Strain Fitness in Rahnella sp. WP5 around EX31_RS16260

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
1,980	+		EX31_RS16245	0.57	+0.3
1,980	+		EX31_RS16245	0.57	-0.4
1,980	+		EX31_RS16245	0.57	-0.9
1,980	+		EX31_RS16245	0.57	-0.5
1,980	+		EX31_RS16245	0.57	+0.0
1,980	+		EX31_RS16245	0.57	-0.3
1,980	+		EX31_RS16245	0.57	+1.3
1,980	+		EX31_RS16245	0.57	+0.9
1,980	+		EX31_RS16245	0.57	+0.0
1,981	-		EX31_RS16245	0.57	-0.3
1,981	-		EX31_RS16245	0.57	-0.7
1,981	-		EX31_RS16245	0.57	-0.7
1,981	-		EX31_RS16245	0.57	+0.1
1,981	-		EX31_RS16245	0.57	-0.2
1,981	-		EX31_RS16245	0.57	-0.1
1,981	-		EX31_RS16245	0.57	-0.6
2,052	+		EX31_RS16245	0.80	-0.0
2,053	-		EX31_RS16245	0.81	-0.6
2,053	-		EX31_RS16245	0.81	-2.8
2,053	-		EX31_RS16245	0.81	+0.3
2,066	+		EX31_RS16245	0.85	+0.3
2,066	+		EX31_RS16245	0.85	+0.8
2,066	+		EX31_RS16245	0.85	+0.3
2,066	+		EX31_RS16245	0.85	+0.2
2,066	+		EX31_RS16245	0.85	+0.1
2,066	+		EX31_RS16245	0.85	-0.3
2,067	-		EX31_RS16245	0.85	-0.4
2,067	-		EX31_RS16245	0.85	+0.4
2,070	+		EX31_RS16245	0.86	-0.1
2,070	+		EX31_RS16245	0.86	+0.3
2,070	+		EX31_RS16245	0.86	-0.1
2,070	+		EX31_RS16245	0.86	-0.4
2,070	+		EX31_RS16245	0.86	-0.0
2,070	+		EX31_RS16245	0.86	+1.0
2,071	-		EX31_RS16245	0.87	+0.6
2,071	-		EX31_RS16245	0.87	-1.7
2,071	-		EX31_RS16245	0.87	-0.6
2,071	-		EX31_RS16245	0.87	+0.2
2,071	-		EX31_RS16245	0.87	+0.2
2,071	-		EX31_RS16245	0.87	-0.8
2,071	-		EX31_RS16245	0.87	-2.1
2,153	+				+0.7
2,153	+				-0.1
2,153	+				-0.2
2,153	+				+0.5
2,153	+				+1.0
2,154	-		EX31_RS16250	0.10	-0.3
2,154	-		EX31_RS16250	0.10	-1.9
2,154	-		EX31_RS16250	0.10	+0.9
2,156	+		EX31_RS16250	0.10	+0.1
2,303	-		EX31_RS16250	0.42	-0.5
2,337	-		EX31_RS16250	0.50	-0.7
2,351	+		EX31_RS16250	0.53	+0.3
2,351	+		EX31_RS16250	0.53	+0.1
2,351	+		EX31_RS16250	0.53	+0.7
2,351	+		EX31_RS16250	0.53	-1.6
2,351	+		EX31_RS16250	0.53	+0.4
2,352	-		EX31_RS16250	0.53	-0.3
2,352	-		EX31_RS16250	0.53	-0.5
2,352	-		EX31_RS16250	0.53	+0.7
2,355	+		EX31_RS16250	0.54	-0.3
2,355	+		EX31_RS16250	0.54	-0.0
2,355	+		EX31_RS16250	0.54	+0.3
2,355	+		EX31_RS16250	0.54	+0.6
2,355	+		EX31_RS16250	0.54	+0.6
2,356	-		EX31_RS16250	0.54	-0.4
2,356	-		EX31_RS16250	0.54	+0.1
2,356	-		EX31_RS16250	0.54	+1.0
2,356	-		EX31_RS16250	0.54	-0.1
2,382	+		EX31_RS16250	0.60	-0.3
2,383	-		EX31_RS16250	0.60	-1.0
2,383	-		EX31_RS16250	0.60	+0.7
