Strain Fitness in Rahnella sp. WP5 around EX31_RS15040

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
22,588	+		EX31_RS15035	0.36	-0.6
22,588	+		EX31_RS15035	0.36	-0.2
22,604	+		EX31_RS15035	0.37	-0.3
22,605	-		EX31_RS15035	0.37	-0.1
22,605	-		EX31_RS15035	0.37	-0.7
22,625	+		EX31_RS15035	0.38	+0.5
22,625	+		EX31_RS15035	0.38	-1.4
22,736	+		EX31_RS15035	0.46	-0.3
23,035	+		EX31_RS15035	0.66	+0.6
23,035	+		EX31_RS15035	0.66	-2.0
23,035	+		EX31_RS15035	0.66	-0.1
23,036	-		EX31_RS15035	0.66	+1.0
23,036	-		EX31_RS15035	0.66	+0.6
23,036	-		EX31_RS15035	0.66	-0.6
23,036	-		EX31_RS15035	0.66	+0.1
23,072	+		EX31_RS15035	0.68	-0.1
23,073	-		EX31_RS15035	0.68	-0.6
23,074	+		EX31_RS15035	0.68	+1.4
23,075	-		EX31_RS15035	0.68	+0.6
23,132	+		EX31_RS15035	0.72	+0.0
23,150	+		EX31_RS15035	0.73	+0.8
23,151	-		EX31_RS15035	0.73	+0.5
23,186	-		EX31_RS15035	0.76	+0.3
23,349	+		EX31_RS15035	0.87	+1.1
23,438	+				+0.9
23,438	+				+0.5
23,459	+				+0.8
23,524	+				-0.2
23,524	+				+0.2
23,524	+				+1.1
23,524	+				-0.0
23,524	+				+1.5
23,524	+				+0.4
23,525	-				+1.0
23,525	-				+0.0
23,525	-				+1.3
23,541	+				+0.2
23,541	+				-0.4
23,541	+				+0.8
23,541	+				-0.3
23,542	-				+0.4
23,542	-				+0.6
23,542	-				+1.3
23,546	+				-0.0
23,546	+				+0.0
23,546	+				-0.2
23,546	+				+0.9
23,546	+				+0.7
23,546	+				-0.2
23,546	+				-0.1
23,546	+				+0.2
23,546	+				+0.6
23,546	+				+0.2
23,546	+				+1.5
23,546	+				-0.8
23,546	+				+0.3
23,546	+				-1.1
23,546	+				-0.1
23,546	+				-0.9
23,546	+				-0.0
23,546	+				+1.0
23,546	+				+0.0
23,546	+				+0.7
23,546	+				+0.7
23,546	+				+0.4
23,546	+				+0.3
23,546	+				-0.1
23,546	+				+0.3
23,546	+				+0.4
23,546	+				+1.0
23,546	+				-0.8
23,546	+				+0.7
23,546	+				+0.5
23,546	+				+0.2
23,546	+				+0.1
23,546	+				+0.4
23,546	+				-0.5
23,546	+				-1.0
23,546	+				+0.5
23,546	+				+0.1
23,546	+				+1.4
23,547	-				+0.6
23,547	-				+1.9
23,547	-				+1.1
23,547	-				+0.9
23,547	-				+0.9
23,547	-				+0.6
23,547	-				+0.7
23,547	-				+1.0
23,547	-				+0.8
23,547	-				+0.7
23,547	-				+0.6
23,547	-				+0.6
23,547	-				+0.9
23,547	-				+1.5
23,547	-				+1.0
23,547	-				+0.8
23,547	-				+0.5
23,547	-				+0.9
23,547	-				+1.0
23,547	-				+0.8
23,547	-				+0.5
23,547	-				+0.4
23,547	-				+1.6
23,547	-				-0.1
23,547	-				+0.4
23,547	-				+0.6
23,547	-				+0.2
23,547	-				-0.1
23,547	-				+1.6
23,547	-				+0.2
23,547	-				+1.5
23,547	-				+0.0
23,547	-				+0.2
23,547	-				-0.6
23,547	-				+1.4
23,547	-				+0.6
23,547	-				-1.3
23,547	-				-0.1
