Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14285 and EX31_RS14290 are separated by 16 nucleotides EX31_RS14290 and EX31_RS14295 are separated by 158 nucleotides EX31_RS14295 and EX31_RS14300 are separated by 127 nucleotides EX31_RS14300 and EX31_RS14305 are separated by 67 nucleotides
EX31_RS14285: EX31_RS14285 - ferredoxin--NADP(+) reductase, at 39,802 to 40,548
_RS14285
EX31_RS14290: EX31_RS14290 - DUF805 domain-containing protein, at 40,565 to 40,987
_RS14290
EX31_RS14295: EX31_RS14295 - DUF1454 family protein, at 41,146 to 41,754
_RS14295
EX31_RS14300: EX31_RS14300 - triose-phosphate isomerase, at 41,882 to 42,649
_RS14300
EX31_RS14305: EX31_RS14305 - sulfate ABC transporter substrate-binding protein, at 42,717 to 43,706
_RS14305
Position (kb) 41
42 Strain fitness (log2 ratio) -1
0
1
2 at 40.162 kb on + strand, within EX31_RS14285 at 40.163 kb on - strand, within EX31_RS14285 at 40.163 kb on - strand, within EX31_RS14285 at 40.163 kb on - strand, within EX31_RS14285 at 40.163 kb on - strand, within EX31_RS14285 at 40.209 kb on + strand, within EX31_RS14285 at 40.210 kb on - strand, within EX31_RS14285 at 40.210 kb on - strand, within EX31_RS14285 at 40.210 kb on - strand, within EX31_RS14285 at 40.252 kb on + strand, within EX31_RS14285 at 40.252 kb on + strand, within EX31_RS14285 at 40.252 kb on + strand, within EX31_RS14285 at 40.252 kb on + strand, within EX31_RS14285 at 40.253 kb on - strand, within EX31_RS14285 at 40.253 kb on - strand, within EX31_RS14285 at 40.253 kb on - strand, within EX31_RS14285 at 40.253 kb on - strand, within EX31_RS14285 at 40.253 kb on - strand, within EX31_RS14285 at 40.262 kb on + strand, within EX31_RS14285 at 40.401 kb on + strand, within EX31_RS14285 at 40.402 kb on - strand, within EX31_RS14285 at 40.402 kb on - strand, within EX31_RS14285 at 40.472 kb on + strand, within EX31_RS14285 at 40.472 kb on + strand, within EX31_RS14285 at 40.472 kb on + strand, within EX31_RS14285 at 40.472 kb on + strand, within EX31_RS14285 at 40.473 kb on - strand, within EX31_RS14285 at 40.473 kb on - strand, within EX31_RS14285 at 40.473 kb on - strand, within EX31_RS14285 at 40.491 kb on + strand at 40.525 kb on - strand at 40.540 kb on + strand at 40.541 kb on - strand at 40.541 kb on - strand at 40.541 kb on - strand at 40.547 kb on - strand at 40.566 kb on + strand at 40.651 kb on + strand, within EX31_RS14290 at 40.652 kb on - strand, within EX31_RS14290 at 40.652 kb on - strand, within EX31_RS14290 at 40.826 kb on + strand, within EX31_RS14290 at 40.826 kb on + strand, within EX31_RS14290 at 40.827 kb on - strand, within EX31_RS14290 at 40.827 kb on - strand, within EX31_RS14290 at 40.857 kb on + strand, within EX31_RS14290 at 40.857 kb on + strand, within EX31_RS14290 at 40.857 kb on + strand, within EX31_RS14290 at 40.857 kb on + strand, within EX31_RS14290 at 40.858 kb on - strand, within EX31_RS14290 at 40.858 kb on - strand, within EX31_RS14290 at 40.858 kb on - strand, within EX31_RS14290 at 40.858 kb on - strand, within EX31_RS14290 at 40.862 kb on - strand, within EX31_RS14290 at 40.862 kb on - strand, within EX31_RS14290 at 40.862 