2,403	-		EX31_RS16250	0.64	+0.8
2,417	+		EX31_RS16250	0.67	+0.3
2,417	+		EX31_RS16250	0.67	-0.7
2,417	+		EX31_RS16250	0.67	+0.7
2,521	+				-2.4
2,522	-				-1.0
2,523	+				+1.4
2,523	+				-1.0
2,523	+				+0.8
2,524	-				+1.3
2,524	-				-0.1
2,565	-				+0.6
2,565	-				-0.7
2,580	+				-0.6
2,596	-				+0.1
2,611	+				-0.1
2,627	-				-0.7
2,681	+				-0.3
2,681	+				-0.0
2,681	+				+0.8
2,782	+		EX31_RS16255	0.41	+0.5
2,782	+		EX31_RS16255	0.41	-0.1
2,782	+		EX31_RS16255	0.41	-0.2
2,782	+		EX31_RS16255	0.41	-0.4
2,782	+		EX31_RS16255	0.41	+0.1
2,782	+		EX31_RS16255	0.41	-0.2
2,783	-		EX31_RS16255	0.41	-0.6
2,783	-		EX31_RS16255	0.41	-0.1
2,830	+		EX31_RS16255	0.57	-1.5
2,830	+		EX31_RS16255	0.57	-1.5
2,830	+		EX31_RS16255	0.57	+0.1
2,831	-		EX31_RS16255	0.57	-0.0
2,840	+		EX31_RS16255	0.60	-0.6
2,840	+		EX31_RS16255	0.60	+0.1
2,840	+		EX31_RS16255	0.60	-0.8
2,840	+		EX31_RS16255	0.60	+1.2
2,840	+		EX31_RS16255	0.60	-1.2
2,840	+		EX31_RS16255	0.60	+0.3
2,840	+		EX31_RS16255	0.60	+0.3
2,840	+		EX31_RS16255	0.60	-0.0
2,840	+		EX31_RS16255	0.60	+0.7
2,840	+		EX31_RS16255	0.60	-0.7
2,840	+		EX31_RS16255	0.60	+0.9
2,840	+		EX31_RS16255	0.60	-0.8
2,840	+		EX31_RS16255	0.60	-0.4
2,840	+		EX31_RS16255	0.60	-0.3
2,840	+		EX31_RS16255	0.60	+0.1
2,840	+		EX31_RS16255	0.60	+0.5
2,840	+		EX31_RS16255	0.60	+0.3
2,840	+		EX31_RS16255	0.60	-0.1
2,841	-		EX31_RS16255	0.61	-0.5
2,841	-		EX31_RS16255	0.61	-1.6
2,841	-		EX31_RS16255	0.61	+1.5
2,841	-		EX31_RS16255	0.61	-0.6
2,842	+		EX31_RS16255	0.61	+0.4
2,842	+		EX31_RS16255	0.61	+0.1
2,851	+		EX31_RS16255	0.64	-0.8
2,851	+		EX31_RS16255	0.64	+0.1
2,851	+		EX31_RS16255	0.64	-1.0
2,851	+		EX31_RS16255	0.64	+0.1
2,851	+		EX31_RS16255	0.64	+0.5
2,851	+		EX31_RS16255	0.64	-0.0
2,851	+		EX31_RS16255	0.64	+0.1
2,851	+		EX31_RS16255	0.64	-0.7
2,852	-		EX31_RS16255	0.65	-0.7
2,852	-		EX31_RS16255	0.65	+0.5
2,852	-		EX31_RS16255	0.65	-0.4
2,868	+		EX31_RS16255	0.70	-1.3
2,868	+		EX31_RS16255	0.70	+0.9
2,868	+		EX31_RS16255	0.70	+0.0
2,868	+		EX31_RS16255	0.70	+1.5
2,868	+		EX31_RS16255	0.70	+0.2
2,868	+		EX31_RS16255	0.70	-0.5
2,868	+		EX31_RS16255	0.70	-0.4
2,868	+		EX31_RS16255	0.70	+0.0
2,898	+		EX31_RS16255	0.80	-0.2
2,898	+		EX31_RS16255	0.80	+0.0
2,898	+		EX31_RS16255	0.80	-0.4
2,898	+		EX31_RS16255	0.80	+0.0
2,898	+		EX31_RS16255	0.80	-0.4