23,547	-				+0.5
23,547	-				+1.7
23,547	-				+1.3
23,567	+				+0.4
23,567	+				-0.2
23,568	-				+0.8
23,576	+				+0.1
23,576	+				-0.5
23,576	+				-0.3
23,576	+				+0.3
23,576	+				-0.0
23,576	+				-0.1
23,577	-				+0.5
23,577	-				+0.4
23,577	-				+1.3
23,577	-				+1.4
23,577	-				+0.3
23,577	-				+1.3
23,577	-				+0.4
23,577	-				+0.0
23,577	-				+1.3
23,577	-				+0.4
23,609	+				+0.8
23,609	+				-0.2
23,610	-				-0.4
23,610	-				+1.3
23,610	-				-0.3
23,676	+				-0.2
23,676	+				-0.3
23,677	-				+0.6
23,695	+		EX31_RS15040	0.11	+0.8
23,695	+		EX31_RS15040	0.11	+0.6
23,695	+		EX31_RS15040	0.11	+0.4
23,695	+		EX31_RS15040	0.11	+0.1
23,695	+		EX31_RS15040	0.11	+0.6
23,696	-		EX31_RS15040	0.11	+0.4
23,700	-		EX31_RS15040	0.11	+0.3
23,700	-		EX31_RS15040	0.11	+0.1
23,700	-		EX31_RS15040	0.11	+0.2
23,700	-		EX31_RS15040	0.11	+0.6
23,725	+		EX31_RS15040	0.13	-0.6
23,725	+		EX31_RS15040	0.13	-0.5
23,725	+		EX31_RS15040	0.13	+0.2
23,726	-		EX31_RS15040	0.13	+0.1
23,726	-		EX31_RS15040	0.13	+0.9
23,726	-		EX31_RS15040	0.13	+0.1
23,726	-		EX31_RS15040	0.13	+0.7
23,726	-		EX31_RS15040	0.13	+0.1
23,734	-		EX31_RS15040	0.14	+0.8
23,756	-		EX31_RS15040	0.16	-0.3
23,827	+		EX31_RS15040	0.21	+0.2
23,827	+		EX31_RS15040	0.21	+0.3
23,827	+		EX31_RS15040	0.21	-1.8
23,854	+		EX31_RS15040	0.23	-0.4
23,854	+		EX31_RS15040	0.23	+0.4
23,854	+		EX31_RS15040	0.23	-0.2
23,855	-		EX31_RS15040	0.23	+1.0
23,855	-		EX31_RS15040	0.23	+0.4
23,855	-		EX31_RS15040	0.23	+1.5
23,855	-		EX31_RS15040	0.23	-0.8
23,855	-		EX31_RS15040	0.23	+0.3
23,855	-		EX31_RS15040	0.23	-0.1
23,855	-		EX31_RS15040	0.23	-0.2
23,859	-		EX31_RS15040	0.24	+0.3
23,859	-		EX31_RS15040	0.24	+1.1
23,859	-		EX31_RS15040	0.24	+0.7
23,859	-		EX31_RS15040	0.24	+0.3
24,105	+		EX31_RS15040	0.43	-1.3
24,105	+		EX31_RS15040	0.43	+0.1
24,106	-		EX31_RS15040	0.43	+0.6
24,137	-		EX31_RS15040	0.45	+0.8
24,137	-		EX31_RS15040	0.45	+1.2
24,203	+		EX31_RS15040	0.50	+0.3
24,204	-		EX31_RS15040	0.50	+0.8
24,204	-		EX31_RS15040	0.50	+1.7
24,278	+		EX31_RS15040	0.56	-0.4
24,279	-		EX31_RS15040	0.56	+0.9
24,279	-		EX31_RS15040	0.56	+1.5
24,312	-		EX31_RS15040	0.59	+0.4
24,338	+		EX31_RS15040	0.61	-1.0
24,338	+		EX31_RS15040	0.61	+0.4
24,338	+		EX31_RS15040	0.61	-0.5
24,339	-		EX31_RS15040	0.61	+0.5
24,339	-		EX31_RS15040	0.61	+0.5
24,339	-		EX31_RS15040	0.61	+0.8
24,339	-		EX31_RS15040	0.61	-0.0
24,339	-		EX31_RS15040	0.61	+0.3
24,339	-		EX31_RS15040	0.61	+0.7
24,339	-		EX31_RS15040	0.61	+0.8
24,339	-		EX31_RS15040	0.61	+0.1
24,339	-		EX31_RS15040	0.61	+0.4