kb on - strand, within EX31_RS14290 at 40.862 kb on - strand, within EX31_RS14290 at 40.862 kb on - strand, within EX31_RS14290 at 40.980 kb on - strand at 40.980 kb on - strand at 41.008 kb on + strand at 41.008 kb on + strand at 41.008 kb on + strand at 41.009 kb on - strand at 41.009 kb on - strand at 41.009 kb on - strand at 41.020 kb on - strand at 41.020 kb on - strand at 41.024 kb on + strand at 41.044 kb on - strand at 41.044 kb on - strand at 41.044 kb on - strand at 41.044 kb on - strand at 41.044 kb on - strand at 41.093 kb on - strand at 41.111 kb on + strand at 41.133 kb on + strand at 41.133 kb on + strand at 41.134 kb on - strand at 41.134 kb on - strand at 41.146 kb on - strand at 41.166 kb on - strand at 41.166 kb on - strand at 41.168 kb on + strand at 41.168 kb on + strand at 41.168 kb on + strand at 41.168 kb on + strand at 41.168 kb on + strand at 41.168 kb on + strand at 41.193 kb on + strand at 41.193 kb on + strand at 41.193 kb on + strand at 41.194 kb on - strand at 41.194 kb on - strand at 41.211 kb on + strand, within EX31_RS14295 at 41.212 kb on - strand, within EX31_RS14295 at 41.212 kb on - strand, within EX31_RS14295 at 41.212 kb on - strand, within EX31_RS14295 at 41.329 kb on + strand, within EX31_RS14295 at 41.330 kb on - strand, within EX31_RS14295 at 41.330 kb on - strand, within EX31_RS14295 at 41.330 kb on - strand, within EX31_RS14295 at 41.330 kb on - strand, within EX31_RS14295 at 41.330 kb on - strand, within EX31_RS14295 at 41.330 kb on - strand, within EX31_RS14295 at 41.330 kb on - strand, within EX31_RS14295 at 41.382 kb on + strand, within EX31_RS14295 at 41.383 kb on - strand, within EX31_RS14295 at 41.424 kb on + strand, within EX31_RS14295 at 41.425 kb on - strand, within EX31_RS14295 at 41.437 kb on + strand, within EX31_RS14295 at 41.494 kb on + strand, within EX31_RS14295 at 41.494 kb on + strand, within EX31_RS14295 at 41.494 kb on + strand, within EX31_RS14295 at 41.494 kb on + strand, within EX31_RS14295 at 41.494 kb on + strand, within EX31_RS14295 at 41.494 kb on + strand, within EX31_RS14295 at 41.494 kb on + strand, within EX31_RS14295 at 41.495 kb on - strand, within EX31_RS14295 at 41.495 kb on - strand, within EX31_RS14295 at 41.495 kb on - strand, within EX31_RS14295 at 41.495 kb on - strand, within EX31_RS14295 at 41.495 kb on - strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.548 kb on + strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.549 kb on - strand, within EX31_RS14295 at 41.551 kb on - strand, within EX31_RS14295 at 41.551 kb on - strand, within EX31_RS14295 at 41.551 kb on - strand, within EX31_RS14295 at 41.551 kb on - strand, within EX31_RS14295 at 41.551 kb on - strand, within EX31_RS14295 at 41.551 kb on - strand, within EX31_RS14295 at 41.585 kb on + strand, within EX31_RS14295 at 41.586 kb on - strand, within EX31_RS14295 at 41.650 kb on + strand, within EX31_RS14295 at 41.650 kb on + strand, within EX31_RS14295 at 41.651 kb on - strand, within EX31_RS14295 at 41.651 kb on - strand, within EX31_RS14295 at 41.652 kb on + strand, within EX31_RS14295 at 41.652 kb on + strand, within