2,898	+		EX31_RS16255	0.80	-0.3
2,898	+		EX31_RS16255	0.80	+0.2
2,898	+		EX31_RS16255	0.80	+0.5
2,898	+		EX31_RS16255	0.80	-1.1
2,898	+		EX31_RS16255	0.80	-0.6
2,898	+		EX31_RS16255	0.80	-0.7
2,898	+		EX31_RS16255	0.80	+0.0
2,898	+		EX31_RS16255	0.80	-0.1
2,898	+		EX31_RS16255	0.80	+0.8
2,898	+		EX31_RS16255	0.80	-0.3
2,898	+		EX31_RS16255	0.80	+0.2
2,898	+		EX31_RS16255	0.80	-0.4
2,898	+		EX31_RS16255	0.80	-0.1
2,898	+		EX31_RS16255	0.80	-0.3
2,898	+		EX31_RS16255	0.80	+0.9
2,898	+		EX31_RS16255	0.80	+0.2
2,898	+		EX31_RS16255	0.80	+0.8
2,898	+		EX31_RS16255	0.80	+0.2
2,898	+		EX31_RS16255	0.80	+0.2
2,898	+		EX31_RS16255	0.80	+0.1
2,898	+		EX31_RS16255	0.80	+0.4
2,898	+		EX31_RS16255	0.80	+0.5
2,898	+		EX31_RS16255	0.80	-1.7
2,898	+		EX31_RS16255	0.80	-0.9
2,898	+		EX31_RS16255	0.80	-0.1
2,898	+		EX31_RS16255	0.80	-1.0
2,898	+		EX31_RS16255	0.80	-1.6
2,898	+		EX31_RS16255	0.80	+0.5
2,899	-		EX31_RS16255	0.80	-2.1
2,899	-		EX31_RS16255	0.80	-2.6
2,899	-		EX31_RS16255	0.80	-1.9
2,899	-		EX31_RS16255	0.80	-0.1
2,899	-		EX31_RS16255	0.80	-0.3
2,899	-		EX31_RS16255	0.80	+1.7
2,899	-		EX31_RS16255	0.80	-1.0
2,899	-		EX31_RS16255	0.80	-2.0
2,900	+		EX31_RS16255	0.81	-0.2
2,900	+		EX31_RS16255	0.81	+0.0
2,900	+		EX31_RS16255	0.81	-1.5
2,900	+		EX31_RS16255	0.81	+0.9
2,900	+		EX31_RS16255	0.81	-0.1
2,900	+		EX31_RS16255	0.81	+0.2
2,901	-		EX31_RS16255	0.81	+0.7
2,904	+		EX31_RS16255	0.82	+0.6
2,904	+		EX31_RS16255	0.82	-0.4
2,905	-		EX31_RS16255	0.82	+0.1
2,910	+		EX31_RS16255	0.84	-1.1
2,954	+				+1.2
2,954	+				+0.7
2,954	+				+0.6
2,954	+				+0.8
2,954	+				-0.1
2,954	+				+0.1
2,954	+				+1.1
2,954	+				+0.1
2,954	+				+0.7
2,954	+				+1.1
2,954	+				+1.5
2,955	-				-0.6
2,958	-				+0.2
3,015	+		EX31_RS16260	0.14	+0.6
3,015	+		EX31_RS16260	0.14	+1.1
3,016	-		EX31_RS16260	0.14	-0.0
3,104	+		EX31_RS16260	0.36	+1.1
3,104	+		EX31_RS16260	0.36	+1.2
3,104	+		EX31_RS16260	0.36	+1.1
3,104	+		EX31_RS16260	0.36	+1.0
3,111	+		EX31_RS16260	0.38	+0.3
3,111	+		EX31_RS16260	0.38	+1.8
3,111	+		EX31_RS16260	0.38	+1.2
3,111	+		EX31_RS16260	0.38	+0.8
3,111	+		EX31_RS16260	0.38	+1.1
3,111	+		EX31_RS16260	0.38	+1.4
3,111	+		EX31_RS16260	0.38	+1.0
3,111	+		EX31_RS16260	0.38	+0.7
3,111	+		EX31_RS16260	0.38	+1.2
3,111	+		EX31_RS16260	0.38	+1.2
3,111	+		EX31_RS16260	0.38	+1.6
3,111	+		EX31_RS16260	0.38	+0.8
