.3 28,960 + -2.7 28,960 + +0.2 28,960 + +0.8 28,960 + -0.7 28,960 + -0.7 28,960 + -0.4 28,960 + -0.4 28,960 + +0.5 28,960 + -0.4 28,960 + -2.0 28,960 + -0.8 28,960 + -1.4 28,960 + -0.9 28,960 + +0.2 28,960 + +0.1 28,960 + -0.5 28,960 + +0.6 28,960 + -0.5 28,960 + -1.2 28,960 + -0.3 28,961 - +0.5 28,961 - -1.7 28,961 - -0.5 28,961 - +0.5 28,961 - +0.5 28,961 - -0.3 28,961 - +0.3 28,961 - -0.2 28,961 - +0.4 28,961 - +0.0 28,961 - +0.1 28,961 - +0.6 28,961 - +0.7 28,961 - -0.5 28,961 - -0.2 28,961 - -0.3 28,961 - -0.5 28,961 - +0.2 28,961 - +0.4 28,961 - +0.3 28,961 - -0.7 28,961 - -0.4 28,961 - -1.3 28,961 - +0.0 28,961 - +0.3 28,961 - -1.0 28,961 - +0.9 28,961 - +0.2 28,961 - -0.0 28,961 - +1.6 28,961 - +0.3 28,962 + -0.7 28,962 + -0.9 28,962 + -0.7 28,962 + -0.3 28,963 - +0.4 28,963 - +0.9 28,963 - -0.1 28,963 - -1.0 28,963 - -0.6 28,963 - -0.3 28,963 - -1.0 28,963 - +0.2 28,963 - +0.1 28,963 - -0.3 28,963 - +0.1 28,963 - -0.4 28,963 - -0.1 28,969 + -0.2 28,970 - -0.7 28,972 + -0.5 28,972 + +0.2 29,022 - +0.9 29,022 - +0.5 29,025 - -2.8 29,025 - -0.4 29,036 + -0.2 29,036 + +0.0 29,098 + +0.1 29,099 - -0.0 29,108 - +0.3 29,144 + -0.9 29,144 + -0.3 29,200 + +0.5 29,200 + -0.6 29,200 + +1.1 29,200 + -0.6 29,201 - +0.5 29,323 + EX31_RS25450 0.48 +0.3 29,323 + EX31_RS25450 0.48 +0.1 29,323 + EX31_RS25450 0.48 -0.9 29,323 + EX31_RS25450 0.48 +0.3 29,323 + EX31_RS25450 0.48 +0.3 29,324 - EX31_RS25450 0.48 +1.3 29,324 - EX31_RS25450 0.48 +0.0 29,379 + EX31_RS25450 0.70 +0.2 29,380 - EX31_RS25450 0.71 +0.4 29,392 - EX31_RS25450 0.76 -0.2 29,440 + +0.1 29,440 + +0.2 29,441 - -1.0 29,532 + -2.7 29,552 + -0.8 29,568 + -0.3 29,568 + -1.4 29,573 + -1.1 29,573 + -1.4 29,574 - -0.2 29,574 - +0.3 29,600 - -0.5 29,600 - -0.3 29,604 - -0.9 29,648 - +0.5 29,712 - +0.7 29,741 + +0.3 29,818 + -0.5 29,867 + +0.1 29,867 + -1.3 29,942 - EX31_RS16395 0.13 -0.5 29,945 + EX31_RS16395 0.13 +0.3 29,991 + EX31_RS16395 0.16 -1.3 29,991 + EX31_RS16395 0.16 +0.0 29,992 - EX31_RS16395 0.17 +0.4 30,008 + EX31_RS16395 0.18 -0.6 30,009 - EX31_RS16395 0.18 -0.4 30,066 + EX31_RS16395 0.22 -0.4 30,066 + EX31_RS16395 0.22 +0.1 30,067 - EX31_RS16395 0.22 -1.6 30,067 - EX31_RS16395 0.22 -0.3 30,067 - EX31_RS16395 0.22 +0.2 30,114 - EX31_RS16395 0.26 +0.6 30,164 - EX31_RS16395 0.30 -2.4 30,195 + EX31_RS16395 0.33 -0.4 30,195 + EX31_RS16395 0.33 -0.7 30,196 - EX31_RS16395 0.33 -0.3 30,196 - EX31_RS16395 0.33 -1.6 30,196 - EX31_RS16395 