EX31_RS14295 at 41.663 kb on + strand, within EX31_RS14295 at 41.664 kb on - strand, within EX31_RS14295 at 41.767 kb on + strand at 41.789 kb on + strand at 41.805 kb on + strand at 41.806 kb on - strand at 41.806 kb on - strand at 41.807 kb on + strand at 41.807 kb on + strand at 41.807 kb on + strand at 41.807 kb on + strand at 41.807 kb on + strand at 41.807 kb on + strand at 41.808 kb on - strand at 41.821 kb on + strand at 41.821 kb on + strand at 41.821 kb on + strand at 41.821 kb on + strand at 41.822 kb on - strand at 41.830 kb on + strand at 41.830 kb on + strand at 41.830 kb on + strand at 41.830 kb on + strand at 42.638 kb on - strand at 42.638 kb on - strand at 42.647 kb on + strand at 42.647 kb on + strand at 42.707 kb on - strand at 42.707 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 40,162 + EX31_RS14285 0.48 -0.4 40,163 - EX31_RS14285 0.48 -0.1 40,163 - EX31_RS14285 0.48 -0.5 40,163 - EX31_RS14285 0.48 -0.0 40,163 - EX31_RS14285 0.48 -0.5 40,209 + EX31_RS14285 0.54 +0.1 40,210 - EX31_RS14285 0.55 -0.5 40,210 - EX31_RS14285 0.55 -1.4 40,210 - EX31_RS14285 0.55 +0.2 40,252 + EX31_RS14285 0.60 +0.5 40,252 + EX31_RS14285 0.60 +0.7 40,252 + EX31_RS14285 0.60 -0.5 40,252 + EX31_RS14285 0.60 +0.2 40,253 - EX31_RS14285 0.60 -0.5 40,253 - EX31_RS14285 0.60 -1.0 40,253 - EX31_RS14285 0.60 -0.8 40,253 - EX31_RS14285 0.60 +0.4 40,253 - EX31_RS14285 0.60 +0.1 40,262 + EX31_RS14285 0.62 -0.1 40,401 + EX31_RS14285 0.80 +0.7 40,402 - EX31_RS14285 0.80 -0.1 40,402 - EX31_RS14285 0.80 +0.4 40,472 + EX31_RS14285 0.90 +0.2 40,472 + EX31_RS14285 0.90 +0.1 40,472 + EX31_RS14285 0.90 -0.9 40,472 + EX31_RS14285 0.90 +0.9 40,473 - EX31_RS14285 0.90 -0.2 40,473 - EX31_RS14285 0.90 -0.2 40,473 - EX31_RS14285 0.90 -0.2 40,491 + -0.3 40,525 - -0.1 40,540 + -0.2 40,541 - +0.1 40,541 - +0.2 40,541 - -0.1 40,547 - -0.1 40,566 + -0.2 40,651 + EX31_RS14290 0.20 -1.0 40,652 - EX31_RS14290 0.21 +0.3 40,652 - EX31_RS14290 0.21 +0.3 40,826 + EX31_RS14290 0.62 -1.1 40,826 + EX31_RS14290 0.62 -0.9 40,827 - EX31_RS14290 0.62 +0.3 40,827 - EX31_RS14290 0.62 +0.5 40,857 + EX31_RS14290 0.69 -0.1 40,857 + EX31_RS14290 0.69 -0.3 40,857 + EX31_RS14290 0.69 +0.3 40,857 + EX31_RS14290 0.69 -0.2 40,858 - EX31_RS14290 0.69 -1.2 40,858 - EX31_RS14290 0.69 +0.2 40,858 - EX31_RS14290 0.69 -0.4 40,858 - EX31_RS14290 0.69 +0.2 40,862 - EX31_RS14290 0.70 +0.6 40,862 - EX31_RS14290 0.70 -0.9 40,862 - EX31_RS14290 0.70 +0.7 40,862 - EX31_RS14290 0.70 +0.5 40,862 - EX31_RS14290 0.70 +0.2 40,980 - +0.3 40,980 - +0.3 41,008 + -0.2 41,008 + -1.0 41,008 + -0.6 41,009 - +0.0 41,009 - -0.3 41,009 - -0.4 41,020 - -0.6 41,020 - +0.1 41,024 + -0.7 41,044 - +0.5 41,044 - -1.0 41,044 - -0.8 41,044 - +0.1 41,044 - +0.1 41,093 - -0.0 41,111 + -0.5 41,133 + -0.3 41,133 + -0.3 41,134 - -0.6 41,134 - +0.2 41,146 - +0.0 41,166 - +0.8 41,166 - +0.6 41,168 + +0.1 41,168 + +1.2 41,168 + +0.3 41,168 + -0.3 41,168 + +0.0 41,168 + -0.5 41,193 + -0.5 41,193 + -0.4 41,193 + +0.3 41,194 - +0.5 41,194 - +1.1 41,211 + EX31_RS14295 0.11 +0.5 41,212 - EX31_RS14295 0.11 +0.6 41,212 - EX31_RS14295 0.11 -0.3 41,212 - EX31_RS14295 0.11 +0.3 41,329 + EX31_RS14295 0.30 +0.1 41,330 - EX31_RS14295 0.30 +0.2 41,330 - EX31_RS14295 0.30 -0.6 41,330 - EX31_RS14295 0.30 -0.3 41,330 - EX31_RS14295 0.30 +0.2 41,330 - EX31_RS14295 0.30 +0.2 41,330 - EX31_RS14295 0.30 +0.4 41,330 - EX31_RS14295 0.30 +0.2 41,382 + EX31_RS14295 0.39 -0.1 41,383 - EX31_RS14295 0.39 +0.3 41,424 + EX31_RS14295 0.46 +1.4 41,425 - EX31_RS14295 0.46 +0.5 41,437 + EX31_RS14295 0.48 +0.2 41,494 + EX31_RS14295 0.57 +1.0 41,494 + EX31_RS14295 0.57 +0.4 41,494 + EX31_RS14295 0.57 -0.5 41,494 + EX31_RS14295 0.57 -0.0 41,494 + EX31_RS14295 0.57 +1.1 41,494 + EX31_RS14295 0.57 +1.0 41,494 + EX31_RS14295 0.57 +0.2 41,495 - EX31_RS14295 0.57 +0.6 41,495 - EX31_RS14295 0.57 +0.7 41,495 - EX31_RS14295 0.57 +0.8 41,495 - EX31_RS14295 0.57 -1.2 41,495 - EX31_RS14295 0.57 -0.2 41,548 + EX31_RS14295 0.66 +0.5 41,548 + EX31_RS14295 0.66 +0.4 41,548 + EX31_RS14295 0.66 +0.7 41,548 + EX31_RS14295 0.66 +0.1 41,548 + EX31_RS14295 0.66 +0.5 41,548 + EX31_RS14295 0.66 +1.0 41,548 + EX31_RS14295 0.66 +0.5 41,548 + EX31_RS14295 0.66 +0.4 41,548 + EX31_RS14295 0.66 +0.1 41,548 + EX31_RS14295 0.66 +0.5 41,548 + EX31_RS14295 0.66 +0.8 41,548 + EX31_RS14295 0.66 +0.2 41,548 + EX31_RS14295 0.66 +0.7 41,548 + EX31_RS14295 0.66 -0.8 41,548 + EX31_RS14295 0.66 +0.2 41,548 + EX31_RS14295 0.66 +0.2 41,548 + EX31_RS14295 0.66 +0.1 41,548 + EX31_RS14295 0.66 +0.1 41,548 + EX31_RS14295 0.66 +0.6 41,549 - EX31_RS14295 0.66 +1.1 41,549 - EX31_RS14295 0.66 +0.5 41,549 - EX31_RS14295 0.66 +0.0 41,549 - EX31_RS14295 0.66 +0.7 41,549 - EX31_RS14295 0.66 -1.2 41,549 - EX31_RS14295 0.66 -0.1 41,549 - EX31_RS14295 0.66 -0.6 41,549 - EX31_RS14295 0.66 -0.3 41,549 - EX31_RS14295 0.66 +0.1 41,549 - EX31_RS14295 0.66 +0.3 41,549 - EX31_RS14295 0.66 +0.9 41,549 - EX31_RS14295 0.66 +1.2 41,549 - EX31_RS14295 0.66 +0.7 41,549 - EX31_RS14295 0.66 +0.2 41,549 - EX31_RS14295 0.66 +0.3 41,549 - EX31_RS14295 0.66 +0.1 41,549 - EX31_RS14295 0.66 -0.2 41,549 - EX31_RS14295 0.66 +0.7 41,549 - EX31_RS14295 0.66 +0.2 41,549 - EX31_RS14295 0.66 +0.5 41,549 - EX31_RS14295 0.66 +0.9 41,549 - EX31_RS14295 0.66 +0.2 41,549 - EX31_RS14295 0.66 -1.2 41,549 - EX31_RS14295 0.66 +0.4 41,549 - EX31_RS14295 0.66 +0.0 41,551 - EX31_RS14295 0.67 +0.8 41,551 - EX31_RS14295 0.67 +0.2 41,551 - EX31_RS14295 0.67 +0.2 41,551 - EX31_RS14295 0.67 +0.0 41,551 - EX31_RS14295 0.67 +1.0 41,551 - EX31_RS14295 0.67 -0.4 41,585 + EX31_RS14295 0.72 +0.2 41,586 - EX31_RS14295 0.72 +0.3 41,650 + EX31_RS14295 0.83 +0.8 41,650 + EX31_RS14295 0.83 +0.4 41,651 - EX31_RS14295 0.83 -0.3 41,651 - EX31_RS14295 0.83 -0.1 41,652 + EX31_RS14295 0.83 +0.8 41,652 + EX31_RS14295 0.83 +0.6 41,663 + EX31_RS14295 0.85 +0.2 41,664 - EX31_RS14295 0.85 -0.2 41,767 + +0.7 41,789 + -0.2 41,805 + +0.5 41,806 - +0.8 41,806 - -0.4 41,807 + +0.3 41,807 + -0.6 41,807 + +0.6 41,807 + -0.5 41,807 + +0.1 41,807 + +0.0 41,808 - -1.0 41,821 + +0.5 41,821 + -0.4 41,821 + +0.3 41,821 + +0.8 41,822 - -0.4 41,830 + +0.5 41,830 + +0.7 41,830 + +0.4 41,830 + +0.4 42,638 - -0.3 42,638 - -1.6 42,647 + +0.2 42,647 + +1.8 42,707 - +0.1 42,707 - +0.3
Or see this region's nucleotide sequence