24,339	-		EX31_RS15040	0.61	+0.4
24,339	-		EX31_RS15040	0.61	+0.7
24,339	-		EX31_RS15040	0.61	+0.7
24,358	-		EX31_RS15040	0.62	+0.8
24,358	-		EX31_RS15040	0.62	+0.5
24,398	+		EX31_RS15040	0.65	-0.4
24,399	-		EX31_RS15040	0.65	+0.5
24,399	-		EX31_RS15040	0.65	+0.5
24,403	+		EX31_RS15040	0.66	+0.0
24,404	-		EX31_RS15040	0.66	+1.1
24,404	-		EX31_RS15040	0.66	-0.4
24,404	-		EX31_RS15040	0.66	+1.1
24,461	+		EX31_RS15040	0.70	+0.1
24,461	+		EX31_RS15040	0.70	+1.5
24,461	+		EX31_RS15040	0.70	-0.5
24,462	-		EX31_RS15040	0.70	+1.2
24,462	-		EX31_RS15040	0.70	+1.2
24,476	-		EX31_RS15040	0.71	+0.7
24,501	+		EX31_RS15040	0.73	-0.6
24,502	-		EX31_RS15040	0.73	-0.1
24,515	+		EX31_RS15040	0.74	+0.3
24,525	+		EX31_RS15040	0.75	+1.0
24,525	+		EX31_RS15040	0.75	-0.5
24,525	+		EX31_RS15040	0.75	+1.0
24,526	-		EX31_RS15040	0.75	+1.2
24,526	-		EX31_RS15040	0.75	+0.5
24,526	-		EX31_RS15040	0.75	+0.8
24,569	+		EX31_RS15040	0.79	+0.0
24,570	-		EX31_RS15040	0.79	+0.9
24,570	-		EX31_RS15040	0.79	+1.5
24,570	-		EX31_RS15040	0.79	+1.1
24,570	-		EX31_RS15040	0.79	+0.6
24,638	-		EX31_RS15040	0.84	+0.2
24,638	-		EX31_RS15040	0.84	+0.5
24,647	+		EX31_RS15040	0.85	+0.2
24,648	-		EX31_RS15040	0.85	+0.3
24,648	-		EX31_RS15040	0.85	-0.6
24,648	-		EX31_RS15040	0.85	+0.7
24,655	-		EX31_RS15040	0.85	+1.1
24,749	+				+0.8
24,749	+				+0.6
24,750	-				+1.1
24,750	-				-0.1
24,750	-				+1.6
24,750	-				+1.3
24,755	-				+1.2
24,784	-				+1.6
24,784	-				+1.5
24,845	+				+0.6
24,845	+				+0.1
24,845	+				-0.1
24,845	+				-1.0
24,845	+				+0.7
24,846	-				+1.3
24,846	-				+0.5
24,854	-				-0.3
24,858	+				-0.9
24,858	+				+1.5
24,859	-				+0.3
24,859	-				+0.2
24,865	+				+0.6
24,865	+				+0.8
24,869	+				+1.3
24,869	+				+0.9
24,869	+				+1.7
24,869	+				+1.3
24,869	+				+1.1
24,869	+				+2.1
24,869	+				+0.8
24,869	+				+0.8
24,869	+				+1.6
24,869	+				+2.2
24,870	-				-0.1
24,870	-				+0.3
24,877	+				+0.7
24,877	+				+0.8
24,899	+				+0.6
24,921	-				+0.5
24,926	+				+0.9
24,926	+				+1.2
24,926	+				+0.6
24,926	+				+0.9
24,926	+				+0.8
24,926	+				+1.2
24,926	+				+0.7
24,926	+				+1.2
24,927	-				-0.5
24,927	-				+0.1
24,927	-				+0.2
24,927	-				-0.5
24,927	-				+0.5
24,939	+				+1.0
24,945	+				+1.2
24,945	+				+1.2
24,946	-				-0.6
24,972	-				-0.6
24,977	+				+1.0
24,977	+				-0.3
25,012	+		EX31_RS15045	0.15	+1.1
25,012	+		EX31_RS15045	0.15	+0.4
25,070	+		EX31_RS15045	0.33	+0.1
25,070	+		EX31_RS15045	0.33	+0.5
25,070	+		EX31_RS15045	0.33	+1.0
25,070	+		EX31_RS15045	0.33	+1.1