0.33 -1.1 30,196 - EX31_RS16395 0.33 -1.2 30,196 - EX31_RS16395 0.33 -0.5 30,196 - EX31_RS16395 0.33 -0.5 30,196 - EX31_RS16395 0.33 -0.3 30,199 + EX31_RS16395 0.33 -0.6 30,200 - EX31_RS16395 0.33 -0.3 30,200 - EX31_RS16395 0.33 -0.4 30,200 - EX31_RS16395 0.33 +1.7 30,203 + EX31_RS16395 0.33 -1.4 30,204 - EX31_RS16395 0.33 -1.6 30,204 - EX31_RS16395 0.33 +0.1 30,206 + EX31_RS16395 0.33 -1.5 30,286 + EX31_RS16395 0.40 +0.1 30,291 - EX31_RS16395 0.40 -1.1 30,291 - EX31_RS16395 0.40 +0.1 30,320 + EX31_RS16395 0.42 -0.4 30,333 - EX31_RS16395 0.43 -1.8 30,333 - EX31_RS16395 0.43 -0.2 30,385 + EX31_RS16395 0.48 -0.6 30,411 + EX31_RS16395 0.50 -0.6 30,474 + EX31_RS16395 0.55 -0.1 30,536 + EX31_RS16395 0.59 +0.7 30,536 + EX31_RS16395 0.59 -0.2 30,536 + EX31_RS16395 0.59 -1.1 30,536 + EX31_RS16395 0.59 -1.4 30,537 - EX31_RS16395 0.60 -1.5 30,537 - EX31_RS16395 0.60 +1.0 30,621 - EX31_RS16395 0.66 -1.5 30,650 + EX31_RS16395 0.68 -0.9 30,650 + EX31_RS16395 0.68 -0.1 30,651 - EX31_RS16395 0.69 -0.1 30,651 - EX31_RS16395 0.69 -0.6 30,651 - EX31_RS16395 0.69 -1.2 30,651 - EX31_RS16395 0.69 -1.1 30,651 - EX31_RS16395 0.69 +0.6 30,660 - EX31_RS16395 0.69 -1.7 30,677 + EX31_RS16395 0.71 -0.2 30,680 + EX31_RS16395 0.71 -0.4 30,681 - EX31_RS16395 0.71 -0.9 30,699 + EX31_RS16395 0.72 -1.9 30,701 + EX31_RS16395 0.73 -1.8 30,701 + EX31_RS16395 0.73 -0.0 30,703 + EX31_RS16395 0.73 -0.3 30,704 - EX31_RS16395 0.73 -0.1 30,708 - EX31_RS16395 0.73 -0.3 30,754 + EX31_RS16395 0.77 +0.2 30,812 - EX31_RS16395 0.81 +1.1 30,830 + EX31_RS16395 0.83 -0.4 30,831 - EX31_RS16395 0.83 -1.0 30,852 - EX31_RS16395 0.84 -0.7 30,861 + EX31_RS16395 0.85 -0.9 30,873 + EX31_RS16395 0.86 +0.1 30,923 - -0.9 30,923 - -0.4 30,933 + -0.4 30,966 + -0.8 30,966 + -0.2 30,966 + -0.7 30,967 - -1.3 30,967 - -0.7 30,967 - -0.6 30,967 - -0.3 31,018 - -1.4 31,018 - +0.6 31,022 + -0.0 31,022 + -0.9 31,023 - -0.1 31,108 + +0.7 31,108 + +0.4 31,109 - +0.1 31,134 + -0.8 31,194 + EX31_RS16400 0.11 -0.8 31,216 - EX31_RS16400 0.13 -1.1 31,338 + EX31_RS16400 0.20 -0.5 31,396 + EX31_RS16400 0.23 +1.0 31,426 - EX31_RS16400 0.25 +1.4 31,441 - EX31_RS16400 0.25 -0.5 31,495 - EX31_RS16400 0.29 +0.1 31,496 + EX31_RS16400 0.29 -0.2 31,548 - EX31_RS16400 0.32 +0.9 31,611 + EX31_RS16400 0.35 -0.2 31,713 + EX31_RS16400 0.41 -1.3 31,828 - EX31_RS16400 0.48 -0.6 31,887 + EX31_RS16400 0.51 -0.7 31,887 + EX31_RS16400 0.51 -1.3
Or see this region's nucleotide sequence