3,111	+		EX31_RS16260	0.38	+1.3
3,111	+		EX31_RS16260	0.38	+1.5
3,111	+		EX31_RS16260	0.38	+1.0
3,111	+		EX31_RS16260	0.38	+0.7
3,111	+		EX31_RS16260	0.38	+1.6
3,112	-		EX31_RS16260	0.38	-0.5
3,125	+		EX31_RS16260	0.42	+0.7
3,125	+		EX31_RS16260	0.42	+0.8
3,171	+		EX31_RS16260	0.53	+0.7
3,171	+		EX31_RS16260	0.53	+0.8
3,171	+		EX31_RS16260	0.53	+0.7
3,171	+		EX31_RS16260	0.53	+0.5
3,171	+		EX31_RS16260	0.53	+0.4
3,171	+		EX31_RS16260	0.53	+1.2
3,171	+		EX31_RS16260	0.53	+0.8
3,171	+		EX31_RS16260	0.53	+0.5
3,172	-		EX31_RS16260	0.53	-1.1
3,188	+		EX31_RS16260	0.57	+0.7
3,188	+		EX31_RS16260	0.57	+0.3
3,269	+		EX31_RS16260	0.77	+0.7
3,310	+		EX31_RS16260	0.88	+0.8
3,331	+				+0.6
3,331	+				+0.9
3,357	+				-0.4
3,357	+				+0.4
3,357	+				+0.2
3,357	+				+0.1
3,357	+				+0.3
3,357	+				+0.2
3,357	+				+1.4
3,357	+				+0.3
3,357	+				-0.6
3,357	+				-0.1
3,357	+				+0.7
3,358	-				-0.5
3,358	-				-0.4
3,358	-				-2.0
3,358	-				-0.0
3,358	-				-0.7
3,358	-				-0.2
3,358	-				+0.6
3,358	-				-0.1
3,358	-				+0.0
3,358	-				-1.3
3,358	-				-1.4
3,358	-				-0.9
3,358	-				-1.9
3,469	+				-1.2
3,469	+				-0.7
3,469	+				-1.2
3,470	-				+0.7
3,470	-				+0.6
3,470	-				+0.4
3,470	-				+0.5
3,525	+				-1.1
3,525	+				+0.0
3,525	+				-0.5
3,526	-				-1.1
3,882	+				-0.7
3,882	+				-0.3
3,882	+				+0.2
3,883	-				+0.3
3,958	+				-0.6
4,002	+				+0.1
4,002	+				+0.2
4,002	+				-0.4
4,002	+				-0.6
4,114	-		EX31_RS16265	0.25	-0.7
4,114	-		EX31_RS16265	0.25	-0.5
4,119	+		EX31_RS16265	0.26	-0.4
4,219	+		EX31_RS16265	0.53	-0.5
4,220	-		EX31_RS16265	0.54	-1.1
4,220	-		EX31_RS16265	0.54	+0.1
4,220	-		EX31_RS16265	0.54	+0.1
4,225	+		EX31_RS16265	0.55	-2.6
4,225	+		EX31_RS16265	0.55	+0.5
4,225	+		EX31_RS16265	0.55	-0.5
4,226	-		EX31_RS16265	0.55	+0.1
4,226	-		EX31_RS16265	0.55	-0.3
4,226	-		EX31_RS16265	0.55	+0.5
4,226	-		EX31_RS16265	0.55	-0.5
4,226	-		EX31_RS16265	0.55	+0.3
4,226	-		EX31_RS16265	0.55	+0.6
4,226	-		EX31_RS16265	0.55	+0.3
4,226	-		EX31_RS16265	0.55	+0.4
4,292	+		EX31_RS16265	0.73	+1.0
4,292	+		EX31_RS16265	0.73	-1.5
4,293	-		EX31_RS16265	0.73	-0.3
4,293	-		EX31_RS16265	0.73	+0.3
4,293	-		EX31_RS16265	0.73	-1.0
4,293	-		EX31_RS16265	0.73	+0.0
4,293	-		EX31_RS16265	0.73	+0.3
4,340	+		EX31_RS16265	0.86	+0.4
4,340	+		EX31_RS16265	0.86	+0.2
4,341	-		EX31_RS16265	0.87	+0.2
4,357	+				-1.4