25,070	+		EX31_RS15045	0.33	+0.2
25,070	+		EX31_RS15045	0.33	+1.0
25,070	+		EX31_RS15045	0.33	-1.3
25,070	+		EX31_RS15045	0.33	+1.0
25,070	+		EX31_RS15045	0.33	+1.1
25,070	+		EX31_RS15045	0.33	+0.6
25,070	+		EX31_RS15045	0.33	+1.5
25,070	+		EX31_RS15045	0.33	+1.6
25,070	+		EX31_RS15045	0.33	+0.5
25,071	-		EX31_RS15045	0.33	+0.6
25,071	-		EX31_RS15045	0.33	-0.4
25,071	-		EX31_RS15045	0.33	+1.1
25,071	-		EX31_RS15045	0.33	-0.3
25,071	-		EX31_RS15045	0.33	-0.8
25,071	-		EX31_RS15045	0.33	+0.2
25,071	-		EX31_RS15045	0.33	+0.3
25,071	-		EX31_RS15045	0.33	-0.2
25,071	-		EX31_RS15045	0.33	-2.2
25,071	-		EX31_RS15045	0.33	+0.9
25,160	+		EX31_RS15045	0.60	+1.5
25,160	+		EX31_RS15045	0.60	+0.9
25,160	+		EX31_RS15045	0.60	+0.9
25,160	+		EX31_RS15045	0.60	+1.2
25,160	+		EX31_RS15045	0.60	+0.1
25,161	-		EX31_RS15045	0.61	-1.6
25,169	+		EX31_RS15045	0.63	+1.5
25,169	+		EX31_RS15045	0.63	+1.9
25,169	+		EX31_RS15045	0.63	+1.1
25,170	-		EX31_RS15045	0.63	+0.5
25,170	-		EX31_RS15045	0.63	+0.8
25,170	-		EX31_RS15045	0.63	-0.1
25,170	-		EX31_RS15045	0.63	-0.5
25,173	+		EX31_RS15045	0.64	+2.0
25,173	+		EX31_RS15045	0.64	+1.4
25,174	-		EX31_RS15045	0.65	+0.9
25,187	+		EX31_RS15045	0.69	-0.0
25,194	-		EX31_RS15045	0.71	+0.1
25,194	-		EX31_RS15045	0.71	-0.4
25,204	+		EX31_RS15045	0.74	+0.1
25,204	+		EX31_RS15045	0.74	+1.2
25,208	+		EX31_RS15045	0.75	+0.8
25,233	-		EX31_RS15045	0.83	-0.2
25,233	-		EX31_RS15045	0.83	+0.5
25,273	+				+0.7
25,273	+				+0.9
25,274	-				+0.3
25,280	+				+0.9
25,280	+				+1.0
25,280	+				+1.1
25,280	+				+1.4
25,280	+				+1.7
25,281	-				+0.1
25,373	+				+0.1
25,373	+				+0.5
25,373	+				+0.2
25,385	+				+2.6
25,385	+				+2.4
25,394	+				+1.8
25,394	+				+3.1
25,401	+				+2.4
25,401	+				+1.4
25,401	+				+3.1
25,401	+				+2.2
25,401	+				+2.3
25,401	+				+2.7
25,407	+				+0.9
25,407	+				+1.4
25,407	+				+1.2
25,407	+				+2.5
25,407	+				+1.7
25,407	+				+1.5
25,419	+				+1.7
25,426	+				+1.4
25,453	+				+1.9
25,473	+				+1.0
25,473	+				+0.7
25,531	+				+0.4
25,554	+				+0.5
25,554	+				+1.2
25,554	+				+0.5
25,554	+				+0.4
25,582	+				+0.4
25,608	+				+0.2
25,612	+				+0.2
25,612	+				+1.6
25,612	+				-0.6
25,612	+				+0.6
25,612	+				-0.2
25,612	+				+0.2
25,621	+				+0.2
25,621	+				+0.9
25,621	+				-0.4
25,621	+				-0.1
25,621	+				+0.5
25,621	+				+0.3
25,621	+				+0.5
25,621	+				+0.5
25,621	+				+0.3
25,621	+				-1.0
25,621	+				+0.0
25,621	+				+1.9
25,621	+				+0.0
25,626	+				+0.3
25,626	+				+0.7
25,626	+				+1.4
25,679	+				+0.3
25,679	+				+0.9
25,679	+				+1.3